Wall clock time and date at job start Tue Mar 31 2020 00:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 C 1.47206 * 109.47127 * 120.00345 * 2 1 3 5 5 C 2.64605 * 109.47010 * 120.00152 * 2 1 3 6 6 C 4.07805 * 109.47086 * 120.00153 * 2 1 3 7 7 O 1.21609 * 119.99980 * 332.58249 * 6 5 4 8 8 N 1.34781 * 119.99781 * 152.58286 * 6 5 4 9 9 C 1.46496 * 119.99848 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.54068 * 327.61553 * 9 8 6 11 11 C 1.54886 * 110.48781 * 90.22657 * 9 8 6 12 12 C 1.54890 * 102.75219 * 156.61998 * 11 9 8 13 13 C 1.54261 * 104.19279 * 322.05883 * 12 11 9 14 14 C 1.53879 * 106.60145 * 23.61022 * 13 12 11 15 15 H 1.08998 * 110.02823 * 240.66511 * 14 13 12 16 16 C 1.53000 * 110.03151 * 119.28362 * 14 13 12 17 17 N 1.46499 * 109.47100 * 66.45657 * 16 14 13 18 18 C 1.36939 * 119.99547 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00716 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99459 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99668 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99848 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99841 * 22 20 18 26 26 H 1.09004 * 109.47402 * 299.99726 * 1 2 3 27 27 H 1.09002 * 109.47038 * 59.99933 * 1 2 3 28 28 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47089 * 239.99641 * 2 1 3 30 30 H 1.08998 * 109.46748 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47523 * 300.00194 * 3 2 1 32 32 H 1.09004 * 109.46824 * 60.00447 * 3 2 1 33 33 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 34 34 H 1.09004 * 110.75463 * 38.30063 * 11 9 8 35 35 H 1.09003 * 110.75984 * 274.93549 * 11 9 8 36 36 H 1.09000 * 110.48512 * 203.38037 * 12 11 9 37 37 H 1.09000 * 110.48498 * 80.73507 * 12 11 9 38 38 H 1.09005 * 110.03670 * 264.32218 * 13 12 11 39 39 H 1.09008 * 110.07380 * 142.91522 * 13 12 11 40 40 H 1.08994 * 109.47445 * 306.45328 * 16 14 13 41 41 H 1.08999 * 109.46641 * 186.45458 * 16 14 13 42 42 H 0.96998 * 120.00185 * 359.97438 * 17 16 14 43 43 H 0.96993 * 120.00007 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9225 3.3297 7 8 2.1001 -2.4256 4.1061 8 7 4.2133 -2.0003 3.5695 9 6 4.7017 -2.6904 4.7659 10 1 3.9941 -2.5786 5.5876 11 6 4.9493 -4.1892 4.4641 12 6 5.9791 -4.5909 5.5491 13 6 6.9015 -3.3603 5.6692 14 6 6.0893 -2.1518 5.1713 15 1 6.5816 -1.7004 4.3100 16 6 5.9442 -1.1203 6.2919 17 7 7.2581 -0.5542 6.6076 18 6 7.3767 0.3968 7.5857 19 1 6.5018 0.7299 8.1241 20 6 8.6217 0.9328 7.8851 21 7 9.6881 0.5265 7.2293 22 14 8.7835 2.2306 9.2189 23 1 8.6230 3.5796 8.6190 24 1 10.1231 2.1263 9.8513 25 1 7.7330 2.0179 10.2467 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 4.8428 -1.5987 2.9504 34 1 5.3691 -4.3181 3.4664 35 1 4.0289 -4.7627 4.5740 36 1 6.5480 -5.4644 5.2304 37 1 5.4779 -4.7860 6.4971 38 1 7.7876 -3.4957 5.0490 39 1 7.1930 -3.2113 6.7090 40 1 5.5338 -1.6026 7.1789 41 1 5.2738 -0.3241 5.9682 42 1 8.0439 -0.8530 6.1238 43 1 9.6040 -0.1471 6.5366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272264293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:51 Heat of formation + Delta-G solvation = -0.589386 kcal Electronic energy + Delta-G solvation = -20971.679403 eV Core-core repulsion = 17824.442687 eV Total energy + Delta-G solvation = -3147.236716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02735 -38.08556 -36.68783 -34.75225 -33.73436 -32.07001 -31.42378 -28.39192 -27.82114 -27.60029 -24.62916 -23.79455 -22.45822 -21.76061 -20.54659 -19.92231 -18.37996 -17.24570 -16.70636 -16.33659 -15.31770 -15.16061 -14.85247 -14.75769 -14.27433 -13.89644 -13.70592 -13.60421 -13.28961 -12.93288 -12.65339 -12.43626 -12.33866 -12.05526 -11.86549 -11.78270 -11.23844 -10.93145 -10.77358 -10.75261 -10.66141 -10.51866 -10.50079 -10.46018 -10.26213 -10.11283 -10.00192 -9.23450 -9.00814 -8.86575 -6.98936 -6.09675 -3.08866 1.45653 2.12760 2.98669 3.43835 3.52737 3.57565 3.71607 3.99623 4.54318 4.56236 4.68326 4.70370 4.75944 4.78079 5.01762 5.13636 5.21002 5.39301 5.41396 5.44304 5.48802 5.54297 5.59237 5.62098 5.66700 5.75867 5.79415 5.81414 5.84811 5.99319 6.04067 6.15789 6.21750 6.39647 6.44005 6.55804 6.71872 6.82810 7.05171 7.38473 7.83268 8.06286 8.77156 9.24356 10.10671 10.25914 11.39189 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.003639 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.326197 B = 7692.523791 C = 9123.615248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.221 4.221 6 C 0.633 3.367 7 O -0.526 6.526 8 N -0.705 5.705 9 C 0.146 3.854 10 H 0.101 0.899 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.116 4.116 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.166 3.834 17 N -0.742 5.742 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.288 1.288 25 H -0.295 1.295 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.367 0.633 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 -5.536 -15.766 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.081 4.081 5 C -0.223 4.223 6 C 0.419 3.581 7 O -0.404 6.404 8 N -0.355 5.355 9 C 0.042 3.958 10 H 0.119 0.881 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.154 4.154 14 C -0.124 4.124 15 H 0.094 0.906 16 C 0.038 3.962 17 N -0.388 5.388 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.243 4.243 21 N -0.591 5.591 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.214 1.214 25 H -0.221 1.221 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.200 0.800 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.629 -4.835 -14.222 20.283 hybrid contribution -0.566 -0.822 -1.279 1.622 sum -14.195 -5.658 -15.501 21.767 Atomic orbital electron populations 1.21860 0.92881 1.02835 1.02884 1.18512 0.96307 0.95322 0.90777 1.21853 1.01920 0.93721 1.02961 1.22630 0.97585 0.93893 0.94026 1.20787 1.02652 1.02530 0.96380 1.14700 0.82623 0.78674 0.82076 1.90847 1.55612 1.46995 1.46924 1.45933 1.06147 1.57063 1.26359 1.22010 0.96009 0.90933 0.86882 0.88137 1.22871 0.99476 0.95405 0.99390 1.22309 0.96943 0.97984 0.98684 1.22142 0.97553 0.92838 1.02838 1.22217 0.93634 0.96886 0.99619 0.90646 1.20670 0.89163 0.92748 0.93610 1.42352 1.03393 1.48368 1.44689 1.20075 0.95977 1.16567 1.13498 0.91791 1.25767 0.91309 1.03332 1.03925 1.70853 1.29600 1.32964 1.25723 0.83197 0.75311 0.75156 0.74989 1.22349 1.21377 1.22143 0.91871 0.91215 0.91982 0.88095 0.91790 0.91136 0.91849 0.76144 0.91290 0.91204 0.91591 0.91376 0.91876 0.90250 0.95914 0.96409 0.79997 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.15 37.16 0.34 -0.59 16 2 C 0.01 0.06 3.30 -93.40 -0.31 -0.24 16 3 C -0.15 -0.96 9.15 37.16 0.34 -0.62 16 4 C -0.08 -0.87 12.56 -37.12 -0.47 -1.34 16 5 C -0.22 -2.95 13.61 -38.84 -0.53 -3.48 16 6 C 0.63 9.62 7.65 -14.33 -0.11 9.51 16 7 O -0.53 -9.73 16.73 5.27 0.09 -9.65 16 8 N -0.71 -9.42 5.15 -54.63 -0.28 -9.70 16 9 C 0.15 2.09 2.75 -66.28 -0.18 1.91 16 10 H 0.10 1.63 7.27 -51.92 -0.38 1.25 16 11 C -0.13 -1.64 6.58 -24.74 -0.16 -1.81 16 12 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 13 C -0.12 -1.73 6.13 -25.61 -0.16 -1.88 16 14 C -0.10 -1.65 2.71 -89.50 -0.24 -1.89 16 15 H 0.08 1.17 7.73 -51.93 -0.40 0.77 16 16 C 0.17 3.42 5.29 -4.04 -0.02 3.40 16 17 N -0.74 -18.83 5.34 -59.91 -0.32 -19.15 16 18 C -0.33 -9.50 9.99 -15.06 -0.15 -9.65 16 19 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 21 N -0.95 -29.38 13.70 55.49 0.76 -28.62 16 22 Si 1.08 26.34 29.92 -169.99 -5.09 21.25 16 23 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 4.57 8.33 -40.82 -0.34 4.23 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.38 7.58 -51.92 -0.39 0.99 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.37 9.38 6.34 -40.82 -0.26 9.12 16 43 H 0.25 7.74 6.77 -40.82 -0.28 7.47 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -34.09 359.18 -8.51 -42.60 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.17 Total: 7.66 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.92 Total: -9.81 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.16 Total: -57.47 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -5.09 Total: 21.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.09 -8.51 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds