Wall clock time and date at job start Tue Mar 31 2020 00:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46803 * 2 1 4 4 C 1.52997 * 109.47175 * 240.00177 * 2 1 3 5 5 C 1.47196 * 109.47277 * 120.00098 * 2 1 3 6 6 C 2.64596 * 109.47119 * 120.00082 * 2 1 3 7 7 C 4.07796 * 109.47088 * 120.00211 * 2 1 3 8 8 O 1.21616 * 120.00027 * 253.31503 * 7 6 5 9 9 N 1.34779 * 120.00148 * 73.31804 * 7 6 5 10 10 C 1.46494 * 120.00531 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47008 * 325.00296 * 10 9 7 12 12 C 1.52996 * 109.47509 * 205.00222 * 10 9 7 13 13 N 1.46498 * 109.47059 * 54.99655 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53004 * 109.47171 * 84.99693 * 10 9 7 23 23 C 1.53005 * 117.49613 * 8.75247 * 22 10 9 24 24 C 1.52997 * 117.49957 * 300.09370 * 22 10 9 25 25 H 1.08997 * 109.46972 * 299.99999 * 1 2 3 26 26 H 1.09007 * 109.47116 * 60.00129 * 1 2 3 27 27 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46797 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47780 * 299.99730 * 3 2 1 30 30 H 1.09005 * 109.47118 * 60.00427 * 3 2 1 31 31 H 1.09003 * 109.47334 * 299.99899 * 4 2 1 32 32 H 1.09007 * 109.47348 * 59.99836 * 4 2 1 33 33 H 1.09000 * 109.47264 * 179.97438 * 4 2 1 34 34 H 0.97009 * 119.99558 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 294.99922 * 12 10 9 36 36 H 1.08994 * 109.46974 * 175.00070 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.54876 * 154.41877 * 22 10 9 40 40 H 1.09005 * 117.49448 * 359.97438 * 23 22 10 41 41 H 1.08994 * 117.49848 * 145.02087 * 23 22 10 42 42 H 1.08997 * 117.49655 * 214.97733 * 24 22 10 43 43 H 1.09004 * 117.50130 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2018 6 6 2.4120 -1.2473 2.1604 7 6 2.8893 -1.9225 3.3296 8 8 2.8634 -1.3620 4.4086 9 7 3.3674 -3.1791 3.2342 10 6 3.8562 -3.8696 4.4302 11 1 4.3356 -3.1506 5.0944 12 6 4.8692 -4.9411 4.0222 13 7 5.9346 -4.3278 3.2253 14 6 6.9634 -5.0967 2.7503 15 1 6.9870 -6.1560 2.9594 16 6 7.9759 -4.5146 2.0001 17 7 8.9644 -5.2536 1.5432 18 14 7.9354 -2.6822 1.6391 19 1 8.6507 -1.9498 2.7148 20 1 8.5980 -2.4196 0.3364 21 1 6.5252 -2.2205 1.5791 22 6 2.6808 -4.5285 5.1549 23 6 1.3271 -4.5382 4.4419 24 6 1.5526 -3.6181 5.6443 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 3.3877 -3.6262 2.3736 35 1 4.3687 -5.7079 3.4308 36 1 5.2986 -5.3941 4.9157 37 1 5.9135 -3.3763 3.0378 38 1 9.6718 -4.8469 1.0186 39 1 2.9323 -5.3930 5.7693 40 1 1.2739 -4.0749 3.4567 41 1 0.6878 -5.4089 4.5875 42 1 1.0617 -3.8840 6.5804 43 1 1.6480 -2.5498 5.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276589428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:32 Heat of formation + Delta-G solvation = 44.530091 kcal Electronic energy + Delta-G solvation = -21657.273907 eV Core-core repulsion = 18511.993719 eV Total energy + Delta-G solvation = -3145.280188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13084 -37.80064 -37.19473 -35.10342 -33.49198 -32.27931 -31.28043 -28.69709 -27.62564 -27.58489 -24.51679 -23.63754 -22.28042 -21.35400 -21.12464 -19.85081 -18.59255 -17.57802 -16.28539 -16.16859 -15.91783 -14.88319 -14.65409 -14.57901 -14.37050 -14.06810 -13.77283 -13.36204 -12.83981 -12.73765 -12.73620 -12.30394 -12.06888 -12.00483 -11.88879 -11.66959 -11.56445 -11.52669 -11.35846 -11.08301 -10.90172 -10.54446 -10.33409 -10.24845 -10.21448 -10.00685 -9.74810 -9.61549 -8.98352 -8.87352 -7.30349 -5.81459 -3.17862 1.59595 2.28166 3.14159 3.34327 3.39106 3.42974 3.56516 3.94215 4.11276 4.55321 4.60624 4.63089 4.69652 4.76814 5.07514 5.11607 5.19238 5.28178 5.31417 5.39407 5.44038 5.47656 5.53355 5.54933 5.58163 5.72410 5.75138 5.78530 5.80719 5.86504 5.95402 5.98218 6.04713 6.19599 6.33911 6.42999 6.54487 6.72763 7.20223 7.58079 7.93521 8.22750 8.37071 9.15450 9.87804 10.06757 11.36633 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.006088 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.749798 B = 4598.209225 C = 6500.123690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.218 4.218 7 C 0.632 3.368 8 O -0.526 6.526 9 N -0.699 5.699 10 C 0.164 3.836 11 H 0.095 0.905 12 C 0.153 3.847 13 N -0.756 5.756 14 C -0.247 4.247 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.932 5.932 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.409 0.591 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 8.534 -2.041 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.037 3.963 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.077 4.077 6 C -0.221 4.221 7 C 0.419 3.581 8 O -0.404 6.404 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.113 0.887 12 C 0.025 3.975 13 N -0.402 5.402 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.579 5.579 18 Si 0.711 3.289 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.180 4.180 23 C -0.215 4.215 24 C -0.224 4.224 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.245 0.755 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.088 8.693 -1.302 21.014 hybrid contribution 0.196 0.982 -0.687 1.214 sum -18.892 9.674 -1.989 21.318 Atomic orbital electron populations 1.21895 0.92296 1.02821 1.02725 1.17930 0.95914 0.94446 0.88003 1.21913 1.01986 0.93383 1.02697 1.21925 1.02126 1.00664 0.95342 1.22480 0.94429 0.96565 0.94181 1.20796 1.03782 1.01732 0.95742 1.14707 0.77366 0.81126 0.84915 1.90772 1.55795 1.66385 1.27482 1.45936 1.62293 1.14045 1.12691 1.20921 0.92716 0.94673 0.85722 0.88692 1.20903 0.87932 0.93080 0.95561 1.42712 1.26077 1.07640 1.63783 1.19039 0.98492 0.93561 1.26544 0.89029 1.24641 0.96903 0.97136 1.00081 1.69693 1.12917 1.34536 1.40775 0.86606 0.77365 0.87087 0.77801 1.20998 1.21638 1.20455 1.22673 0.89805 1.02025 1.03499 1.22907 0.99017 1.02174 0.97367 1.23347 1.01981 0.99350 0.97710 0.91964 0.91171 0.91921 0.91828 0.91167 0.91918 0.91775 0.91179 0.91696 0.75546 0.94598 0.93608 0.80446 0.92994 0.86771 0.89138 0.89231 0.89465 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.43 37.16 0.31 -0.76 16 2 C 0.04 0.36 0.95 -157.30 -0.15 0.21 16 3 C -0.14 -1.23 8.43 37.16 0.31 -0.91 16 4 C -0.14 -1.25 8.43 37.16 0.31 -0.94 16 5 C -0.07 -0.99 11.77 -37.12 -0.44 -1.42 16 6 C -0.22 -3.39 13.61 -38.84 -0.53 -3.92 16 7 C 0.63 10.74 6.49 -14.33 -0.09 10.65 16 8 O -0.53 -10.11 14.11 5.26 0.07 -10.03 16 9 N -0.70 -11.11 3.05 -56.25 -0.17 -11.28 16 10 C 0.16 2.64 2.59 -67.93 -0.18 2.46 16 11 H 0.10 1.69 7.58 -51.93 -0.39 1.29 16 12 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 13 N -0.76 -17.61 5.24 -59.91 -0.31 -17.93 16 14 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 18 Si 0.88 22.38 27.74 -169.99 -4.71 17.66 16 19 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 22 C -0.16 -2.18 5.71 -90.62 -0.52 -2.70 16 23 C -0.18 -2.23 9.74 -26.69 -0.26 -2.49 16 24 C -0.19 -2.53 9.82 -26.69 -0.26 -2.79 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.41 6.21 8.57 -40.82 -0.35 5.86 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.36 8.51 5.20 -40.82 -0.21 8.30 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.11 1.40 8.11 -51.93 -0.42 0.98 16 40 H 0.09 1.18 6.67 -51.93 -0.35 0.84 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.11 1.82 5.01 -51.93 -0.26 1.56 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -32.46 355.92 -7.82 -40.28 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.07 Total: 10.94 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.76 Total: -6.71 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.29 Total: -57.51 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.46 -7.82 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276589428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.812 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds