Wall clock time and date at job start Tue Mar 31 2020 00:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46803 * 2 1 4 4 C 1.52997 * 109.47175 * 240.00177 * 2 1 3 5 5 C 1.47196 * 109.47277 * 120.00098 * 2 1 3 6 6 C 2.64596 * 109.47119 * 120.00082 * 2 1 3 7 7 C 4.07796 * 109.47088 * 120.00211 * 2 1 3 8 8 O 1.21616 * 120.00027 * 253.31503 * 7 6 5 9 9 N 1.34779 * 120.00148 * 73.31804 * 7 6 5 10 10 C 1.46494 * 120.00531 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47008 * 325.00296 * 10 9 7 12 12 C 1.52996 * 109.47509 * 205.00222 * 10 9 7 13 13 N 1.46498 * 109.47059 * 54.99655 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53004 * 109.47171 * 84.99693 * 10 9 7 23 23 C 1.53005 * 117.49613 * 8.75247 * 22 10 9 24 24 C 1.52997 * 117.49957 * 300.09370 * 22 10 9 25 25 H 1.08997 * 109.46972 * 299.99999 * 1 2 3 26 26 H 1.09007 * 109.47116 * 60.00129 * 1 2 3 27 27 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46797 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47780 * 299.99730 * 3 2 1 30 30 H 1.09005 * 109.47118 * 60.00427 * 3 2 1 31 31 H 1.09003 * 109.47334 * 299.99899 * 4 2 1 32 32 H 1.09007 * 109.47348 * 59.99836 * 4 2 1 33 33 H 1.09000 * 109.47264 * 179.97438 * 4 2 1 34 34 H 0.97009 * 119.99558 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 294.99922 * 12 10 9 36 36 H 1.08994 * 109.46974 * 175.00070 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.54876 * 154.41877 * 22 10 9 40 40 H 1.09005 * 117.49448 * 359.97438 * 23 22 10 41 41 H 1.08994 * 117.49848 * 145.02087 * 23 22 10 42 42 H 1.08997 * 117.49655 * 214.97733 * 24 22 10 43 43 H 1.09004 * 117.50130 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2018 6 6 2.4120 -1.2473 2.1604 7 6 2.8893 -1.9225 3.3296 8 8 2.8634 -1.3620 4.4086 9 7 3.3674 -3.1791 3.2342 10 6 3.8562 -3.8696 4.4302 11 1 4.3356 -3.1506 5.0944 12 6 4.8692 -4.9411 4.0222 13 7 5.9346 -4.3278 3.2253 14 6 6.9634 -5.0967 2.7503 15 1 6.9870 -6.1560 2.9594 16 6 7.9759 -4.5146 2.0001 17 7 8.9644 -5.2536 1.5432 18 14 7.9354 -2.6822 1.6391 19 1 8.6507 -1.9498 2.7148 20 1 8.5980 -2.4196 0.3364 21 1 6.5252 -2.2205 1.5791 22 6 2.6808 -4.5285 5.1549 23 6 1.3271 -4.5382 4.4419 24 6 1.5526 -3.6181 5.6443 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 3.3877 -3.6262 2.3736 35 1 4.3687 -5.7079 3.4308 36 1 5.2986 -5.3941 4.9157 37 1 5.9135 -3.3763 3.0378 38 1 9.6718 -4.8469 1.0186 39 1 2.9323 -5.3930 5.7693 40 1 1.2739 -4.0749 3.4567 41 1 0.6878 -5.4089 4.5875 42 1 1.0617 -3.8840 6.5804 43 1 1.6480 -2.5498 5.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276589428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:31 Heat of formation + Delta-G solvation = 24.920299 kcal Electronic energy + Delta-G solvation = -21658.124252 eV Core-core repulsion = 18511.993719 eV Total energy + Delta-G solvation = -3146.130533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42115 -38.68810 -38.36506 -36.73596 -34.99811 -33.66885 -33.00536 -30.29327 -28.25239 -28.22814 -26.13062 -25.00493 -23.44703 -22.93868 -22.09464 -21.09354 -20.11264 -19.28749 -17.54678 -17.42742 -16.90321 -16.59375 -16.04329 -15.55645 -15.33410 -15.22938 -15.18967 -14.86376 -14.72382 -13.93122 -13.52745 -13.39821 -13.34297 -13.07252 -12.89049 -12.80913 -12.72224 -12.66177 -12.41533 -12.32943 -12.24463 -12.15876 -11.87003 -11.67450 -11.33461 -11.29563 -11.17764 -11.07284 -10.87063 -10.19030 -9.35803 -8.06665 -5.39858 0.40782 1.16322 1.31016 1.34202 1.39592 1.96048 2.36922 2.41937 2.87782 3.04132 3.26047 3.42422 3.81153 3.90469 3.92144 3.93468 4.00393 4.04020 4.22507 4.34315 4.41070 4.54413 4.69694 4.71250 4.78715 4.79681 4.82191 4.91913 4.92372 5.01383 5.02638 5.05040 5.15445 5.21392 5.31088 5.33137 5.34068 5.38746 5.72936 6.11219 6.16977 6.29641 6.94397 7.02551 7.77709 7.95407 9.14624 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.006088 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.749798 B = 4598.209225 C = 6500.123690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.042 4.042 6 C -0.273 4.273 7 C 0.633 3.367 8 O -0.556 6.556 9 N -0.695 5.695 10 C 0.173 3.827 11 H 0.077 0.923 12 C 0.154 3.846 13 N -0.759 5.759 14 C -0.230 4.230 15 H 0.067 0.933 16 C -0.054 4.054 17 N -0.978 5.978 18 Si 0.944 3.056 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.262 1.262 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.189 4.189 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.412 0.588 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.559 9.568 -2.916 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.044 4.044 6 C -0.275 4.275 7 C 0.421 3.579 8 O -0.437 6.437 9 N -0.345 5.345 10 C 0.068 3.932 11 H 0.095 0.905 12 C 0.027 3.973 13 N -0.405 5.405 14 C -0.361 4.361 15 H 0.085 0.915 16 C -0.246 4.246 17 N -0.629 5.629 18 Si 0.772 3.228 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.184 4.184 23 C -0.202 4.202 24 C -0.226 4.226 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.249 0.751 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.443 9.719 -2.162 23.642 hybrid contribution 0.846 0.621 -0.416 1.129 sum -20.597 10.340 -2.578 23.191 Atomic orbital electron populations 1.21907 0.90362 1.03188 1.03948 1.18327 0.97392 0.94731 0.86603 1.21947 1.01242 0.92730 1.04023 1.21953 1.01217 1.00938 0.95875 1.23449 0.92139 0.94809 0.94037 1.20762 1.06200 1.03800 0.96776 1.14843 0.76885 0.81111 0.85030 1.90748 1.57173 1.67036 1.28715 1.45889 1.61948 1.13903 1.12757 1.20733 0.93219 0.93570 0.85638 0.90540 1.21047 0.87240 0.93860 0.95119 1.42726 1.26194 1.07393 1.64150 1.19051 0.99112 0.92879 1.25092 0.91511 1.25328 0.96966 1.01368 1.00914 1.69844 1.14054 1.36484 1.42473 0.85590 0.78065 0.81906 0.77243 1.21204 1.21676 1.18685 1.22626 0.89162 1.02532 1.04048 1.22978 0.98202 1.02429 0.96632 1.23292 1.02138 0.98065 0.99123 0.92344 0.88394 0.92029 0.93064 0.88220 0.92289 0.91930 0.88316 0.93160 0.75147 0.93473 0.93022 0.80461 0.93254 0.84940 0.89851 0.86904 0.87516 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.43 71.98 0.61 -1.09 16 2 C 0.03 0.50 0.95 -53.99 -0.05 0.45 16 3 C -0.14 -2.10 8.43 71.98 0.61 -1.49 16 4 C -0.14 -2.12 8.43 71.98 0.61 -1.51 16 5 C -0.04 -1.07 11.77 31.12 0.37 -0.71 16 6 C -0.27 -8.47 13.61 30.02 0.41 -8.06 16 7 C 0.63 21.68 6.49 85.49 0.55 22.23 16 8 O -0.56 -21.81 14.11 -4.08 -0.06 -21.86 16 9 N -0.69 -21.85 3.05 -450.12 -1.37 -23.22 16 10 C 0.17 5.45 2.59 44.99 0.12 5.57 16 11 H 0.08 2.72 7.58 -2.39 -0.02 2.71 16 12 C 0.15 5.53 5.80 86.38 0.50 6.03 16 13 N -0.76 -34.96 5.24 -343.46 -1.80 -36.75 16 14 C -0.23 -12.92 10.47 84.03 0.88 -12.04 16 15 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 16 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 17 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 18 Si 0.94 46.51 27.74 68.60 1.90 48.41 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 22 C -0.16 -4.20 5.71 -10.79 -0.06 -4.26 16 23 C -0.17 -3.82 9.74 30.62 0.30 -3.53 16 24 C -0.19 -4.86 9.82 30.62 0.30 -4.56 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.41 12.29 8.57 -92.70 -0.79 11.50 16 35 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.36 16.72 5.20 -92.71 -0.48 16.24 16 38 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 39 H 0.13 2.92 8.11 -2.39 -0.02 2.90 16 40 H 0.08 2.06 6.67 -2.38 -0.02 2.05 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 2.85 5.01 -2.38 -0.01 2.84 16 Total: -1.00 -70.96 355.92 4.25 -66.71 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.33 Total: 34.23 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.60 Total: -5.66 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -2.87 Total: -121.82 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -70.96 4.25 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276589428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.630 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds