Wall clock time and date at job start Tue Mar 31 2020 00:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.65427 * 0.02802 * 8 6 5 10 10 C 1.54318 * 107.27306 * 181.01791 * 9 8 6 11 11 H 1.09007 * 110.71990 * 140.55445 * 10 9 8 12 12 N 1.46501 * 110.72122 * 263.82779 * 10 9 8 13 13 C 1.36929 * 119.99983 * 273.54668 * 12 10 9 14 14 H 1.08004 * 120.00566 * 359.97438 * 13 12 10 15 15 C 1.38818 * 119.99965 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99810 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00021 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46980 * 60.00285 * 17 15 13 19 19 H 1.48500 * 109.46794 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47057 * 299.99823 * 17 15 13 21 21 C 1.55155 * 102.94249 * 22.19672 * 10 9 8 22 22 C 1.53000 * 111.00748 * 82.56806 * 21 10 9 23 23 C 1.53000 * 111.00187 * 206.42189 * 21 10 9 24 24 C 1.47425 * 125.64484 * 179.71725 * 8 6 5 25 25 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 29 29 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 30 30 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 31 31 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 32 32 H 1.09001 * 109.87968 * 300.44420 * 9 8 6 33 33 H 1.09004 * 109.87943 * 61.44520 * 9 8 6 34 34 H 0.97000 * 119.99534 * 93.55103 * 12 10 9 35 35 H 0.96998 * 119.99910 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46814 * 60.00517 * 22 21 10 37 37 H 1.09001 * 109.46749 * 180.02562 * 22 21 10 38 38 H 1.08999 * 109.47152 * 300.00043 * 22 21 10 39 39 H 1.09006 * 109.47359 * 59.99943 * 23 21 10 40 40 H 1.09008 * 109.46969 * 179.97438 * 23 21 10 41 41 H 1.09002 * 109.47356 * 299.99516 * 23 21 10 42 42 H 1.09005 * 110.36776 * 274.75035 * 24 8 6 43 43 H 1.08998 * 110.36838 * 37.06695 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.5735 1.3566 -1.5946 10 6 8.9240 1.8603 -2.1459 11 1 9.6336 2.0263 -1.3353 12 7 9.4671 0.9179 -3.1274 13 6 10.2300 -0.1402 -2.7111 14 1 10.4318 -0.2800 -1.6594 15 6 10.7451 -1.0328 -3.6412 16 7 10.4997 -0.8623 -4.9230 17 14 11.7854 -2.4768 -3.0733 18 1 10.9874 -3.3323 -2.1588 19 1 12.2102 -3.2744 -4.2517 20 1 12.9849 -1.9718 -2.3583 21 6 8.5432 3.2021 -2.8254 22 6 8.4735 4.3357 -1.8002 23 6 9.5211 3.5434 -3.9515 24 6 7.1378 2.8727 -3.3936 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 2.7923 0.5859 -2.0681 29 1 2.7917 1.9442 -0.9178 30 1 5.0484 1.2819 -0.1332 31 1 5.0497 -0.0767 -1.2833 32 1 7.4805 1.6222 -0.5416 33 1 7.5028 0.2751 -1.7115 34 1 9.2863 1.0437 -4.0720 35 1 10.8599 -1.4858 -5.5729 36 1 9.4449 4.4509 -1.3194 37 1 8.2044 5.2645 -2.3033 38 1 7.7213 4.0993 -1.0477 39 1 9.5008 2.7534 -4.7023 40 1 9.2308 4.4883 -4.4110 41 1 10.5282 3.6316 -3.5439 42 1 7.2242 2.3365 -4.3386 43 1 6.5591 3.7868 -3.5268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278634283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:51 Heat of formation + Delta-G solvation = 14.532722 kcal Electronic energy + Delta-G solvation = -21894.543809 eV Core-core repulsion = 18747.962837 eV Total energy + Delta-G solvation = -3146.580972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00868 -38.07193 -35.59931 -33.94051 -33.21774 -32.25144 -30.78231 -28.37155 -27.94579 -26.71105 -25.79349 -23.85763 -22.27985 -21.42331 -19.02917 -18.69446 -18.06812 -17.25525 -16.49363 -16.12232 -15.46860 -14.96809 -14.70775 -14.15144 -14.01908 -13.87624 -13.67561 -13.05403 -12.87347 -12.66395 -12.48073 -12.32341 -12.01404 -11.83009 -11.63089 -11.56680 -11.47702 -11.02512 -11.00139 -10.91367 -10.58275 -10.45535 -10.33423 -10.29091 -10.20051 -9.86028 -9.69500 -9.53236 -9.01519 -8.20853 -7.08921 -5.86128 -3.16293 2.67900 2.72518 2.94170 3.37256 3.37950 3.42944 3.44224 4.24297 4.49720 4.64255 4.92675 4.95345 5.06160 5.09182 5.23334 5.38972 5.42527 5.45086 5.51991 5.60651 5.63258 5.69518 5.74543 5.88403 5.91474 5.97287 6.07224 6.11594 6.20010 6.21255 6.23063 6.27842 6.35296 6.39458 6.57131 6.67374 6.76930 6.90654 7.50136 7.60606 7.92967 8.31662 8.48225 9.43533 9.98525 10.33259 11.35880 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.004426 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.915286 B = 6324.882172 C = 7650.753249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C -0.016 4.016 4 C -0.097 4.097 5 C -0.136 4.136 6 C 0.524 3.476 7 O -0.557 6.557 8 N -0.606 5.606 9 C 0.072 3.928 10 C 0.179 3.821 11 H 0.069 0.931 12 N -0.712 5.712 13 C -0.247 4.247 14 H 0.071 0.929 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.125 4.125 24 C 0.120 3.880 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 6.108 9.397 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.180 4.180 3 C -0.052 4.052 4 C -0.135 4.135 5 C -0.176 4.176 6 C 0.313 3.687 7 O -0.437 6.437 8 N -0.338 5.338 9 C -0.055 4.055 10 C 0.067 3.933 11 H 0.087 0.913 12 N -0.353 5.353 13 C -0.378 4.378 14 H 0.089 0.911 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.091 4.091 22 C -0.186 4.186 23 C -0.183 4.183 24 C -0.002 4.002 25 H 0.232 0.768 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.223 0.777 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.357 6.252 9.092 15.133 hybrid contribution 0.346 -0.993 0.000 1.051 sum -10.011 5.259 9.092 14.510 Atomic orbital electron populations 1.24874 0.95970 1.01433 1.01318 1.23170 0.94620 1.00063 1.00101 1.18805 0.84715 1.01398 1.00314 1.21264 0.93311 1.00140 0.98805 1.21626 0.96715 1.00678 0.98570 1.20249 0.80773 0.82509 0.85128 1.90664 1.54656 1.49491 1.48869 1.48449 1.04910 1.45530 1.34923 1.23267 0.89550 0.98597 0.94037 1.21212 0.91287 0.88035 0.92810 0.91287 1.42449 1.59800 1.28070 1.05021 1.19168 1.23910 1.02131 0.92627 0.91070 1.24749 1.01033 0.99392 0.95271 1.69643 1.49320 1.38749 0.99930 0.86278 0.80259 0.82430 0.77228 1.21229 1.21720 1.21200 1.22046 0.94365 0.95989 0.96684 1.21669 1.01596 0.97063 0.98304 1.21581 0.98434 1.00661 0.97647 1.22298 0.92451 0.94020 0.91472 0.76771 0.89466 0.89315 0.90803 0.90944 0.88978 0.88585 0.92793 0.90492 0.77733 0.93307 0.92321 0.92854 0.92900 0.91217 0.93644 0.92097 0.91360 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.18 -2.03 13.34 -37.12 -0.50 -2.53 16 3 C -0.02 -0.15 5.70 -29.51 -0.17 -0.32 16 4 C -0.10 -1.14 4.46 -26.73 -0.12 -1.26 16 5 C -0.14 -1.65 4.89 -27.88 -0.14 -1.79 16 6 C 0.52 8.62 7.85 -10.98 -0.09 8.53 16 7 O -0.56 -10.92 16.24 5.56 0.09 -10.83 16 8 N -0.61 -9.97 3.31 -170.38 -0.56 -10.53 16 9 C 0.07 1.15 5.90 -3.07 -0.02 1.14 16 10 C 0.18 3.18 2.86 -66.10 -0.19 2.99 16 11 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 12 N -0.71 -16.19 4.61 -51.65 -0.24 -16.43 16 13 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 14 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 17 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.09 -1.37 0.83 -152.24 -0.13 -1.50 16 22 C -0.13 -1.65 8.59 37.16 0.32 -1.33 16 23 C -0.13 -1.97 8.22 37.16 0.31 -1.66 16 24 C 0.12 2.00 5.82 -2.41 -0.01 1.98 16 25 H 0.22 1.42 7.80 -54.08 -0.42 1.00 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.99 8.10 -51.93 -0.42 0.56 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 34 H 0.39 9.53 6.10 -40.82 -0.25 9.28 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 39 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 40 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 43 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.61 357.11 -7.30 -37.92 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.27 Total: 8.42 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.41 Total: -4.19 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.08 Total: -53.00 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.61 -7.30 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278634283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.450 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds