Wall clock time and date at job start Tue Mar 31 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46927 * 2 1 4 4 C 1.47203 * 109.47028 * 119.99796 * 2 1 3 5 5 C 2.64601 * 109.47300 * 119.99984 * 2 1 3 6 6 C 4.07801 * 109.47323 * 119.99852 * 2 1 3 7 7 O 1.21616 * 119.99733 * 184.45119 * 6 5 4 8 8 N 1.34775 * 120.00245 * 4.45882 * 6 5 4 9 9 C 1.46501 * 120.00050 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.81639 * 31.66428 * 9 8 6 11 11 C 1.54890 * 110.75623 * 268.32613 * 9 8 6 12 12 C 1.54267 * 104.19573 * 203.74213 * 11 9 8 13 13 C 1.53876 * 106.59937 * 23.61105 * 12 11 9 14 14 C 1.54271 * 106.59824 * 0.02562 * 13 12 11 15 15 H 1.08994 * 110.49186 * 95.20050 * 14 13 12 16 16 C 1.53003 * 110.48439 * 217.71487 * 14 13 12 17 17 N 1.46498 * 109.46778 * 293.54026 * 16 14 13 18 18 C 1.36936 * 119.99972 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99631 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00202 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00201 * 179.72570 * 20 18 17 23 23 H 1.48494 * 109.47228 * 180.27680 * 22 20 18 24 24 H 1.48500 * 109.47000 * 300.27564 * 22 20 18 25 25 H 1.48493 * 109.46907 * 60.27455 * 22 20 18 26 26 H 1.08999 * 109.47626 * 60.00092 * 1 2 3 27 27 H 1.09003 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47043 * 299.99834 * 1 2 3 29 29 H 1.08999 * 109.47043 * 240.00166 * 2 1 3 30 30 H 1.08992 * 109.46834 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46893 * 300.00357 * 3 2 1 32 32 H 1.09007 * 109.46854 * 60.00021 * 3 2 1 33 33 H 0.97003 * 119.99888 * 359.97438 * 8 6 5 34 34 H 1.09001 * 110.48626 * 85.06230 * 11 9 8 35 35 H 1.09004 * 110.48434 * 322.42548 * 11 9 8 36 36 H 1.08994 * 110.03056 * 264.32347 * 12 11 9 37 37 H 1.08999 * 110.03168 * 142.89310 * 12 11 9 38 38 H 1.09000 * 110.03333 * 240.71609 * 13 12 11 39 39 H 1.08996 * 110.03408 * 119.27934 * 13 12 11 40 40 H 1.08998 * 109.46943 * 173.54745 * 16 14 13 41 41 H 1.08994 * 109.47116 * 53.54356 * 16 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99717 * 359.71965 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4121 -1.2473 2.1604 6 6 2.8895 -1.9223 3.3297 7 8 3.9110 -1.5480 3.8734 8 7 2.2069 -2.9723 3.8276 9 6 2.6957 -3.6632 5.0235 10 1 3.2138 -2.9704 5.6864 11 6 3.6179 -4.8457 4.6359 12 6 3.5453 -5.7955 5.8493 13 6 2.2190 -5.4907 6.5675 14 6 1.5316 -4.3667 5.7650 15 1 0.8205 -4.7860 5.0533 16 6 0.8292 -3.3880 6.7082 17 7 -0.2841 -4.0670 7.3758 18 6 -1.0630 -3.3856 8.2726 19 1 -0.8567 -2.3475 8.4874 20 6 -2.1175 -4.0292 8.9056 21 7 -2.3685 -5.2945 8.6442 22 14 -3.1752 -3.1018 10.1347 23 1 -4.2217 -4.0087 10.6707 24 1 -2.3250 -2.6132 11.2499 25 1 -3.8195 -1.9462 9.4605 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.3920 -3.2707 3.3941 34 1 4.6399 -4.4985 4.4837 35 1 3.2454 -5.3422 3.7398 36 1 4.3843 -5.6095 6.5197 37 1 3.5582 -6.8323 5.5132 38 1 2.4143 -5.1567 7.5865 39 1 1.5882 -6.3795 6.5798 40 1 0.4481 -2.5421 6.1361 41 1 1.5380 -3.0315 7.4555 42 1 -0.4691 -4.9995 7.1832 43 1 -1.8191 -5.7762 8.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272264295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:53 Heat of formation + Delta-G solvation = -23.188961 kcal Electronic energy + Delta-G solvation = -21003.311017 eV Core-core repulsion = 17855.094310 eV Total energy + Delta-G solvation = -3148.216707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21212 -39.34108 -37.36073 -36.67605 -34.98209 -33.35535 -32.94292 -30.06067 -28.97195 -28.08844 -26.22098 -25.16307 -24.11703 -22.65192 -21.73822 -21.05827 -19.74064 -19.23680 -17.92271 -17.14421 -16.98194 -16.26369 -16.01513 -15.79814 -15.51812 -15.45848 -15.11792 -14.99607 -14.47941 -14.42578 -13.74321 -13.36634 -13.13348 -12.97353 -12.79673 -12.68628 -12.56798 -12.43161 -12.36373 -12.15971 -11.95476 -11.87762 -11.77150 -11.65567 -11.38503 -11.30697 -11.28858 -11.24923 -10.96030 -10.23286 -9.14693 -8.43249 -5.36929 0.41569 1.17289 1.56866 1.66501 1.83533 1.94889 2.38282 2.68249 3.08435 3.33014 3.36664 3.55448 3.76317 3.96946 4.02189 4.08224 4.13694 4.30505 4.34243 4.35943 4.40255 4.47718 4.54382 4.61662 4.75671 4.84535 4.91025 4.92001 4.92842 5.01495 5.06355 5.08003 5.16908 5.19235 5.30030 5.32389 5.39445 5.43156 5.54319 6.13223 6.28161 6.47883 6.93031 7.06519 7.96590 8.08035 9.09076 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.003849 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.133341 B = 7272.437876 C = 8892.340569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.005 3.995 3 C -0.147 4.147 4 C -0.041 4.041 5 C -0.276 4.276 6 C 0.634 3.366 7 O -0.569 6.569 8 N -0.695 5.695 9 C 0.150 3.850 10 H 0.081 0.919 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.111 4.111 14 C -0.092 4.092 15 H 0.086 0.914 16 C 0.167 3.833 17 N -0.750 5.750 18 C -0.341 4.341 19 H 0.060 0.940 20 C -0.099 4.099 21 N -0.971 5.971 22 Si 1.127 2.873 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.278 1.278 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.129 0.871 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.364 0.636 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 6.093 -20.024 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.204 4.204 4 C -0.044 4.044 5 C -0.279 4.279 6 C 0.422 3.578 7 O -0.450 6.450 8 N -0.344 5.344 9 C 0.045 3.955 10 H 0.099 0.901 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.111 4.111 15 H 0.105 0.895 16 C 0.041 3.959 17 N -0.395 5.395 18 C -0.472 4.472 19 H 0.078 0.922 20 C -0.291 4.291 21 N -0.619 5.619 22 Si 0.951 3.049 23 H -0.215 1.215 24 H -0.206 1.206 25 H -0.204 1.204 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.251 0.749 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.197 0.803 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.073 6.463 -18.532 21.622 hybrid contribution 0.892 -0.305 -0.811 1.243 sum 9.964 6.158 -19.343 22.613 Atomic orbital electron populations 1.21877 0.91722 1.03106 1.03640 1.18896 0.96983 0.95618 0.89822 1.21882 1.01549 0.93306 1.03672 1.23541 0.93914 0.93404 0.93523 1.20632 1.05005 1.04563 0.97688 1.14891 0.82618 0.79286 0.80968 1.90810 1.25904 1.66992 1.61323 1.45758 1.28341 1.31009 1.29282 1.22004 0.94514 0.93709 0.85298 0.90071 1.22665 0.99458 0.94785 0.99216 1.22044 0.96497 1.00130 0.96266 1.22028 0.96898 0.97387 0.98618 1.22293 0.96080 0.95760 0.96961 0.89536 1.20701 0.88426 0.93959 0.92844 1.42462 1.34804 1.11347 1.50908 1.20369 1.11241 0.96211 1.19387 0.92220 1.27197 0.99929 0.97726 1.04220 1.70995 1.42826 1.10061 1.37994 0.82642 0.74650 0.73626 0.73942 1.21470 1.20573 1.20421 0.88634 0.92011 0.93099 0.85361 0.92375 0.88516 0.93070 0.74873 0.91053 0.89752 0.91022 0.89614 0.93010 0.91664 0.97209 0.97118 0.80321 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.15 71.98 0.66 -0.89 16 2 C 0.00 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.58 9.15 71.98 0.66 -0.92 16 4 C -0.04 -0.87 12.56 31.13 0.39 -0.48 16 5 C -0.28 -7.44 13.61 30.02 0.41 -7.03 16 6 C 0.63 19.74 7.65 85.49 0.65 20.39 16 7 O -0.57 -21.77 16.73 -4.08 -0.07 -21.84 16 8 N -0.69 -18.65 5.17 -443.94 -2.30 -20.95 16 9 C 0.15 4.25 2.69 46.29 0.12 4.37 16 10 H 0.08 2.69 7.47 -2.39 -0.02 2.67 16 11 C -0.12 -2.82 6.51 31.67 0.21 -2.61 16 12 C -0.11 -2.51 6.80 31.32 0.21 -2.30 16 13 C -0.11 -3.30 6.05 31.32 0.19 -3.11 16 14 C -0.09 -2.89 2.56 -9.71 -0.02 -2.92 16 15 H 0.09 2.62 8.02 -2.39 -0.02 2.60 16 16 C 0.17 7.06 5.57 86.38 0.48 7.54 16 17 N -0.75 -38.76 5.44 -343.46 -1.87 -40.62 16 18 C -0.34 -19.83 9.99 84.03 0.84 -18.99 16 19 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 20 C -0.10 -5.84 5.50 84.86 0.47 -5.37 16 21 N -0.97 -60.88 13.70 21.65 0.30 -60.59 16 22 Si 1.13 52.66 29.92 68.60 2.05 54.71 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.41 9.37 8.54 -92.71 -0.79 8.58 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.75 7.77 -2.39 -0.02 1.73 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 42 H 0.36 19.02 6.35 -92.71 -0.59 18.43 16 43 H 0.25 15.23 6.77 -92.70 -0.63 14.60 16 Total: -1.00 -74.60 360.00 3.10 -71.50 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.24 Total: 30.09 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.22 Total: -12.30 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -3.87 Total: -122.16 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.07 Total: -21.84 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.05 Total: 54.71 kcal Total: -74.60 3.10 -71.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272264295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.311 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds