Wall clock time and date at job start Tue Mar 31 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47012 * 2 1 4 4 C 1.52997 * 109.47096 * 239.99954 * 2 1 3 5 5 C 1.52995 * 109.47012 * 185.26331 * 4 2 1 6 6 H 1.09000 * 109.47566 * 305.97651 * 5 4 2 7 7 C 1.53005 * 109.47252 * 65.97801 * 5 4 2 8 8 N 1.46495 * 109.47133 * 174.99723 * 7 5 4 9 9 C 1.36936 * 119.99996 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99617 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00296 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00209 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46791 * 60.00639 * 13 11 9 15 15 H 1.48499 * 109.46957 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46845 * 300.00352 * 13 11 9 17 17 N 1.46508 * 109.47159 * 185.97399 * 5 4 2 18 18 C 1.34772 * 119.99597 * 81.60803 * 17 5 4 19 19 O 1.21618 * 120.00340 * 4.92541 * 18 17 5 20 20 C 1.43199 * 119.99751 * 184.92478 * 18 17 5 21 21 C 6.92599 * 119.50829 * 254.32901 * 2 1 3 22 22 C 8.35167 * 117.14487 * 252.71127 * 2 1 3 23 23 C 1.53005 * 117.49969 * 331.88231 * 22 21 20 24 24 C 1.52999 * 117.50234 * 263.25767 * 22 21 20 25 25 H 1.09001 * 109.47581 * 60.00019 * 1 2 3 26 26 H 1.09009 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 299.99490 * 1 2 3 28 28 H 1.09005 * 109.46902 * 120.00208 * 2 1 3 29 29 H 1.08995 * 109.47115 * 294.58247 * 3 2 1 30 30 H 1.09002 * 109.47037 * 54.57908 * 3 2 1 31 31 H 1.08997 * 109.46723 * 174.57701 * 3 2 1 32 32 H 1.09005 * 109.47413 * 305.26719 * 4 2 1 33 33 H 1.09002 * 109.47235 * 65.26527 * 4 2 1 34 34 H 1.09001 * 109.46546 * 295.00155 * 7 5 4 35 35 H 1.09004 * 109.47023 * 54.99634 * 7 5 4 36 36 H 0.96999 * 120.00191 * 0.02562 * 8 7 5 37 37 H 0.97003 * 119.99873 * 179.97438 * 12 11 9 38 38 H 0.96995 * 119.99980 * 261.61089 * 17 5 4 39 39 H 1.09000 * 115.54643 * 117.58594 * 22 21 20 40 40 H 1.08999 * 117.49655 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.49598 * 145.02252 * 23 22 21 42 42 H 1.09000 * 117.50288 * 214.97928 * 24 22 21 43 43 H 1.09004 * 117.49412 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5642 -0.8368 -1.1848 6 1 3.9974 0.1513 -1.0297 7 6 3.9576 -1.7538 -0.0249 8 7 5.4079 -1.9603 -0.0358 9 6 5.9941 -2.7511 0.9161 10 1 5.3871 -3.2230 1.6746 11 6 7.3682 -2.9472 0.9054 12 7 8.1078 -2.3726 -0.0193 13 14 8.1678 -4.0267 2.2035 14 1 7.6089 -5.3998 2.1182 15 1 9.6342 -4.0734 1.9737 16 1 7.8960 -3.4643 3.5508 17 7 4.0650 -1.3978 -2.4422 18 6 4.2351 -0.6003 -3.5152 19 8 4.0590 0.5989 -3.4158 20 6 4.6232 -1.1651 -4.7726 21 6 4.9414 -1.6281 -5.8035 22 6 5.3404 -2.2086 -7.0960 23 6 4.8635 -3.6281 -7.4103 24 6 6.3335 -3.3723 -7.0715 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7580 1.9275 -0.9345 30 1 1.5995 1.9836 0.8375 31 1 3.1256 1.4440 0.0971 32 1 1.6017 -1.7181 -1.2977 33 1 1.7557 -0.1559 -2.1367 34 1 3.6632 -1.2933 0.9182 35 1 3.4531 -2.7140 -0.1335 36 1 5.9530 -1.5362 -0.7169 37 1 9.0681 -2.5093 -0.0266 38 1 4.2741 -2.3430 -2.5023 39 1 5.4096 -1.5053 -7.9259 40 1 4.2547 -4.1322 -6.6597 41 1 4.6189 -3.8588 -8.4471 42 1 7.0559 -3.4348 -7.8853 43 1 6.6911 -3.7082 -6.0981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268103538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:36 Heat of formation + Delta-G solvation = 32.550250 kcal Electronic energy + Delta-G solvation = -21267.461847 eV Core-core repulsion = 18121.662174 eV Total energy + Delta-G solvation = -3145.799673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.62454 -37.73887 -37.17419 -34.84507 -33.54854 -32.62056 -31.02406 -29.10085 -27.00584 -25.60351 -24.89594 -22.87066 -22.63362 -22.07415 -20.85442 -19.42230 -18.60660 -17.09046 -16.60429 -16.11587 -15.35465 -15.19120 -14.74652 -14.45896 -14.10955 -13.66949 -13.54234 -13.23452 -12.79671 -12.74573 -12.31470 -12.17193 -12.09946 -11.89924 -11.75309 -11.61800 -11.42037 -11.09290 -10.88524 -10.79309 -10.75911 -10.48577 -10.30758 -10.19902 -10.00746 -9.90638 -9.76035 -9.74599 -8.92395 -8.68887 -6.97472 -5.78748 -3.09096 1.66820 2.38531 3.31765 3.40112 3.42226 3.46729 3.47836 4.02335 4.18702 4.55937 4.56964 4.76156 4.88499 5.02230 5.05916 5.11632 5.33947 5.38226 5.47136 5.53601 5.56594 5.67276 5.75263 5.78527 5.81953 5.85579 5.88237 5.94788 6.02446 6.11484 6.18625 6.22604 6.35403 6.42938 6.51051 6.59124 6.70655 6.90498 7.32406 7.66319 7.78842 8.38592 8.42756 9.50412 10.06069 10.41309 11.43435 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.008102 B = 0.006001 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.279764 B = 4665.098862 C = 7525.811510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.120 4.120 5 C 0.136 3.864 6 H 0.093 0.907 7 C 0.145 3.855 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.698 5.698 18 C 0.633 3.367 19 O -0.531 6.531 20 C -0.204 4.204 21 C -0.067 4.067 22 C -0.063 4.063 23 C -0.161 4.161 24 C -0.159 4.159 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.024 0.976 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.408 0.592 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -0.213 -10.863 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.159 4.159 5 C 0.032 3.968 6 H 0.111 0.889 7 C 0.017 3.983 8 N -0.377 5.377 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.347 5.347 18 C 0.419 3.581 19 O -0.409 6.409 20 C -0.207 4.207 21 C -0.070 4.070 22 C -0.080 4.080 23 C -0.198 4.198 24 C -0.196 4.196 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.243 0.757 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.518 0.533 -10.607 15.667 hybrid contribution 0.870 -0.858 0.437 1.297 sum -10.648 -0.325 -10.171 14.729 Atomic orbital electron populations 1.21825 0.95532 1.01402 1.01396 1.21124 0.95285 0.96667 0.98441 1.21877 1.01717 0.95664 1.01311 1.21993 0.94918 1.00654 0.98383 1.21429 0.93235 0.99451 0.82723 0.88914 1.21017 0.87409 0.95537 0.94341 1.42369 1.00625 1.59081 1.35643 1.19162 0.90554 1.21656 1.06129 0.91163 1.24753 0.96275 1.00831 0.98869 1.69664 1.05182 1.47637 1.35415 0.86266 0.78372 0.80253 0.81254 1.21269 1.21697 1.21219 1.45854 1.65387 1.12818 1.10681 1.14658 0.77154 0.85529 0.80767 1.90824 1.51581 1.13984 1.84557 1.20802 1.04411 1.00345 0.95156 1.21260 0.94464 0.97617 0.93648 1.18849 1.06452 0.91485 0.91248 1.23093 0.97828 0.95657 1.03217 1.23132 0.92724 0.99313 1.04426 0.93001 0.92880 0.92862 0.90372 0.92749 0.93106 0.92057 0.91765 0.91624 0.94402 0.95786 0.77992 0.93406 0.75683 0.85011 0.88072 0.87576 0.87464 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.10 -1.23 2.80 -90.62 -0.25 -1.49 16 3 C -0.15 -1.97 8.83 37.16 0.33 -1.64 16 4 C -0.12 -1.70 4.39 -26.74 -0.12 -1.82 16 5 C 0.14 2.33 2.08 -67.93 -0.14 2.18 16 6 H 0.09 1.78 5.91 -51.93 -0.31 1.48 16 7 C 0.14 2.81 5.46 -4.04 -0.02 2.79 16 8 N -0.73 -18.18 5.43 -59.91 -0.33 -18.50 16 9 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 13 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.70 -12.06 4.54 -56.24 -0.26 -12.31 16 18 C 0.63 11.73 7.52 -14.34 -0.11 11.62 16 19 O -0.53 -11.23 16.78 5.26 0.09 -11.15 16 20 C -0.20 -3.44 13.62 -38.84 -0.53 -3.97 16 21 C -0.07 -0.97 13.47 -37.12 -0.50 -1.47 16 22 C -0.06 -0.64 6.22 -93.41 -0.58 -1.22 16 23 C -0.16 -1.32 10.21 -26.73 -0.27 -1.59 16 24 C -0.16 -1.43 10.21 -26.73 -0.27 -1.70 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.04 6.48 -51.93 -0.34 0.70 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.91 6.71 -51.93 -0.35 0.56 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.04 0.73 6.73 -51.93 -0.35 0.38 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.33 7.33 -40.82 -0.30 10.03 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.41 6.81 8.54 -40.82 -0.35 6.46 16 39 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -32.13 363.79 -8.71 -40.84 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.03 Total: 12.63 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.37 Total: -6.80 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.14 Total: -58.19 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.13 -8.71 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268103538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.390 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds