Wall clock time and date at job start Tue Mar 31 2020 00:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46927 * 2 1 4 4 C 1.47203 * 109.47028 * 119.99796 * 2 1 3 5 5 C 2.64601 * 109.47300 * 119.99984 * 2 1 3 6 6 C 4.07801 * 109.47323 * 119.99852 * 2 1 3 7 7 O 1.21616 * 119.99733 * 184.45119 * 6 5 4 8 8 N 1.34775 * 120.00245 * 4.45882 * 6 5 4 9 9 C 1.46501 * 120.00050 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.81639 * 31.66428 * 9 8 6 11 11 C 1.54890 * 110.75623 * 268.32613 * 9 8 6 12 12 C 1.54267 * 104.19573 * 203.74213 * 11 9 8 13 13 C 1.53876 * 106.59937 * 23.61105 * 12 11 9 14 14 C 1.54271 * 106.59824 * 0.02562 * 13 12 11 15 15 H 1.08994 * 110.49186 * 95.20050 * 14 13 12 16 16 C 1.53003 * 110.48439 * 217.71487 * 14 13 12 17 17 N 1.46498 * 109.46778 * 293.54026 * 16 14 13 18 18 C 1.36936 * 119.99972 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99631 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00202 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00201 * 179.72570 * 20 18 17 23 23 H 1.48494 * 109.47228 * 180.27680 * 22 20 18 24 24 H 1.48500 * 109.47000 * 300.27564 * 22 20 18 25 25 H 1.48493 * 109.46907 * 60.27455 * 22 20 18 26 26 H 1.08999 * 109.47626 * 60.00092 * 1 2 3 27 27 H 1.09003 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47043 * 299.99834 * 1 2 3 29 29 H 1.08999 * 109.47043 * 240.00166 * 2 1 3 30 30 H 1.08992 * 109.46834 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46893 * 300.00357 * 3 2 1 32 32 H 1.09007 * 109.46854 * 60.00021 * 3 2 1 33 33 H 0.97003 * 119.99888 * 359.97438 * 8 6 5 34 34 H 1.09001 * 110.48626 * 85.06230 * 11 9 8 35 35 H 1.09004 * 110.48434 * 322.42548 * 11 9 8 36 36 H 1.08994 * 110.03056 * 264.32347 * 12 11 9 37 37 H 1.08999 * 110.03168 * 142.89310 * 12 11 9 38 38 H 1.09000 * 110.03333 * 240.71609 * 13 12 11 39 39 H 1.08996 * 110.03408 * 119.27934 * 13 12 11 40 40 H 1.08998 * 109.46943 * 173.54745 * 16 14 13 41 41 H 1.08994 * 109.47116 * 53.54356 * 16 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99717 * 359.71965 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4121 -1.2473 2.1604 6 6 2.8895 -1.9223 3.3297 7 8 3.9110 -1.5480 3.8734 8 7 2.2069 -2.9723 3.8276 9 6 2.6957 -3.6632 5.0235 10 1 3.2138 -2.9704 5.6864 11 6 3.6179 -4.8457 4.6359 12 6 3.5453 -5.7955 5.8493 13 6 2.2190 -5.4907 6.5675 14 6 1.5316 -4.3667 5.7650 15 1 0.8205 -4.7860 5.0533 16 6 0.8292 -3.3880 6.7082 17 7 -0.2841 -4.0670 7.3758 18 6 -1.0630 -3.3856 8.2726 19 1 -0.8567 -2.3475 8.4874 20 6 -2.1175 -4.0292 8.9056 21 7 -2.3685 -5.2945 8.6442 22 14 -3.1752 -3.1018 10.1347 23 1 -4.2217 -4.0087 10.6707 24 1 -2.3250 -2.6132 11.2499 25 1 -3.8195 -1.9462 9.4605 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.3920 -3.2707 3.3941 34 1 4.6399 -4.4985 4.4837 35 1 3.2454 -5.3422 3.7398 36 1 4.3843 -5.6095 6.5197 37 1 3.5582 -6.8323 5.5132 38 1 2.4143 -5.1567 7.5865 39 1 1.5882 -6.3795 6.5798 40 1 0.4481 -2.5421 6.1361 41 1 1.5380 -3.0315 7.4555 42 1 -0.4691 -4.9995 7.1832 43 1 -1.8191 -5.7762 8.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272264295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:54 Heat of formation + Delta-G solvation = -1.542548 kcal Electronic energy + Delta-G solvation = -21002.372358 eV Core-core repulsion = 17855.094310 eV Total energy + Delta-G solvation = -3147.278048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00170 -38.05545 -36.67591 -34.74602 -33.75416 -32.05993 -31.45234 -28.40303 -27.83085 -27.58649 -24.60542 -23.80866 -22.41973 -21.77081 -20.51674 -19.88170 -18.44638 -17.24934 -16.69058 -16.34671 -15.35012 -15.18259 -14.80671 -14.72806 -14.17908 -13.88736 -13.68648 -13.50965 -13.32381 -13.17772 -12.63915 -12.39688 -12.31718 -12.12558 -11.82722 -11.78345 -11.20110 -11.04383 -10.76898 -10.72578 -10.64324 -10.54225 -10.44481 -10.43029 -10.25623 -10.14669 -9.97090 -9.22347 -9.00476 -8.86857 -6.98965 -6.09570 -3.08723 1.46637 2.13422 2.99739 3.44763 3.52655 3.56239 3.73577 3.99783 4.54713 4.57514 4.69219 4.70050 4.76532 4.79470 4.97687 5.14654 5.22376 5.37133 5.40855 5.45055 5.50539 5.54441 5.61507 5.62095 5.66217 5.74137 5.81028 5.82660 5.84604 5.99171 6.04139 6.15228 6.22107 6.37234 6.47207 6.52448 6.70511 6.82392 7.06283 7.39458 7.82490 8.06848 8.77163 9.24444 10.10790 10.26058 11.39190 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.003849 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.133341 B = 7272.437876 C = 8892.340569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.009 3.991 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.221 4.221 6 C 0.633 3.367 7 O -0.527 6.527 8 N -0.704 5.704 9 C 0.146 3.854 10 H 0.102 0.898 11 C -0.133 4.133 12 C -0.121 4.121 13 C -0.112 4.112 14 C -0.104 4.104 15 H 0.078 0.922 16 C 0.166 3.834 17 N -0.742 5.742 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.945 5.945 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.296 1.296 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.018 0.982 41 H 0.022 0.978 42 H 0.367 0.633 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.673 5.699 -18.144 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.081 4.081 5 C -0.224 4.224 6 C 0.420 3.580 7 O -0.405 6.405 8 N -0.354 5.354 9 C 0.041 3.959 10 H 0.120 0.880 11 C -0.171 4.171 12 C -0.160 4.160 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.096 0.904 16 C 0.038 3.962 17 N -0.388 5.388 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.591 5.591 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.200 0.800 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.147 6.067 -16.619 19.916 hybrid contribution 0.871 -0.252 -1.316 1.598 sum 10.018 5.815 -17.934 21.350 Atomic orbital electron populations 1.21860 0.92625 1.02988 1.03002 1.18511 0.96356 0.95270 0.90779 1.21858 1.01777 0.93926 1.02904 1.22627 0.96155 0.95432 0.93889 1.20776 1.02504 1.02338 0.96734 1.14695 0.83169 0.79414 0.80735 1.90847 1.24037 1.65749 1.59824 1.45840 1.28203 1.31498 1.29815 1.22137 0.95043 0.93385 0.85320 0.87989 1.22723 0.99944 0.95940 0.98543 1.22093 0.98260 0.98977 0.96628 1.22074 0.95291 0.98118 0.99569 1.22448 0.95759 0.96438 0.97665 0.90395 1.20624 0.89702 0.93178 0.92651 1.42330 1.34024 1.11390 1.51014 1.20043 1.10912 0.96096 1.19093 0.91859 1.25764 0.98403 0.97605 1.02528 1.70892 1.42116 1.09012 1.37055 0.83245 0.75985 0.74282 0.75437 1.21022 1.22258 1.22307 0.91163 0.91839 0.91791 0.88110 0.91950 0.91199 0.91861 0.76069 0.91299 0.91418 0.91698 0.91784 0.90834 0.91418 0.96373 0.96018 0.80000 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.15 37.16 0.34 -0.62 16 2 C 0.01 0.06 3.30 -93.40 -0.31 -0.24 16 3 C -0.15 -0.96 9.15 37.16 0.34 -0.62 16 4 C -0.08 -0.87 12.56 -37.12 -0.47 -1.34 16 5 C -0.22 -2.98 13.61 -38.84 -0.53 -3.50 16 6 C 0.63 9.66 7.65 -14.33 -0.11 9.55 16 7 O -0.53 -9.75 16.73 5.26 0.09 -9.66 16 8 N -0.70 -9.46 5.17 -54.29 -0.28 -9.74 16 9 C 0.15 2.07 2.69 -65.92 -0.18 1.90 16 10 H 0.10 1.63 7.47 -51.93 -0.39 1.25 16 11 C -0.13 -1.63 6.51 -25.07 -0.16 -1.79 16 12 C -0.12 -1.48 6.80 -25.61 -0.17 -1.65 16 13 C -0.11 -1.68 6.05 -25.61 -0.15 -1.84 16 14 C -0.10 -1.64 2.56 -88.94 -0.23 -1.86 16 15 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 16 C 0.17 3.42 5.57 -4.04 -0.02 3.40 16 17 N -0.74 -18.80 5.44 -59.91 -0.33 -19.13 16 18 C -0.33 -9.51 9.99 -15.06 -0.15 -9.66 16 19 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 21 N -0.94 -29.35 13.70 55.49 0.76 -28.59 16 22 Si 1.08 26.24 29.92 -169.99 -5.09 21.16 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 4.67 8.54 -40.82 -0.35 4.32 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 42 H 0.37 9.38 6.35 -40.82 -0.26 9.12 16 43 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -34.07 360.00 -8.53 -42.60 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.21 Total: 7.67 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.90 Total: -9.74 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.15 Total: -57.45 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.07 -8.53 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.058 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds