Wall clock time and date at job start Tue Mar 31 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47075 * 2 1 4 4 C 1.52998 * 109.47231 * 240.00129 * 2 1 3 5 5 C 1.47202 * 109.47441 * 120.00138 * 2 1 3 6 6 C 2.64603 * 109.47334 * 119.99886 * 2 1 3 7 7 C 4.07800 * 109.47229 * 120.00059 * 2 1 3 8 8 O 1.21613 * 120.00277 * 282.29223 * 7 6 5 9 9 N 1.34774 * 119.99831 * 102.29292 * 7 6 5 10 10 C 1.46505 * 120.00190 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46653 * 34.99978 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00108 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.36938 * 119.99769 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00369 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99534 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99980 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00163 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47300 * 90.00149 * 18 16 14 20 20 H 1.48498 * 109.47217 * 210.00529 * 18 16 14 21 21 H 1.48505 * 109.47203 * 330.00573 * 18 16 14 22 22 C 1.53003 * 109.46936 * 275.00149 * 10 9 7 23 23 C 1.53001 * 117.51964 * 356.28241 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 1.09000 * 109.46926 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.46890 * 59.99650 * 1 2 3 27 27 H 1.08998 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47043 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47072 * 299.99990 * 3 2 1 30 30 H 1.09000 * 109.47194 * 60.00225 * 3 2 1 31 31 H 1.08999 * 109.47225 * 300.00030 * 4 2 1 32 32 H 1.09005 * 109.46964 * 60.00024 * 4 2 1 33 33 H 1.09006 * 109.47397 * 179.97438 * 4 2 1 34 34 H 0.97005 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 36 36 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 37 37 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 38 38 H 0.97000 * 119.99943 * 179.97438 * 17 16 14 39 39 H 1.09002 * 115.54973 * 210.58024 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0208 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1605 7 6 2.8894 -1.9224 3.3296 8 8 2.4240 -1.6525 4.4203 9 7 3.8545 -2.8569 3.2213 10 6 4.3432 -3.5473 4.4175 11 1 3.5194 -3.6897 5.1169 12 6 4.9173 -4.9091 4.0216 13 7 3.9069 -5.6684 3.2809 14 6 4.1957 -6.9258 2.8217 15 1 5.1682 -7.3578 3.0059 16 6 3.2384 -7.6450 2.1193 17 7 3.5157 -8.8537 1.6784 18 14 1.5561 -6.8980 1.8013 19 1 1.5799 -6.1533 0.5168 20 1 0.5404 -7.9788 1.7281 21 1 1.2105 -5.9680 2.9063 22 6 5.4359 -2.7065 5.0809 23 6 5.8645 -1.4191 4.3738 24 6 5.0308 -1.3472 5.6547 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1301 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 4.2255 -3.0725 2.3513 35 1 5.7960 -4.7642 3.3930 36 1 5.1995 -5.4593 4.9193 37 1 3.0333 -5.2805 3.1157 38 1 2.8467 -9.3564 1.1879 39 1 6.2040 -3.2684 5.6123 40 1 6.9145 -1.1342 4.4400 41 1 5.3682 -1.1712 3.4356 42 1 3.9859 -1.0519 5.5593 43 1 5.5325 -1.0150 6.5637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276589435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:34 Heat of formation + Delta-G solvation = 44.165173 kcal Electronic energy + Delta-G solvation = -21650.432628 eV Core-core repulsion = 18505.136616 eV Total energy + Delta-G solvation = -3145.296012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12330 -37.80142 -37.19282 -35.11383 -33.49926 -32.28486 -31.28108 -28.70144 -27.62592 -27.58594 -24.51769 -23.62715 -22.26429 -21.35535 -21.12267 -19.88726 -18.59381 -17.57321 -16.30523 -16.13379 -15.90793 -14.89923 -14.65154 -14.57997 -14.36338 -14.07625 -13.77335 -13.36903 -12.82507 -12.73882 -12.73566 -12.33682 -12.06934 -12.00506 -11.88711 -11.65470 -11.55956 -11.52274 -11.34811 -11.08972 -10.90949 -10.54772 -10.34155 -10.24282 -10.21211 -10.00282 -9.75875 -9.61882 -8.98332 -8.88310 -7.30380 -5.81492 -3.17866 1.59395 2.27753 3.13328 3.33892 3.39993 3.42594 3.56305 3.93733 4.12265 4.55317 4.60530 4.62984 4.69214 4.76199 5.07534 5.12136 5.18852 5.28174 5.31373 5.38823 5.44047 5.47765 5.53309 5.54946 5.58231 5.72330 5.75161 5.78578 5.80887 5.86075 5.95468 5.98054 6.04438 6.19685 6.33923 6.43512 6.54379 6.72639 7.19693 7.58057 7.93453 8.22888 8.37119 9.15416 9.87779 10.06756 11.36619 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.006098 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.740819 B = 4590.603153 C = 6508.494567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.218 4.218 7 C 0.632 3.368 8 O -0.526 6.526 9 N -0.700 5.700 10 C 0.164 3.836 11 H 0.095 0.905 12 C 0.153 3.847 13 N -0.756 5.756 14 C -0.247 4.247 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.932 5.932 18 Si 0.879 3.121 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.161 4.161 23 C -0.177 4.177 24 C -0.186 4.186 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 21.000 -2.466 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.076 4.076 6 C -0.221 4.221 7 C 0.418 3.582 8 O -0.404 6.404 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.113 0.887 12 C 0.025 3.975 13 N -0.402 5.402 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.579 5.579 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.181 4.181 23 C -0.214 4.214 24 C -0.222 4.222 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.245 0.755 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.608 20.929 -1.712 21.008 hybrid contribution -1.007 0.189 -0.658 1.218 sum -1.616 21.118 -2.370 21.312 Atomic orbital electron populations 1.21913 0.92319 1.03052 1.02709 1.17935 0.96028 0.94340 0.88000 1.21894 1.01726 0.93390 1.02730 1.21926 1.01871 1.00916 0.95349 1.22485 0.95586 0.95312 0.94236 1.20796 1.03528 1.02090 0.95682 1.14706 0.79296 0.79091 0.85063 1.90769 1.57984 1.64971 1.26673 1.45948 1.38398 1.38737 1.11962 1.20924 0.95848 0.91154 0.86087 0.88711 1.20914 0.92462 0.87976 0.96132 1.42714 1.13001 1.17188 1.67305 1.19040 1.00363 0.90041 1.28176 0.89018 1.24641 0.97693 0.96125 1.00288 1.69695 1.34576 1.11109 1.42541 0.86626 0.85774 0.78500 0.78163 1.21043 1.21551 1.20341 1.22688 1.01240 0.90107 1.04040 1.22891 0.99943 1.01543 0.97033 1.23315 1.02355 0.99977 0.96595 0.91912 0.91158 0.91806 0.91931 0.91175 0.91957 0.91669 0.91182 0.91792 0.75548 0.94553 0.93637 0.80449 0.92992 0.86779 0.89242 0.89173 0.86728 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.43 37.16 0.31 -0.92 16 2 C 0.04 0.35 0.95 -157.29 -0.15 0.21 16 3 C -0.14 -1.07 8.43 37.16 0.31 -0.76 16 4 C -0.14 -1.24 8.43 37.16 0.31 -0.93 16 5 C -0.07 -0.97 11.77 -37.12 -0.44 -1.41 16 6 C -0.22 -3.37 13.61 -38.84 -0.53 -3.90 16 7 C 0.63 10.68 6.34 -14.34 -0.09 10.59 16 8 O -0.53 -10.09 14.06 5.27 0.07 -10.02 16 9 N -0.70 -11.06 3.17 -56.25 -0.18 -11.24 16 10 C 0.16 2.64 2.57 -67.93 -0.17 2.47 16 11 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 12 C 0.15 2.82 5.78 -4.04 -0.02 2.80 16 13 N -0.76 -17.63 5.24 -59.91 -0.31 -17.94 16 14 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 18 Si 0.88 22.36 27.73 -169.99 -4.71 17.65 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 22 C -0.16 -2.19 5.73 -90.61 -0.52 -2.71 16 23 C -0.18 -2.23 9.68 -26.73 -0.26 -2.49 16 24 C -0.19 -2.50 9.85 -26.73 -0.26 -2.77 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 6.13 8.57 -40.82 -0.35 5.78 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.36 8.53 5.20 -40.82 -0.21 8.32 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.11 1.40 8.08 -51.93 -0.42 0.98 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.19 6.41 -51.93 -0.33 0.86 16 42 H 0.11 1.82 5.25 -51.93 -0.27 1.54 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -32.51 355.74 -7.82 -40.33 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.07 Total: 10.88 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.76 Total: -6.71 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.49 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.51 -7.82 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276589435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.494 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds