Wall clock time and date at job start Tue Mar 31 2020 00:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47038 * 121.89620 * 3 2 1 5 5 C 1.53005 * 109.47169 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47342 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00129 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99957 * 185.01419 * 8 6 5 10 10 C 1.53004 * 110.01454 * 62.41404 * 9 8 6 11 11 N 1.46495 * 109.47264 * 53.31033 * 10 9 8 12 12 C 1.36941 * 120.00323 * 174.88019 * 11 10 9 13 13 H 1.08004 * 119.99251 * 4.80912 * 12 11 10 14 14 C 1.38803 * 120.00028 * 184.81327 * 12 11 10 15 15 N 1.31631 * 119.99904 * 173.93359 * 14 12 11 16 16 Si 1.86800 * 120.00303 * 354.20995 * 14 12 11 17 17 H 1.48498 * 109.47286 * 94.17840 * 16 14 12 18 18 H 1.48498 * 109.46872 * 214.18038 * 16 14 12 19 19 H 1.48500 * 109.46802 * 334.17826 * 16 14 12 20 20 C 1.54261 * 110.07106 * 183.83170 * 9 8 6 21 21 C 1.54889 * 104.19574 * 95.70087 * 20 9 8 22 22 C 1.54887 * 102.75229 * 37.93996 * 21 20 9 23 23 C 1.53872 * 110.03246 * 301.02341 * 9 8 6 24 24 H 4.44644 * 5.63375 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47435 * 1.89394 * 3 2 1 26 26 H 1.09001 * 109.46659 * 241.89499 * 3 2 1 27 27 H 1.08999 * 109.47007 * 60.00138 * 4 3 2 28 28 H 1.09001 * 109.47297 * 299.99488 * 4 3 2 29 29 H 1.08997 * 109.47369 * 59.99734 * 5 4 3 30 30 H 1.09001 * 109.46593 * 299.99919 * 5 4 3 31 31 H 0.96999 * 119.99948 * 5.01390 * 8 6 5 32 32 H 1.08996 * 109.47119 * 293.30900 * 10 9 8 33 33 H 1.09007 * 109.46895 * 173.30922 * 10 9 8 34 34 H 0.97005 * 119.99698 * 354.88029 * 11 10 9 35 35 H 0.96999 * 120.00139 * 180.02562 * 15 14 12 36 36 H 1.09007 * 110.48205 * 214.37581 * 20 9 8 37 37 H 1.08998 * 110.49004 * 337.01631 * 20 9 8 38 38 H 1.09003 * 110.75452 * 279.62265 * 21 20 9 39 39 H 1.09000 * 110.75500 * 156.25989 * 21 20 9 40 40 H 1.08996 * 110.48510 * 203.38170 * 22 21 20 41 41 H 1.09002 * 110.48619 * 80.73212 * 22 21 20 42 42 H 1.09002 * 110.03556 * 359.95382 * 23 9 8 43 43 H 1.09005 * 110.03123 * 121.38295 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7631 -1.2247 5 6 4.6856 0.7643 -1.2244 6 6 5.1876 1.5158 -2.4303 7 8 4.3993 2.0021 -3.2132 8 7 6.5127 1.6466 -2.6393 9 6 7.0015 2.4688 -3.7490 10 6 6.5686 3.9232 -3.5534 11 7 6.9856 4.3826 -2.2263 12 6 6.7994 5.6902 -1.8646 13 1 6.2755 6.3641 -2.5263 14 6 7.2838 6.1493 -0.6476 15 7 7.2114 7.4298 -0.3512 16 14 8.0457 4.9513 0.5665 17 1 9.5179 4.9214 0.3748 18 1 7.7356 5.3865 1.9520 19 1 7.4890 3.5937 0.3377 20 6 8.5393 2.3820 -3.8347 21 6 8.7992 1.2812 -4.8929 22 6 7.6810 1.5367 -5.9338 23 6 6.4558 1.9313 -5.0835 24 1 -1.0501 0.0000 0.0003 25 1 3.0098 -1.0262 -0.0340 26 1 3.0090 0.4850 0.9065 27 1 2.7918 1.7900 -1.1906 28 1 2.7925 0.2788 -2.1312 29 1 5.0498 -0.2625 -1.2581 30 1 5.0483 1.2489 -0.3178 31 1 7.1426 1.1964 -2.0551 32 1 5.4843 3.9941 -3.6383 33 1 7.0344 4.5467 -4.3167 34 1 7.3937 3.7605 -1.6038 35 1 7.5503 7.7507 0.4992 36 1 8.9572 3.3336 -4.1636 37 1 8.9594 2.0923 -2.8716 38 1 8.6972 0.2896 -4.4518 39 1 9.7833 1.4046 -5.3450 40 1 7.4748 0.6299 -6.5024 41 1 7.9604 2.3517 -6.6015 42 1 5.8278 1.0582 -4.9057 43 1 5.8826 2.7066 -5.5919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269541951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:24 Heat of formation + Delta-G solvation = -13.460013 kcal Electronic energy + Delta-G solvation = -22189.295076 eV Core-core repulsion = 19041.500248 eV Total energy + Delta-G solvation = -3147.794828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41382 -39.01376 -36.45026 -36.31965 -34.51884 -33.45871 -33.04048 -30.23957 -29.68760 -28.51420 -26.25948 -23.91105 -23.52013 -21.78232 -21.24138 -20.53374 -19.56061 -19.10883 -17.78151 -17.29193 -16.87863 -16.46795 -16.24988 -15.63558 -15.38205 -15.28210 -14.99331 -14.62470 -14.55647 -14.15309 -13.82972 -13.72477 -13.46649 -13.33342 -12.85721 -12.63478 -12.46217 -12.22036 -12.10448 -11.96084 -11.92809 -11.91285 -11.84971 -11.71032 -11.39481 -11.16392 -11.02626 -10.98002 -10.57838 -9.92282 -9.28296 -8.03816 -5.37385 1.32922 1.41116 1.48629 1.78800 1.85774 1.92079 2.35403 2.48051 3.25185 3.46740 3.52104 3.66981 3.77253 3.90979 3.98583 4.08636 4.17324 4.37544 4.47521 4.53675 4.60535 4.65654 4.70147 4.72908 4.78914 4.82655 4.87226 4.92301 5.07288 5.11370 5.18571 5.20435 5.21104 5.26285 5.32720 5.36198 5.50868 5.71197 5.77717 6.18961 6.71018 6.71879 7.06644 7.44374 7.80124 8.06551 9.18262 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.006473 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.883896 B = 4324.669262 C = 6237.171536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.218 4.218 3 C -0.010 4.010 4 C -0.092 4.092 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.577 6.577 8 N -0.711 5.711 9 C 0.170 3.830 10 C 0.153 3.847 11 N -0.742 5.742 12 C -0.239 4.239 13 H 0.041 0.959 14 C -0.066 4.066 15 N -0.986 5.986 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.296 1.296 19 H -0.242 1.242 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.242 0.758 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.411 0.589 32 H 0.006 0.994 33 H 0.025 0.975 34 H 0.368 0.632 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -23.382 -3.115 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.218 4.218 3 C -0.046 4.046 4 C -0.130 4.130 5 C -0.174 4.174 6 C 0.295 3.705 7 O -0.457 6.457 8 N -0.364 5.364 9 C 0.083 3.917 10 C 0.025 3.975 11 N -0.388 5.388 12 C -0.370 4.370 13 H 0.059 0.941 14 C -0.257 4.257 15 N -0.636 5.636 16 Si 0.786 3.214 17 H -0.198 1.198 18 H -0.223 1.223 19 H -0.166 1.166 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.258 0.742 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.203 0.797 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.662 -22.808 -3.720 23.119 hybrid contribution -0.039 0.518 1.006 1.132 sum -0.701 -22.290 -2.714 22.466 Atomic orbital electron populations 1.25721 0.97084 1.00643 1.00201 1.23829 0.95848 1.00960 1.01139 1.18836 0.83954 1.02964 0.98866 1.21137 0.93919 0.99953 0.98004 1.21725 0.96430 1.03261 0.95984 1.21244 0.82250 0.79691 0.87321 1.90673 1.56392 1.50002 1.48600 1.46058 1.07108 1.50679 1.32526 1.21154 0.95110 0.88172 0.87246 1.21131 0.96379 0.93477 0.86507 1.42387 1.75038 1.07268 1.14104 1.18974 1.29236 0.86790 1.02039 0.94109 1.25611 1.01938 0.97744 1.00377 1.69937 1.54220 1.14893 1.24566 0.85308 0.78689 0.79693 0.77675 1.19804 1.22310 1.16581 1.22630 0.91467 1.00661 1.01134 1.22481 0.98945 0.98187 0.95195 1.22394 0.94055 1.01761 0.97576 1.22308 0.98283 1.00342 0.93974 0.74195 0.86792 0.88491 0.94265 0.91996 0.84765 0.87697 0.75179 0.97554 0.95673 0.79744 0.93306 0.91187 0.90004 0.89900 0.89786 0.90042 0.91530 0.91648 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.61 19.25 74.32 1.43 -3.18 16 2 C -0.22 -5.03 13.34 31.13 0.42 -4.62 16 3 C -0.01 -0.18 5.70 28.79 0.16 -0.02 16 4 C -0.09 -2.19 4.46 30.59 0.14 -2.05 16 5 C -0.13 -2.76 5.70 29.85 0.17 -2.59 16 6 C 0.51 15.16 6.98 87.66 0.61 15.77 16 7 O -0.58 -22.69 13.21 -3.03 -0.04 -22.73 16 8 N -0.71 -18.78 4.40 -419.66 -1.85 -20.63 16 9 C 0.17 5.12 0.58 4.33 0.00 5.12 16 10 C 0.15 6.49 4.59 86.38 0.40 6.89 16 11 N -0.74 -35.70 5.10 -343.45 -1.75 -37.45 16 12 C -0.24 -14.35 10.47 84.03 0.88 -13.47 16 13 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 14 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 15 N -0.99 -64.68 13.97 21.65 0.30 -64.37 16 16 Si 0.96 44.44 27.77 68.60 1.91 46.35 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.24 -9.57 6.49 99.48 0.65 -8.92 16 20 C -0.12 -2.95 5.82 31.67 0.18 -2.77 16 21 C -0.11 -1.94 6.91 31.88 0.22 -1.72 16 22 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 23 C -0.11 -3.06 5.17 31.32 0.16 -2.90 16 24 H 0.24 3.20 7.80 -4.41 -0.03 3.16 16 25 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 28 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.41 7.90 8.24 -92.71 -0.76 7.14 16 32 H 0.01 0.32 6.76 -2.39 -0.02 0.30 16 33 H 0.03 1.11 8.00 -2.38 -0.02 1.10 16 34 H 0.37 16.02 5.04 -92.70 -0.47 15.55 16 35 H 0.26 16.00 8.31 -92.71 -0.77 15.22 16 36 H 0.07 1.98 7.75 -2.38 -0.02 1.96 16 37 H 0.08 1.78 7.71 -2.39 -0.02 1.76 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.86 6.96 -2.39 -0.02 1.85 16 43 H 0.05 1.55 7.67 -2.38 -0.02 1.53 16 Total: -1.00 -80.59 350.09 3.73 -76.86 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.30 Total: 33.18 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 5.46 Total: -11.21 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -3.30 Total: -122.45 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.91 Total: 46.35 kcal Total: -80.59 3.73 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269541951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.403 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds