Wall clock time and date at job start Tue Mar 31 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47075 * 2 1 4 4 C 1.52998 * 109.47231 * 240.00129 * 2 1 3 5 5 C 1.47202 * 109.47441 * 120.00138 * 2 1 3 6 6 C 2.64603 * 109.47334 * 119.99886 * 2 1 3 7 7 C 4.07800 * 109.47229 * 120.00059 * 2 1 3 8 8 O 1.21613 * 120.00277 * 282.29223 * 7 6 5 9 9 N 1.34774 * 119.99831 * 102.29292 * 7 6 5 10 10 C 1.46505 * 120.00190 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46653 * 34.99978 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00108 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.36938 * 119.99769 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00369 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99534 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99980 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00163 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47300 * 90.00149 * 18 16 14 20 20 H 1.48498 * 109.47217 * 210.00529 * 18 16 14 21 21 H 1.48505 * 109.47203 * 330.00573 * 18 16 14 22 22 C 1.53003 * 109.46936 * 275.00149 * 10 9 7 23 23 C 1.53001 * 117.51964 * 356.28241 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 1.09000 * 109.46926 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.46890 * 59.99650 * 1 2 3 27 27 H 1.08998 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47043 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47072 * 299.99990 * 3 2 1 30 30 H 1.09000 * 109.47194 * 60.00225 * 3 2 1 31 31 H 1.08999 * 109.47225 * 300.00030 * 4 2 1 32 32 H 1.09005 * 109.46964 * 60.00024 * 4 2 1 33 33 H 1.09006 * 109.47397 * 179.97438 * 4 2 1 34 34 H 0.97005 * 120.00049 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 36 36 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 37 37 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 38 38 H 0.97000 * 119.99943 * 179.97438 * 17 16 14 39 39 H 1.09002 * 115.54973 * 210.58024 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0208 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1605 7 6 2.8894 -1.9224 3.3296 8 8 2.4240 -1.6525 4.4203 9 7 3.8545 -2.8569 3.2213 10 6 4.3432 -3.5473 4.4175 11 1 3.5194 -3.6897 5.1169 12 6 4.9173 -4.9091 4.0216 13 7 3.9069 -5.6684 3.2809 14 6 4.1957 -6.9258 2.8217 15 1 5.1682 -7.3578 3.0059 16 6 3.2384 -7.6450 2.1193 17 7 3.5157 -8.8537 1.6784 18 14 1.5561 -6.8980 1.8013 19 1 1.5799 -6.1533 0.5168 20 1 0.5404 -7.9788 1.7281 21 1 1.2105 -5.9680 2.9063 22 6 5.4359 -2.7065 5.0809 23 6 5.8645 -1.4191 4.3738 24 6 5.0308 -1.3472 5.6547 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1301 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1301 -0.7208 -1.2495 34 1 4.2255 -3.0725 2.3513 35 1 5.7960 -4.7642 3.3930 36 1 5.1995 -5.4593 4.9193 37 1 3.0333 -5.2805 3.1157 38 1 2.8467 -9.3564 1.1879 39 1 6.2040 -3.2684 5.6123 40 1 6.9145 -1.1342 4.4400 41 1 5.3682 -1.1712 3.4356 42 1 3.9859 -1.0519 5.5593 43 1 5.5325 -1.0150 6.5637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276589435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:34 Heat of formation + Delta-G solvation = 24.456972 kcal Electronic energy + Delta-G solvation = -21651.287240 eV Core-core repulsion = 18505.136616 eV Total energy + Delta-G solvation = -3146.150624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41268 -38.68626 -38.36322 -36.74532 -35.00738 -33.67112 -33.00625 -30.29889 -28.25311 -28.22713 -26.12953 -25.00058 -23.41745 -22.94965 -22.09171 -21.12894 -20.11697 -19.28261 -17.56652 -17.38302 -16.90132 -16.59949 -16.05186 -15.54195 -15.33754 -15.22623 -15.19807 -14.86453 -14.72803 -13.96463 -13.52930 -13.39655 -13.34482 -13.03521 -12.88364 -12.79605 -12.71950 -12.66116 -12.41809 -12.33289 -12.25368 -12.19273 -11.87625 -11.66644 -11.33812 -11.29157 -11.17587 -11.07102 -10.87604 -10.20016 -9.35945 -8.06833 -5.39979 0.41008 1.16410 1.30955 1.33517 1.39572 1.95680 2.37060 2.41706 2.87878 3.04927 3.25235 3.41894 3.80387 3.90497 3.92184 3.93473 4.00424 4.04250 4.22184 4.33928 4.41527 4.53946 4.69762 4.71262 4.78484 4.79742 4.81772 4.91973 4.92413 5.01257 5.02514 5.04672 5.15513 5.21607 5.31086 5.33238 5.34335 5.38391 5.72793 6.11221 6.16911 6.30174 6.94929 7.02355 7.77546 7.95227 9.14486 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.006098 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.740819 B = 4590.603153 C = 6508.494567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 C -0.137 4.137 4 C -0.143 4.143 5 C -0.042 4.042 6 C -0.272 4.272 7 C 0.633 3.367 8 O -0.556 6.556 9 N -0.695 5.695 10 C 0.173 3.827 11 H 0.075 0.925 12 C 0.153 3.847 13 N -0.759 5.759 14 C -0.231 4.231 15 H 0.067 0.933 16 C -0.053 4.053 17 N -0.978 5.978 18 Si 0.942 3.058 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.270 1.270 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.188 4.188 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 23.481 -3.412 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.044 4.044 6 C -0.275 4.275 7 C 0.421 3.579 8 O -0.437 6.437 9 N -0.346 5.346 10 C 0.069 3.931 11 H 0.093 0.907 12 C 0.027 3.973 13 N -0.405 5.405 14 C -0.361 4.361 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.628 5.628 18 Si 0.771 3.229 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.196 1.196 22 C -0.184 4.184 23 C -0.202 4.202 24 C -0.224 4.224 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.195 0.805 38 H 0.068 0.932 39 H 0.151 0.849 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.648 23.449 -2.646 23.607 hybrid contribution -0.926 -0.534 -0.370 1.132 sum -1.575 22.915 -3.016 23.166 Atomic orbital electron populations 1.21948 0.91341 1.02661 1.04019 1.18328 0.96786 0.95309 0.86632 1.21906 1.01717 0.91857 1.03930 1.21952 1.01871 1.00300 0.95849 1.23443 0.93388 0.93487 0.94094 1.20744 1.05876 1.04176 0.96690 1.14844 0.78951 0.78921 0.85179 1.90746 1.59017 1.66009 1.27930 1.45897 1.38216 1.38411 1.12028 1.20729 0.95979 0.90518 0.85905 0.90701 1.21060 0.91711 0.88679 0.95836 1.42732 1.14043 1.16107 1.67595 1.19054 0.99089 0.91337 1.26657 0.91470 1.25325 1.01433 0.96663 1.01120 1.69846 1.35860 1.12797 1.44333 0.85608 0.81223 0.77614 0.78501 1.19952 1.21984 1.19565 1.22637 1.00896 0.90223 1.04631 1.22958 1.00978 1.00096 0.96209 1.23264 1.01414 0.99712 0.98044 0.92303 0.88224 0.93058 0.92012 0.88408 0.92374 0.93150 0.88353 0.91879 0.75090 0.93335 0.93088 0.80483 0.93248 0.84919 0.86877 0.90008 0.89243 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.43 71.98 0.61 -1.51 16 2 C 0.03 0.50 0.95 -53.99 -0.05 0.45 16 3 C -0.14 -1.70 8.43 71.98 0.61 -1.09 16 4 C -0.14 -2.10 8.43 71.98 0.61 -1.50 16 5 C -0.04 -1.06 11.77 31.13 0.37 -0.69 16 6 C -0.27 -8.40 13.61 30.01 0.41 -7.99 16 7 C 0.63 21.62 6.34 85.49 0.54 22.16 16 8 O -0.56 -21.85 14.06 -4.07 -0.06 -21.91 16 9 N -0.70 -21.79 3.17 -450.11 -1.43 -23.22 16 10 C 0.17 5.48 2.57 44.99 0.12 5.59 16 11 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 12 C 0.15 5.53 5.78 86.38 0.50 6.03 16 13 N -0.76 -35.05 5.24 -343.44 -1.80 -36.85 16 14 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 15 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 16 C -0.05 -3.13 5.50 84.86 0.47 -2.66 16 17 N -0.98 -62.12 13.97 21.65 0.30 -61.82 16 18 Si 0.94 46.51 27.73 68.60 1.90 48.41 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.27 -12.84 6.52 99.48 0.65 -12.19 16 22 C -0.16 -4.21 5.73 -10.79 -0.06 -4.27 16 23 C -0.17 -3.85 9.68 30.59 0.30 -3.55 16 24 C -0.19 -4.81 9.85 30.60 0.30 -4.51 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.41 12.18 8.57 -92.70 -0.79 11.39 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.36 16.79 5.20 -92.71 -0.48 16.31 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.13 2.92 8.08 -2.39 -0.02 2.90 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 2.06 6.41 -2.39 -0.02 2.04 16 42 H 0.09 2.84 5.25 -2.39 -0.01 2.83 16 43 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -71.01 355.74 4.18 -66.83 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.33 Total: 34.16 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.58 Total: -5.61 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -2.92 Total: -121.89 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -71.01 4.18 -66.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276589435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.289 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds