Wall clock time and date at job start Tue Mar 31 2020 00:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46971 * 2 1 4 4 C 1.47200 * 109.46971 * 120.00282 * 2 1 3 5 5 C 2.64595 * 109.46935 * 120.00136 * 2 1 3 6 6 C 4.07798 * 109.47049 * 120.00017 * 2 1 3 7 7 O 1.21612 * 119.99672 * 278.42549 * 6 5 4 8 8 N 1.34779 * 119.99923 * 98.43436 * 6 5 4 9 9 C 1.46499 * 119.99550 * 179.97438 * 8 6 5 10 10 H 1.09009 * 110.01770 * 34.93997 * 9 8 6 11 11 C 1.54264 * 110.03789 * 273.54789 * 9 8 6 12 12 C 1.54892 * 104.19651 * 217.06063 * 11 9 8 13 13 C 1.54891 * 102.74959 * 37.93955 * 12 11 9 14 14 C 1.54224 * 110.06132 * 156.31319 * 9 8 6 15 15 H 1.09004 * 110.08793 * 238.52306 * 14 9 8 16 16 C 1.52992 * 110.14449 * 0.06021 * 14 9 8 17 17 N 1.46502 * 109.47426 * 183.47935 * 16 14 9 18 18 C 1.36930 * 120.00254 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00330 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99515 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47411 * 89.99864 * 22 20 18 24 24 H 1.48501 * 109.47237 * 210.00161 * 22 20 18 25 25 H 1.48501 * 109.47549 * 330.00194 * 22 20 18 26 26 H 1.09002 * 109.47230 * 300.00101 * 1 2 3 27 27 H 1.08999 * 109.47156 * 60.00185 * 1 2 3 28 28 H 1.09005 * 109.46766 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46801 * 240.00121 * 2 1 3 30 30 H 1.08998 * 109.47423 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47755 * 300.00050 * 3 2 1 32 32 H 1.09002 * 109.47226 * 59.99897 * 3 2 1 33 33 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 34 34 H 1.08993 * 110.49070 * 98.37886 * 11 9 8 35 35 H 1.09001 * 110.59511 * 335.79254 * 11 9 8 36 36 H 1.09000 * 110.75513 * 279.62815 * 12 11 9 37 37 H 1.09002 * 110.91731 * 156.32611 * 12 11 9 38 38 H 1.09002 * 110.48740 * 80.73781 * 13 12 11 39 39 H 1.08998 * 110.48604 * 203.24665 * 13 12 11 40 40 H 1.08999 * 109.47532 * 303.48380 * 16 14 9 41 41 H 1.09002 * 109.47053 * 63.47904 * 16 14 9 42 42 H 0.96997 * 119.99641 * 0.02562 * 17 16 14 43 43 H 0.97007 * 119.99638 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1604 6 6 2.8893 -1.9224 3.3297 7 8 2.4748 -1.6035 4.4276 8 7 3.7981 -2.9109 3.2133 9 6 4.2868 -3.6010 4.4096 10 1 3.4861 -3.6865 5.1443 11 6 5.4788 -2.8308 5.0143 12 6 6.4308 -3.9420 5.5223 13 6 6.3028 -5.0291 4.4264 14 6 4.8109 -5.0023 4.0350 15 1 4.2657 -5.7664 4.5891 16 6 4.6594 -5.2367 2.5307 17 7 5.0837 -6.6003 2.2037 18 6 5.0365 -7.0398 0.9077 19 1 4.6862 -6.3814 0.1266 20 6 5.4390 -8.3317 0.5978 21 7 5.3932 -8.7543 -0.6478 22 14 6.0457 -9.4702 1.9487 23 1 4.8985 -10.2282 2.5097 24 1 7.0392 -10.4201 1.3865 25 1 6.6819 -8.6676 3.0241 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 4.1285 -3.1653 2.3375 34 1 5.1476 -2.2042 5.8423 35 1 5.9707 -2.2260 4.2524 36 1 6.0975 -4.3249 6.4869 37 1 7.4558 -3.5770 5.5864 38 1 6.9270 -4.7808 3.5680 39 1 6.5752 -6.0064 4.8249 40 1 3.6161 -5.1025 2.2453 41 1 5.2792 -4.5232 1.9876 42 1 5.3980 -7.1917 2.9053 43 1 5.6749 -9.6570 -0.8644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272264290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:47 Heat of formation + Delta-G solvation = -9.172176 kcal Electronic energy + Delta-G solvation = -21259.972325 eV Core-core repulsion = 18112.363431 eV Total energy + Delta-G solvation = -3147.608893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32836 -39.30957 -37.34349 -36.39112 -34.87311 -33.58509 -32.91893 -30.59658 -28.86502 -28.08124 -26.42847 -25.04613 -24.00482 -22.67956 -21.61656 -20.67139 -20.00826 -19.41979 -17.60493 -17.00601 -16.65799 -16.43887 -16.15594 -15.81974 -15.60666 -15.49035 -15.12300 -14.70248 -14.58024 -14.35754 -13.66948 -13.52960 -13.12335 -13.06050 -12.91980 -12.85154 -12.54507 -12.37897 -12.32748 -12.07943 -11.97052 -11.83546 -11.78320 -11.62836 -11.53628 -11.47490 -11.38659 -11.19574 -10.98706 -10.20488 -9.31847 -8.03396 -5.37357 0.43677 1.21569 1.38268 1.41677 1.49033 2.01744 2.40210 2.48337 3.09329 3.28099 3.35403 3.63568 3.75347 3.96298 4.02975 4.08341 4.15386 4.32245 4.41140 4.44461 4.45900 4.53506 4.57552 4.73386 4.76961 4.85394 4.91196 4.92151 4.94567 5.04881 5.09417 5.17978 5.20839 5.29264 5.29596 5.32399 5.42987 5.47432 5.74158 6.15733 6.19920 6.29045 6.94645 7.06958 7.81928 8.01883 9.17904 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.004329 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.164662 B = 6465.781481 C = 8112.207719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.143 4.143 4 C -0.046 4.046 5 C -0.277 4.277 6 C 0.634 3.366 7 O -0.566 6.566 8 N -0.703 5.703 9 C 0.151 3.849 10 H 0.089 0.911 11 C -0.128 4.128 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.103 4.103 15 H 0.088 0.912 16 C 0.159 3.841 17 N -0.752 5.752 18 C -0.237 4.237 19 H 0.057 0.943 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.953 3.047 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.246 1.246 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.031 0.969 42 H 0.368 0.632 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 18.458 7.442 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 C -0.200 4.200 4 C -0.048 4.048 5 C -0.280 4.280 6 C 0.422 3.578 7 O -0.447 6.447 8 N -0.355 5.355 9 C 0.046 3.954 10 H 0.107 0.893 11 C -0.166 4.166 12 C -0.149 4.149 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.106 0.894 16 C 0.033 3.967 17 N -0.398 5.398 18 C -0.368 4.368 19 H 0.075 0.925 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.780 3.220 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.171 1.171 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.584 18.686 8.012 20.644 hybrid contribution 0.379 -1.308 -0.128 1.368 sum -3.205 17.378 7.884 19.350 Atomic orbital electron populations 1.21866 0.91760 1.02761 1.03845 1.18904 0.97137 0.96025 0.89693 1.21847 1.01592 0.92714 1.03825 1.23539 0.93180 0.93606 0.94486 1.20783 1.05997 1.04317 0.96897 1.14860 0.78572 0.79225 0.85128 1.90785 1.59772 1.66472 1.27658 1.46272 1.42172 1.35066 1.11973 1.21818 0.96963 0.90420 0.86172 0.89311 1.22733 0.95108 0.98119 1.00645 1.22433 0.99882 0.94343 0.98202 1.22395 0.93993 0.99945 0.99065 1.22254 0.98278 0.96009 0.95673 0.89407 1.20792 0.96682 0.85606 0.93669 1.42622 1.79811 1.12227 1.05167 1.19030 1.35438 0.96845 0.85470 0.92498 1.25497 1.02390 0.99045 0.98387 1.69884 1.55764 1.18533 1.19159 0.85434 0.78072 0.78920 0.79552 1.20672 1.22295 1.17053 0.92474 0.88563 0.92741 0.86280 0.92260 0.88629 0.92508 0.74857 0.90742 0.91199 0.89999 0.89830 0.91924 0.91225 0.95982 0.95157 0.79896 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.15 71.98 0.66 -1.23 16 2 C 0.00 0.00 3.30 -12.60 -0.04 -0.04 16 3 C -0.14 -1.68 9.15 71.98 0.66 -1.02 16 4 C -0.05 -1.09 12.56 31.13 0.39 -0.70 16 5 C -0.28 -8.07 13.61 30.02 0.41 -7.66 16 6 C 0.63 20.15 7.64 85.49 0.65 20.80 16 7 O -0.57 -21.00 16.76 -4.07 -0.07 -21.07 16 8 N -0.70 -19.86 4.45 -446.09 -1.99 -21.85 16 9 C 0.15 3.96 3.21 45.83 0.15 4.11 16 10 H 0.09 2.45 7.61 -2.38 -0.02 2.43 16 11 C -0.13 -2.84 6.52 31.67 0.21 -2.63 16 12 C -0.11 -2.16 6.91 31.89 0.22 -1.94 16 13 C -0.12 -2.92 6.01 31.67 0.19 -2.73 16 14 C -0.10 -2.89 2.99 -9.95 -0.03 -2.92 16 15 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 16 C 0.16 5.74 4.18 86.38 0.36 6.10 16 17 N -0.75 -34.05 5.23 -343.46 -1.80 -35.85 16 18 C -0.24 -13.32 10.47 84.04 0.88 -12.44 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 20 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 21 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 22 Si 0.95 44.62 27.73 68.60 1.90 46.53 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.41 11.42 5.81 -92.71 -0.54 10.88 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.74 7.78 -2.39 -0.02 1.72 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.02 0.85 7.51 -2.39 -0.02 0.83 16 41 H 0.03 1.09 7.08 -2.39 -0.02 1.07 16 42 H 0.37 15.79 5.37 -92.71 -0.50 15.29 16 43 H 0.26 15.63 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -71.89 353.37 3.43 -68.46 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.09 Total: 31.39 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.17 Total: -5.41 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -3.48 Total: -119.90 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.07 Total: -21.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.53 kcal Total: -71.89 3.43 -68.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.287 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds