Wall clock time and date at job start Tue Mar 31 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47012 * 2 1 4 4 C 1.52997 * 109.47096 * 239.99954 * 2 1 3 5 5 C 1.52995 * 109.47012 * 185.26331 * 4 2 1 6 6 H 1.09000 * 109.47566 * 305.97651 * 5 4 2 7 7 C 1.53005 * 109.47252 * 65.97801 * 5 4 2 8 8 N 1.46495 * 109.47133 * 174.99723 * 7 5 4 9 9 C 1.36936 * 119.99996 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99617 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00296 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00209 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46791 * 60.00639 * 13 11 9 15 15 H 1.48499 * 109.46957 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46845 * 300.00352 * 13 11 9 17 17 N 1.46508 * 109.47159 * 185.97399 * 5 4 2 18 18 C 1.34772 * 119.99597 * 81.60803 * 17 5 4 19 19 O 1.21618 * 120.00340 * 4.92541 * 18 17 5 20 20 C 1.43199 * 119.99751 * 184.92478 * 18 17 5 21 21 C 6.92599 * 119.50829 * 254.32901 * 2 1 3 22 22 C 8.35167 * 117.14487 * 252.71127 * 2 1 3 23 23 C 1.53005 * 117.49969 * 331.88231 * 22 21 20 24 24 C 1.52999 * 117.50234 * 263.25767 * 22 21 20 25 25 H 1.09001 * 109.47581 * 60.00019 * 1 2 3 26 26 H 1.09009 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 299.99490 * 1 2 3 28 28 H 1.09005 * 109.46902 * 120.00208 * 2 1 3 29 29 H 1.08995 * 109.47115 * 294.58247 * 3 2 1 30 30 H 1.09002 * 109.47037 * 54.57908 * 3 2 1 31 31 H 1.08997 * 109.46723 * 174.57701 * 3 2 1 32 32 H 1.09005 * 109.47413 * 305.26719 * 4 2 1 33 33 H 1.09002 * 109.47235 * 65.26527 * 4 2 1 34 34 H 1.09001 * 109.46546 * 295.00155 * 7 5 4 35 35 H 1.09004 * 109.47023 * 54.99634 * 7 5 4 36 36 H 0.96999 * 120.00191 * 0.02562 * 8 7 5 37 37 H 0.97003 * 119.99873 * 179.97438 * 12 11 9 38 38 H 0.96995 * 119.99980 * 261.61089 * 17 5 4 39 39 H 1.09000 * 115.54643 * 117.58594 * 22 21 20 40 40 H 1.08999 * 117.49655 * 359.97438 * 23 22 21 41 41 H 1.08999 * 117.49598 * 145.02252 * 23 22 21 42 42 H 1.09000 * 117.50288 * 214.97928 * 24 22 21 43 43 H 1.09004 * 117.49412 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5642 -0.8368 -1.1848 6 1 3.9974 0.1513 -1.0297 7 6 3.9576 -1.7538 -0.0249 8 7 5.4079 -1.9603 -0.0358 9 6 5.9941 -2.7511 0.9161 10 1 5.3871 -3.2230 1.6746 11 6 7.3682 -2.9472 0.9054 12 7 8.1078 -2.3726 -0.0193 13 14 8.1678 -4.0267 2.2035 14 1 7.6089 -5.3998 2.1182 15 1 9.6342 -4.0734 1.9737 16 1 7.8960 -3.4643 3.5508 17 7 4.0650 -1.3978 -2.4422 18 6 4.2351 -0.6003 -3.5152 19 8 4.0590 0.5989 -3.4158 20 6 4.6232 -1.1651 -4.7726 21 6 4.9414 -1.6281 -5.8035 22 6 5.3404 -2.2086 -7.0960 23 6 4.8635 -3.6281 -7.4103 24 6 6.3335 -3.3723 -7.0715 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7580 1.9275 -0.9345 30 1 1.5995 1.9836 0.8375 31 1 3.1256 1.4440 0.0971 32 1 1.6017 -1.7181 -1.2977 33 1 1.7557 -0.1559 -2.1367 34 1 3.6632 -1.2933 0.9182 35 1 3.4531 -2.7140 -0.1335 36 1 5.9530 -1.5362 -0.7169 37 1 9.0681 -2.5093 -0.0266 38 1 4.2741 -2.3430 -2.5023 39 1 5.4096 -1.5053 -7.9259 40 1 4.2547 -4.1322 -6.6597 41 1 4.6189 -3.8588 -8.4471 42 1 7.0559 -3.4348 -7.8853 43 1 6.6911 -3.7082 -6.0981 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268103538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:35 Heat of formation + Delta-G solvation = 12.935481 kcal Electronic energy + Delta-G solvation = -21268.312408 eV Core-core repulsion = 18121.662174 eV Total energy + Delta-G solvation = -3146.650234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07328 -38.64856 -38.42601 -36.38472 -35.22162 -33.87299 -32.88178 -30.58456 -28.00958 -27.25330 -26.11218 -24.55772 -23.39178 -23.29750 -22.16175 -20.64454 -20.02209 -19.03421 -17.61948 -17.52153 -16.87836 -16.35146 -16.03824 -15.89903 -15.44396 -15.31499 -15.07639 -14.60041 -14.27453 -13.91826 -13.53163 -13.45640 -13.19249 -13.04559 -12.94822 -12.74197 -12.63929 -12.43496 -12.42757 -12.26392 -12.05158 -11.94448 -11.78890 -11.64435 -11.46897 -11.31332 -11.09293 -10.94247 -10.76469 -10.11518 -9.03426 -7.95145 -5.25771 0.38746 1.16354 1.47658 1.50778 1.56816 2.01872 2.26074 2.55432 3.04158 3.10030 3.39245 3.68969 3.79798 3.83318 4.01830 4.02973 4.05721 4.15708 4.18347 4.35674 4.47537 4.54910 4.73793 4.76578 4.81745 4.87046 4.92678 4.95141 4.97515 5.04116 5.08599 5.10265 5.12938 5.21411 5.33540 5.42111 5.48028 5.49643 5.54556 6.12107 6.24737 6.35428 6.99149 7.31808 8.04283 8.28247 9.27947 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.008102 B = 0.006001 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.279764 B = 4665.098862 C = 7525.811510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.109 4.109 5 C 0.143 3.857 6 H 0.068 0.932 7 C 0.148 3.852 8 N -0.745 5.745 9 C -0.245 4.245 10 H 0.081 0.919 11 C -0.074 4.074 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.274 1.274 15 H -0.299 1.299 16 H -0.278 1.278 17 N -0.693 5.693 18 C 0.633 3.367 19 O -0.568 6.568 20 C -0.268 4.268 21 C -0.029 4.029 22 C -0.088 4.088 23 C -0.141 4.141 24 C -0.158 4.158 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.093 0.907 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.678 -1.781 -11.495 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.148 4.148 5 C 0.039 3.961 6 H 0.086 0.914 7 C 0.022 3.978 8 N -0.388 5.388 9 C -0.377 4.377 10 H 0.099 0.901 11 C -0.266 4.266 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.200 1.200 15 H -0.225 1.225 16 H -0.204 1.204 17 N -0.342 5.342 18 C 0.420 3.580 19 O -0.450 6.450 20 C -0.271 4.271 21 C -0.032 4.032 22 C -0.106 4.106 23 C -0.178 4.178 24 C -0.194 4.194 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.246 0.754 39 H 0.177 0.823 40 H 0.112 0.888 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.841 -1.063 -11.215 17.082 hybrid contribution 1.237 -0.391 0.562 1.413 sum -11.605 -1.454 -10.653 15.820 Atomic orbital electron populations 1.21777 0.93355 1.02335 1.02151 1.21135 0.97052 0.95858 0.97358 1.21859 1.00252 0.96486 1.01819 1.21913 0.92290 1.01692 0.98903 1.21330 0.95249 0.97501 0.82016 0.91438 1.21148 0.84575 0.96606 0.95516 1.42560 1.02705 1.58691 1.34859 1.19612 0.90954 1.20899 1.06209 0.90090 1.25589 0.97045 1.02809 1.01183 1.69842 1.04947 1.49745 1.37604 0.85190 0.76722 0.78896 0.78794 1.20038 1.22496 1.20447 1.45830 1.65029 1.12775 1.10533 1.14853 0.76443 0.85128 0.81531 1.90781 1.53502 1.15392 1.85303 1.20690 1.07575 1.02947 0.95918 1.22231 0.91657 0.95523 0.93774 1.19327 1.08396 0.93050 0.89785 1.23249 0.96832 0.92853 1.04872 1.23235 0.93877 0.97863 1.04462 0.92790 0.91867 0.91614 0.90604 0.93233 0.91310 0.94452 0.90120 0.92392 0.93625 0.94223 0.79585 0.94099 0.75397 0.82346 0.88799 0.84310 0.84733 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.10 -2.34 2.80 -10.79 -0.03 -2.37 16 3 C -0.15 -3.90 8.83 71.98 0.64 -3.26 16 4 C -0.11 -3.05 4.39 30.59 0.13 -2.91 16 5 C 0.14 5.03 2.08 44.99 0.09 5.13 16 6 H 0.07 2.75 5.91 -2.39 -0.01 2.73 16 7 C 0.15 5.73 5.46 86.38 0.47 6.20 16 8 N -0.75 -37.55 5.43 -343.45 -1.87 -39.42 16 9 C -0.25 -13.46 9.99 84.03 0.84 -12.62 16 10 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 12 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 13 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 N -0.69 -24.93 4.54 -450.10 -2.04 -26.97 16 18 C 0.63 24.75 7.52 85.49 0.64 25.39 16 19 O -0.57 -25.49 16.78 -4.09 -0.07 -25.56 16 20 C -0.27 -9.41 13.62 30.01 0.41 -9.00 16 21 C -0.03 -0.84 13.47 31.12 0.42 -0.43 16 22 C -0.09 -1.62 6.22 -12.60 -0.08 -1.70 16 23 C -0.14 -1.90 10.21 30.60 0.31 -1.59 16 24 C -0.16 -2.49 10.21 30.60 0.31 -2.17 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.92 6.48 -2.38 -0.02 1.90 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.15 6.71 -2.39 -0.02 1.13 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.05 1.73 6.73 -2.39 -0.02 1.72 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.41 14.19 8.54 -92.71 -0.79 13.39 16 39 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.08 363.79 3.16 -67.92 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.46 Total: 41.05 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.29 Total: -5.12 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -3.63 Total: -126.09 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.08 3.16 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268103538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.856 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds