Wall clock time and date at job start Tue Mar 31 2020 00:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47038 * 121.89620 * 3 2 1 5 5 C 1.53005 * 109.47169 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47342 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00129 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99957 * 185.01419 * 8 6 5 10 10 C 1.53004 * 110.01454 * 62.41404 * 9 8 6 11 11 N 1.46495 * 109.47264 * 53.31033 * 10 9 8 12 12 C 1.36941 * 120.00323 * 174.88019 * 11 10 9 13 13 H 1.08004 * 119.99251 * 4.80912 * 12 11 10 14 14 C 1.38803 * 120.00028 * 184.81327 * 12 11 10 15 15 N 1.31631 * 119.99904 * 173.93359 * 14 12 11 16 16 Si 1.86800 * 120.00303 * 354.20995 * 14 12 11 17 17 H 1.48498 * 109.47286 * 94.17840 * 16 14 12 18 18 H 1.48498 * 109.46872 * 214.18038 * 16 14 12 19 19 H 1.48500 * 109.46802 * 334.17826 * 16 14 12 20 20 C 1.54261 * 110.07106 * 183.83170 * 9 8 6 21 21 C 1.54889 * 104.19574 * 95.70087 * 20 9 8 22 22 C 1.54887 * 102.75229 * 37.93996 * 21 20 9 23 23 C 1.53872 * 110.03246 * 301.02341 * 9 8 6 24 24 H 4.44644 * 5.63375 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47435 * 1.89394 * 3 2 1 26 26 H 1.09001 * 109.46659 * 241.89499 * 3 2 1 27 27 H 1.08999 * 109.47007 * 60.00138 * 4 3 2 28 28 H 1.09001 * 109.47297 * 299.99488 * 4 3 2 29 29 H 1.08997 * 109.47369 * 59.99734 * 5 4 3 30 30 H 1.09001 * 109.46593 * 299.99919 * 5 4 3 31 31 H 0.96999 * 119.99948 * 5.01390 * 8 6 5 32 32 H 1.08996 * 109.47119 * 293.30900 * 10 9 8 33 33 H 1.09007 * 109.46895 * 173.30922 * 10 9 8 34 34 H 0.97005 * 119.99698 * 354.88029 * 11 10 9 35 35 H 0.96999 * 120.00139 * 180.02562 * 15 14 12 36 36 H 1.09007 * 110.48205 * 214.37581 * 20 9 8 37 37 H 1.08998 * 110.49004 * 337.01631 * 20 9 8 38 38 H 1.09003 * 110.75452 * 279.62265 * 21 20 9 39 39 H 1.09000 * 110.75500 * 156.25989 * 21 20 9 40 40 H 1.08996 * 110.48510 * 203.38170 * 22 21 20 41 41 H 1.09002 * 110.48619 * 80.73212 * 22 21 20 42 42 H 1.09002 * 110.03556 * 359.95382 * 23 9 8 43 43 H 1.09005 * 110.03123 * 121.38295 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7631 -1.2247 5 6 4.6856 0.7643 -1.2244 6 6 5.1876 1.5158 -2.4303 7 8 4.3993 2.0021 -3.2132 8 7 6.5127 1.6466 -2.6393 9 6 7.0015 2.4688 -3.7490 10 6 6.5686 3.9232 -3.5534 11 7 6.9856 4.3826 -2.2263 12 6 6.7994 5.6902 -1.8646 13 1 6.2755 6.3641 -2.5263 14 6 7.2838 6.1493 -0.6476 15 7 7.2114 7.4298 -0.3512 16 14 8.0457 4.9513 0.5665 17 1 9.5179 4.9214 0.3748 18 1 7.7356 5.3865 1.9520 19 1 7.4890 3.5937 0.3377 20 6 8.5393 2.3820 -3.8347 21 6 8.7992 1.2812 -4.8929 22 6 7.6810 1.5367 -5.9338 23 6 6.4558 1.9313 -5.0835 24 1 -1.0501 0.0000 0.0003 25 1 3.0098 -1.0262 -0.0340 26 1 3.0090 0.4850 0.9065 27 1 2.7918 1.7900 -1.1906 28 1 2.7925 0.2788 -2.1312 29 1 5.0498 -0.2625 -1.2581 30 1 5.0483 1.2489 -0.3178 31 1 7.1426 1.1964 -2.0551 32 1 5.4843 3.9941 -3.6383 33 1 7.0344 4.5467 -4.3167 34 1 7.3937 3.7605 -1.6038 35 1 7.5503 7.7507 0.4992 36 1 8.9572 3.3336 -4.1636 37 1 8.9594 2.0923 -2.8716 38 1 8.6972 0.2896 -4.4518 39 1 9.7833 1.4046 -5.3450 40 1 7.4748 0.6299 -6.5024 41 1 7.9604 2.3517 -6.6015 42 1 5.8278 1.0582 -4.9057 43 1 5.8826 2.7066 -5.5919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269541951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:24 Heat of formation + Delta-G solvation = 9.802466 kcal Electronic energy + Delta-G solvation = -22188.286339 eV Core-core repulsion = 19041.500248 eV Total energy + Delta-G solvation = -3146.786091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18044 -37.83034 -35.53674 -34.45833 -33.20880 -32.27196 -31.21150 -28.92340 -28.59245 -27.42044 -24.59025 -22.68512 -21.84366 -20.72331 -20.18384 -19.08868 -18.26632 -17.57770 -16.69500 -16.00422 -15.85939 -15.02006 -14.60858 -14.38309 -14.26840 -14.11010 -13.54697 -13.30489 -13.06845 -12.74056 -12.64137 -12.45985 -12.03729 -11.77772 -11.59003 -11.31371 -11.03219 -10.99307 -10.96884 -10.91413 -10.69779 -10.56246 -10.40467 -10.28117 -10.15824 -10.13724 -9.59583 -9.39561 -8.81154 -8.62915 -7.14745 -5.73509 -3.06815 2.72891 2.77661 2.99290 3.33327 3.35094 3.42924 3.47451 4.29328 4.59459 4.60007 4.76320 4.86505 4.98756 4.98860 5.07696 5.38639 5.41129 5.46470 5.50869 5.55229 5.59628 5.61468 5.63749 5.72307 5.78875 5.88814 5.91729 5.96168 6.02879 6.11924 6.17481 6.29681 6.34938 6.41440 6.46078 6.52690 6.85100 7.04670 7.55413 7.82473 8.06109 8.45759 8.59094 9.26200 9.98264 10.20085 11.45388 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.006473 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.883896 B = 4324.669262 C = 6237.171536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C -0.015 4.015 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.519 3.481 7 O -0.532 6.532 8 N -0.719 5.719 9 C 0.165 3.835 10 C 0.151 3.849 11 N -0.750 5.750 12 C -0.236 4.236 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.883 3.117 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.279 1.279 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.216 0.784 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.394 0.606 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.358 0.642 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -19.375 -4.222 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.180 4.180 3 C -0.052 4.052 4 C -0.135 4.135 5 C -0.183 4.183 6 C 0.305 3.695 7 O -0.408 6.408 8 N -0.370 5.370 9 C 0.079 3.921 10 C 0.023 3.977 11 N -0.395 5.395 12 C -0.366 4.366 13 H 0.106 0.894 14 C -0.193 4.193 15 N -0.583 5.583 16 Si 0.714 3.286 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.206 1.206 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.232 0.768 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.227 0.773 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.531 -18.746 -4.812 19.519 hybrid contribution 0.671 -0.866 1.446 1.814 sum -1.860 -19.612 -3.366 19.986 Atomic orbital electron populations 1.24878 0.95980 1.01396 1.01179 1.23140 0.94606 1.00117 1.00187 1.18795 0.84825 1.01650 0.99892 1.21252 0.93100 1.02017 0.97182 1.21689 0.97367 1.01275 0.97993 1.20416 0.82280 0.80105 0.86688 1.90681 1.55215 1.48134 1.46741 1.46122 1.06938 1.51308 1.32672 1.21299 0.93275 0.91514 0.85993 1.21105 0.98584 0.89618 0.88358 1.42574 1.75218 1.09026 1.12725 1.19076 1.29907 0.85204 1.02411 0.89389 1.24647 1.00950 0.95543 0.98181 1.69723 1.52648 1.12095 1.23876 0.86530 0.79258 0.80978 0.81848 1.21250 1.21828 1.20582 1.22636 0.93839 1.00153 0.99272 1.22518 0.98523 0.98522 0.96603 1.22400 0.95385 1.00885 0.97634 1.22388 0.97171 1.01455 0.94323 0.76755 0.89680 0.89392 0.90415 0.90923 0.89254 0.88649 0.77262 0.94128 0.94618 0.80951 0.93199 0.89410 0.91410 0.91869 0.91611 0.92052 0.91512 0.91287 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.39 19.25 29.55 0.57 -1.82 16 2 C -0.18 -2.17 13.34 -37.12 -0.50 -2.67 16 3 C -0.02 -0.15 5.70 -29.52 -0.17 -0.32 16 4 C -0.10 -1.20 4.46 -26.73 -0.12 -1.32 16 5 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 6 C 0.52 8.05 6.98 -10.99 -0.08 7.98 16 7 O -0.53 -10.14 13.21 5.56 0.07 -10.07 16 8 N -0.72 -10.32 4.40 -46.57 -0.20 -10.52 16 9 C 0.17 2.57 0.58 -130.70 -0.08 2.49 16 10 C 0.15 3.10 4.59 -4.04 -0.02 3.09 16 11 N -0.75 -17.93 5.10 -59.91 -0.31 -18.23 16 12 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 13 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 14 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 15 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 16 Si 0.88 21.94 27.77 -169.99 -4.72 17.22 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.35 6.49 56.52 0.37 -5.99 16 20 C -0.12 -1.64 5.82 -25.07 -0.15 -1.78 16 21 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 22 C -0.13 -1.42 6.83 -25.07 -0.17 -1.59 16 23 C -0.11 -1.62 5.17 -25.61 -0.13 -1.75 16 24 H 0.22 1.60 7.80 -54.08 -0.42 1.17 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 28 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.39 4.62 8.24 -40.82 -0.34 4.28 16 32 H 0.04 0.94 6.76 -51.93 -0.35 0.59 16 33 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 34 H 0.36 8.15 5.04 -40.82 -0.21 7.94 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.09 1.30 7.75 -51.93 -0.40 0.90 16 37 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.01 6.96 -51.93 -0.36 0.65 16 43 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -34.60 350.09 -7.63 -42.24 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.11 Total: 11.13 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.42 Total: -8.04 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.26 Total: -57.74 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.60 -7.63 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269541951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.040 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds