Wall clock time and date at job start Tue Mar 31 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 C 1.47206 * 109.47127 * 120.00345 * 2 1 3 5 5 C 2.64605 * 109.47010 * 120.00152 * 2 1 3 6 6 C 4.07805 * 109.47086 * 120.00153 * 2 1 3 7 7 O 1.21609 * 119.99980 * 332.58249 * 6 5 4 8 8 N 1.34781 * 119.99781 * 152.58286 * 6 5 4 9 9 C 1.46496 * 119.99848 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.54068 * 327.61553 * 9 8 6 11 11 C 1.54886 * 110.48781 * 90.22657 * 9 8 6 12 12 C 1.54890 * 102.75219 * 156.61998 * 11 9 8 13 13 C 1.54261 * 104.19279 * 322.05883 * 12 11 9 14 14 C 1.53879 * 106.60145 * 23.61022 * 13 12 11 15 15 H 1.08998 * 110.02823 * 240.66511 * 14 13 12 16 16 C 1.53000 * 110.03151 * 119.28362 * 14 13 12 17 17 N 1.46499 * 109.47100 * 66.45657 * 16 14 13 18 18 C 1.36939 * 119.99547 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00716 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99459 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99635 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99668 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99848 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99841 * 22 20 18 26 26 H 1.09004 * 109.47402 * 299.99726 * 1 2 3 27 27 H 1.09002 * 109.47038 * 59.99933 * 1 2 3 28 28 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47089 * 239.99641 * 2 1 3 30 30 H 1.08998 * 109.46748 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47523 * 300.00194 * 3 2 1 32 32 H 1.09004 * 109.46824 * 60.00447 * 3 2 1 33 33 H 0.96996 * 120.00050 * 0.02562 * 8 6 5 34 34 H 1.09004 * 110.75463 * 38.30063 * 11 9 8 35 35 H 1.09003 * 110.75984 * 274.93549 * 11 9 8 36 36 H 1.09000 * 110.48512 * 203.38037 * 12 11 9 37 37 H 1.09000 * 110.48498 * 80.73507 * 12 11 9 38 38 H 1.09005 * 110.03670 * 264.32218 * 13 12 11 39 39 H 1.09008 * 110.07380 * 142.91522 * 13 12 11 40 40 H 1.08994 * 109.47445 * 306.45328 * 16 14 13 41 41 H 1.08999 * 109.46641 * 186.45458 * 16 14 13 42 42 H 0.96998 * 120.00185 * 359.97438 * 17 16 14 43 43 H 0.96993 * 120.00007 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9225 3.3297 7 8 2.1001 -2.4256 4.1061 8 7 4.2133 -2.0003 3.5695 9 6 4.7017 -2.6904 4.7659 10 1 3.9941 -2.5786 5.5876 11 6 4.9493 -4.1892 4.4641 12 6 5.9791 -4.5909 5.5491 13 6 6.9015 -3.3603 5.6692 14 6 6.0893 -2.1518 5.1713 15 1 6.5816 -1.7004 4.3100 16 6 5.9442 -1.1203 6.2919 17 7 7.2581 -0.5542 6.6076 18 6 7.3767 0.3968 7.5857 19 1 6.5018 0.7299 8.1241 20 6 8.6217 0.9328 7.8851 21 7 9.6881 0.5265 7.2293 22 14 8.7835 2.2306 9.2189 23 1 8.6230 3.5796 8.6190 24 1 10.1231 2.1263 9.8513 25 1 7.7330 2.0179 10.2467 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 4.8428 -1.5987 2.9504 34 1 5.3691 -4.3181 3.4664 35 1 4.0289 -4.7627 4.5740 36 1 6.5480 -5.4644 5.2304 37 1 5.4779 -4.7860 6.4971 38 1 7.7876 -3.4957 5.0490 39 1 7.1930 -3.2113 6.7090 40 1 5.5338 -1.6026 7.1789 41 1 5.2738 -0.3241 5.9682 42 1 8.0439 -0.8530 6.1238 43 1 9.6040 -0.1471 6.5366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272264293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:50 Heat of formation + Delta-G solvation = -22.266190 kcal Electronic energy + Delta-G solvation = -20972.619379 eV Core-core repulsion = 17824.442687 eV Total energy + Delta-G solvation = -3148.176693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23777 -39.37708 -37.36287 -36.67522 -34.97770 -33.33146 -32.93992 -30.05103 -28.96640 -28.09159 -26.23624 -25.17611 -24.12856 -22.64487 -21.72893 -21.13207 -19.71651 -19.21317 -17.92245 -17.13812 -16.92553 -16.34066 -15.95599 -15.88284 -15.59736 -15.50115 -15.11079 -14.93889 -14.48012 -14.33061 -13.76478 -13.30672 -13.12942 -12.97774 -12.79611 -12.66141 -12.61946 -12.44311 -12.36409 -12.05810 -11.94276 -11.88989 -11.83982 -11.64242 -11.43495 -11.34060 -11.27004 -11.25505 -10.96566 -10.24032 -9.15058 -8.43681 -5.37350 0.41266 1.17503 1.56571 1.66981 1.81898 1.94226 2.37938 2.67797 3.09245 3.33017 3.36163 3.56366 3.76041 3.96314 4.02215 4.08359 4.13715 4.29483 4.34712 4.36477 4.39559 4.48197 4.53473 4.64045 4.75404 4.85089 4.90977 4.91322 4.92868 5.00702 5.03671 5.07894 5.17456 5.23308 5.29907 5.31784 5.37365 5.43987 5.54574 6.12995 6.27992 6.47626 6.93124 7.06088 7.96041 8.07573 9.08742 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.003639 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.326197 B = 7692.523791 C = 9123.615248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.004 3.996 3 C -0.146 4.146 4 C -0.041 4.041 5 C -0.276 4.276 6 C 0.634 3.366 7 O -0.569 6.569 8 N -0.695 5.695 9 C 0.150 3.850 10 H 0.078 0.922 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.113 4.113 14 C -0.092 4.092 15 H 0.082 0.918 16 C 0.167 3.833 17 N -0.750 5.750 18 C -0.340 4.340 19 H 0.060 0.940 20 C -0.100 4.100 21 N -0.971 5.971 22 Si 1.129 2.871 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.014 0.986 41 H 0.006 0.994 42 H 0.364 0.636 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 -5.447 -17.598 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 C -0.204 4.204 4 C -0.043 4.043 5 C -0.279 4.279 6 C 0.422 3.578 7 O -0.450 6.450 8 N -0.345 5.345 9 C 0.045 3.955 10 H 0.096 0.904 11 C -0.160 4.160 12 C -0.150 4.150 13 C -0.151 4.151 14 C -0.111 4.111 15 H 0.101 0.899 16 C 0.040 3.960 17 N -0.395 5.395 18 C -0.471 4.471 19 H 0.078 0.922 20 C -0.291 4.291 21 N -0.619 5.619 22 Si 0.954 3.046 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.202 1.202 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.252 0.748 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.024 0.976 42 H 0.197 0.803 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.196 -4.757 -16.086 21.976 hybrid contribution -0.458 -0.812 -0.785 1.219 sum -14.655 -5.569 -16.871 23.031 Atomic orbital electron populations 1.21882 0.91954 1.02896 1.03654 1.18899 0.96979 0.95622 0.89824 1.21874 1.01713 0.93113 1.03659 1.23542 0.95296 0.91813 0.93695 1.20626 1.05154 1.04784 0.97332 1.14901 0.82610 0.78107 0.82203 1.90810 1.56585 1.49063 1.48575 1.45835 1.06010 1.56608 1.26031 1.21869 0.94277 0.92570 0.86786 0.90358 1.22807 0.99643 0.93263 1.00300 1.22276 0.96457 0.97514 0.98767 1.22086 0.98393 0.93544 1.01093 1.22065 0.95024 0.96074 0.97943 0.89942 1.20744 0.86830 0.93379 0.95006 1.42479 1.04900 1.48051 1.44110 1.20389 0.95927 1.16913 1.13895 0.92235 1.27199 0.91080 1.05172 1.05653 1.70958 1.30464 1.33850 1.26635 0.82600 0.75600 0.73324 0.73072 1.20996 1.21532 1.20205 0.93065 0.88545 0.92310 0.85324 0.92162 0.88558 0.93096 0.74843 0.89496 0.91033 0.89127 0.91580 0.90763 0.93156 0.96790 0.97590 0.80299 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.15 71.98 0.66 -0.85 16 2 C 0.00 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.54 9.15 71.98 0.66 -0.89 16 4 C -0.04 -0.85 12.56 31.13 0.39 -0.46 16 5 C -0.28 -7.38 13.61 30.02 0.41 -6.97 16 6 C 0.63 19.66 7.65 85.49 0.65 20.31 16 7 O -0.57 -21.81 16.73 -4.06 -0.07 -21.88 16 8 N -0.70 -18.54 5.15 -445.02 -2.29 -20.83 16 9 C 0.15 4.28 2.75 46.06 0.13 4.40 16 10 H 0.08 2.62 7.27 -2.38 -0.02 2.61 16 11 C -0.12 -2.82 6.58 31.88 0.21 -2.61 16 12 C -0.11 -2.60 6.83 31.67 0.22 -2.38 16 13 C -0.11 -3.31 6.13 31.32 0.19 -3.12 16 14 C -0.09 -2.90 2.71 -10.07 -0.03 -2.93 16 15 H 0.08 2.51 7.73 -2.39 -0.02 2.50 16 16 C 0.17 7.09 5.29 86.38 0.46 7.55 16 17 N -0.75 -38.86 5.34 -343.46 -1.83 -40.69 16 18 C -0.34 -19.82 9.99 84.03 0.84 -18.98 16 19 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 20 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 21 N -0.97 -60.92 13.70 21.65 0.30 -60.62 16 22 Si 1.13 52.88 29.92 68.60 2.05 54.94 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.41 9.14 8.33 -92.71 -0.77 8.37 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.78 7.58 -2.38 -0.02 1.76 16 40 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.36 19.05 6.34 -92.71 -0.59 18.46 16 43 H 0.25 15.26 6.77 -92.71 -0.63 14.63 16 Total: -1.00 -74.86 359.18 3.15 -71.71 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.22 Total: 29.70 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.21 Total: -12.32 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.83 Total: -122.15 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.07 Total: -21.88 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.05 Total: 54.94 kcal Total: -74.86 3.15 -71.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds