Wall clock time and date at job start Tue Mar 31 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46971 * 2 1 4 4 C 1.47200 * 109.46971 * 120.00282 * 2 1 3 5 5 C 2.64595 * 109.46935 * 120.00136 * 2 1 3 6 6 C 4.07798 * 109.47049 * 120.00017 * 2 1 3 7 7 O 1.21612 * 119.99672 * 278.42549 * 6 5 4 8 8 N 1.34779 * 119.99923 * 98.43436 * 6 5 4 9 9 C 1.46499 * 119.99550 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.01770 * 34.93997 * 9 8 6 11 11 C 1.54264 * 110.03789 * 273.54789 * 9 8 6 12 12 C 1.54892 * 104.19651 * 217.06063 * 11 9 8 13 13 C 1.54891 * 102.74959 * 37.93955 * 12 11 9 14 14 C 1.54224 * 110.06132 * 156.31319 * 9 8 6 15 15 H 1.09004 * 110.08793 * 238.52306 * 14 9 8 16 16 C 1.52992 * 110.14449 * 0.06021 * 14 9 8 17 17 N 1.46502 * 109.47426 * 183.47935 * 16 14 9 18 18 C 1.36930 * 120.00254 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00330 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99515 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47411 * 89.99864 * 22 20 18 24 24 H 1.48501 * 109.47237 * 210.00161 * 22 20 18 25 25 H 1.48501 * 109.47549 * 330.00194 * 22 20 18 26 26 H 1.09002 * 109.47230 * 300.00101 * 1 2 3 27 27 H 1.08999 * 109.47156 * 60.00185 * 1 2 3 28 28 H 1.09005 * 109.46766 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46801 * 240.00121 * 2 1 3 30 30 H 1.08998 * 109.47423 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47755 * 300.00050 * 3 2 1 32 32 H 1.09002 * 109.47226 * 59.99897 * 3 2 1 33 33 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 34 34 H 1.08993 * 110.49070 * 98.37886 * 11 9 8 35 35 H 1.09001 * 110.59511 * 335.79254 * 11 9 8 36 36 H 1.09000 * 110.75513 * 279.62815 * 12 11 9 37 37 H 1.09002 * 110.91731 * 156.32611 * 12 11 9 38 38 H 1.09002 * 110.48740 * 80.73781 * 13 12 11 39 39 H 1.08998 * 110.48604 * 203.24665 * 13 12 11 40 40 H 1.08999 * 109.47532 * 303.48380 * 16 14 9 41 41 H 1.09002 * 109.47053 * 63.47904 * 16 14 9 42 42 H 0.96997 * 119.99641 * 0.02562 * 17 16 14 43 43 H 0.97007 * 119.99638 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8893 -1.9224 3.3297 7 8 2.4748 -1.6035 4.4276 8 7 3.7981 -2.9109 3.2133 9 6 4.2868 -3.6010 4.4096 10 1 3.4861 -3.6865 5.1443 11 6 5.4788 -2.8308 5.0143 12 6 6.4308 -3.9420 5.5223 13 6 6.3028 -5.0291 4.4264 14 6 4.8109 -5.0023 4.0350 15 1 4.2657 -5.7664 4.5891 16 6 4.6594 -5.2367 2.5307 17 7 5.0837 -6.6003 2.2037 18 6 5.0365 -7.0398 0.9077 19 1 4.6862 -6.3814 0.1266 20 6 5.4390 -8.3317 0.5978 21 7 5.3932 -8.7543 -0.6478 22 14 6.0457 -9.4702 1.9487 23 1 4.8985 -10.2282 2.5097 24 1 7.0392 -10.4201 1.3865 25 1 6.6819 -8.6676 3.0241 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 4.1285 -3.1653 2.3375 34 1 5.1476 -2.2042 5.8423 35 1 5.9707 -2.2260 4.2524 36 1 6.0975 -4.3249 6.4869 37 1 7.4558 -3.5770 5.5864 38 1 6.9270 -4.7808 3.5680 39 1 6.5752 -6.0064 4.8249 40 1 3.6161 -5.1025 2.2453 41 1 5.2792 -4.5232 1.9876 42 1 5.3980 -7.1917 2.9053 43 1 5.6749 -9.6570 -0.8644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272264290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:48 Heat of formation + Delta-G solvation = 11.279425 kcal Electronic energy + Delta-G solvation = -21259.085477 eV Core-core repulsion = 18112.363431 eV Total energy + Delta-G solvation = -3146.722045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.13015 -38.08051 -36.58164 -34.57777 -33.71070 -31.97012 -31.59382 -29.06142 -27.79054 -27.51581 -24.83057 -24.03090 -22.22700 -21.75089 -20.59645 -19.26298 -18.78392 -17.59005 -16.52267 -15.97557 -15.39063 -15.08344 -14.89969 -14.67516 -14.44519 -13.94860 -13.83898 -13.67073 -13.26053 -12.70524 -12.57245 -12.38621 -12.27990 -11.90310 -11.82231 -11.69697 -11.64742 -11.03101 -10.98834 -10.92539 -10.56329 -10.54751 -10.47367 -10.42378 -10.37707 -10.15471 -10.08333 -9.63047 -9.07192 -8.91274 -7.28604 -5.80971 -3.16932 1.54605 2.25446 3.09918 3.34531 3.37496 3.42849 3.52013 4.09937 4.53043 4.55999 4.65547 4.70333 4.80368 4.86666 4.97092 5.23577 5.27587 5.28935 5.44317 5.46767 5.49206 5.54056 5.57186 5.62003 5.69548 5.72990 5.76291 5.85529 5.87354 5.89833 5.97167 6.04825 6.17050 6.29245 6.42004 6.48351 6.57242 6.65840 7.16935 7.47507 7.93896 8.13917 8.37766 9.16580 9.88908 10.08633 11.37288 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.004329 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.164662 B = 6465.781481 C = 8112.207719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.223 4.223 6 C 0.633 3.367 7 O -0.532 6.532 8 N -0.708 5.708 9 C 0.150 3.850 10 H 0.093 0.907 11 C -0.132 4.132 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.112 4.112 15 H 0.084 0.916 16 C 0.160 3.840 17 N -0.751 5.751 18 C -0.247 4.247 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 17.562 6.210 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.203 4.203 4 C -0.078 4.078 5 C -0.226 4.226 6 C 0.420 3.580 7 O -0.411 6.411 8 N -0.361 5.361 9 C 0.045 3.955 10 H 0.111 0.889 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.131 4.131 15 H 0.102 0.898 16 C 0.032 3.968 17 N -0.397 5.397 18 C -0.377 4.377 19 H 0.107 0.893 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.051 17.755 6.746 19.421 hybrid contribution 0.606 -1.143 0.388 1.350 sum -3.446 16.612 7.134 18.405 Atomic orbital electron populations 1.21850 0.92808 1.03000 1.02736 1.18527 0.96330 0.95234 0.91011 1.21839 1.01768 0.93909 1.02774 1.22616 0.95286 0.95322 0.94587 1.20744 1.03714 1.02290 0.95819 1.14723 0.78890 0.79308 0.85115 1.90821 1.58520 1.65325 1.26401 1.46279 1.42622 1.35486 1.11728 1.21765 0.96403 0.90850 0.86445 0.88902 1.22772 0.95769 0.97932 1.00638 1.22476 0.99172 0.95864 0.98618 1.22407 0.95521 0.98834 0.98596 1.22337 0.96921 0.95236 0.98592 0.89783 1.20665 0.97413 0.87862 0.90834 1.42651 1.79780 1.10383 1.06896 1.19041 1.37141 0.97351 0.84148 0.89265 1.24664 1.01296 0.97122 0.95908 1.69701 1.53738 1.18087 1.16555 0.86551 0.78694 0.81279 0.82031 1.21064 1.21705 1.20228 0.92012 0.91190 0.91810 0.87870 0.91946 0.91170 0.92030 0.74941 0.91191 0.91111 0.91472 0.91446 0.90693 0.91489 0.95207 0.95618 0.80516 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.15 37.16 0.34 -0.75 16 2 C 0.01 0.06 3.30 -93.41 -0.31 -0.25 16 3 C -0.15 -1.01 9.15 37.16 0.34 -0.67 16 4 C -0.08 -0.92 12.56 -37.12 -0.47 -1.38 16 5 C -0.22 -3.19 13.61 -38.84 -0.53 -3.72 16 6 C 0.63 9.86 7.64 -14.33 -0.11 9.75 16 7 O -0.53 -9.70 16.76 5.27 0.09 -9.61 16 8 N -0.71 -9.98 4.45 -54.97 -0.24 -10.23 16 9 C 0.15 2.05 3.21 -66.63 -0.21 1.83 16 10 H 0.09 1.32 7.61 -51.92 -0.39 0.92 16 11 C -0.13 -1.60 6.52 -25.07 -0.16 -1.76 16 12 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 13 C -0.12 -1.59 6.01 -25.07 -0.15 -1.74 16 14 C -0.11 -1.65 2.99 -89.32 -0.27 -1.92 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 16 C 0.16 2.93 4.18 -4.04 -0.02 2.91 16 17 N -0.75 -17.32 5.23 -59.91 -0.31 -17.63 16 18 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 22 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.41 5.64 5.81 -40.82 -0.24 5.40 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.57 7.51 -51.93 -0.39 0.18 16 41 H 0.03 0.47 7.08 -51.93 -0.37 0.10 16 42 H 0.36 8.16 5.37 -40.82 -0.22 7.94 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -32.81 353.37 -8.15 -40.96 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.10 Total: 8.53 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.97 Total: -6.20 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.22 Total: -56.10 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.81 -8.15 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds