Wall clock time and date at job start Tue Mar 31 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.65427 * 0.02802 * 8 6 5 10 10 C 1.54318 * 107.27306 * 181.01791 * 9 8 6 11 11 H 1.09007 * 110.71990 * 140.55445 * 10 9 8 12 12 N 1.46501 * 110.72122 * 263.82779 * 10 9 8 13 13 C 1.36929 * 119.99983 * 273.54668 * 12 10 9 14 14 H 1.08004 * 120.00566 * 359.97438 * 13 12 10 15 15 C 1.38818 * 119.99965 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99810 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00021 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46980 * 60.00285 * 17 15 13 19 19 H 1.48500 * 109.46794 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47057 * 299.99823 * 17 15 13 21 21 C 1.55155 * 102.94249 * 22.19672 * 10 9 8 22 22 C 1.53000 * 111.00748 * 82.56806 * 21 10 9 23 23 C 1.53000 * 111.00187 * 206.42189 * 21 10 9 24 24 C 1.47425 * 125.64484 * 179.71725 * 8 6 5 25 25 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 28 28 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 29 29 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 30 30 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 31 31 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 32 32 H 1.09001 * 109.87968 * 300.44420 * 9 8 6 33 33 H 1.09004 * 109.87943 * 61.44520 * 9 8 6 34 34 H 0.97000 * 119.99534 * 93.55103 * 12 10 9 35 35 H 0.96998 * 119.99910 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46814 * 60.00517 * 22 21 10 37 37 H 1.09001 * 109.46749 * 180.02562 * 22 21 10 38 38 H 1.08999 * 109.47152 * 300.00043 * 22 21 10 39 39 H 1.09006 * 109.47359 * 59.99943 * 23 21 10 40 40 H 1.09008 * 109.46969 * 179.97438 * 23 21 10 41 41 H 1.09002 * 109.47356 * 299.99516 * 23 21 10 42 42 H 1.09005 * 110.36776 * 274.75035 * 24 8 6 43 43 H 1.08998 * 110.36838 * 37.06695 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.5735 1.3566 -1.5946 10 6 8.9240 1.8603 -2.1459 11 1 9.6336 2.0263 -1.3353 12 7 9.4671 0.9179 -3.1274 13 6 10.2300 -0.1402 -2.7111 14 1 10.4318 -0.2800 -1.6594 15 6 10.7451 -1.0328 -3.6412 16 7 10.4997 -0.8623 -4.9230 17 14 11.7854 -2.4768 -3.0733 18 1 10.9874 -3.3323 -2.1588 19 1 12.2102 -3.2744 -4.2517 20 1 12.9849 -1.9718 -2.3583 21 6 8.5432 3.2021 -2.8254 22 6 8.4735 4.3357 -1.8002 23 6 9.5211 3.5434 -3.9515 24 6 7.1378 2.8727 -3.3936 25 1 -1.0502 -0.0001 0.0004 26 1 3.0092 0.3479 0.9672 27 1 3.0098 -1.0104 -0.1831 28 1 2.7923 0.5859 -2.0681 29 1 2.7917 1.9442 -0.9178 30 1 5.0484 1.2819 -0.1332 31 1 5.0497 -0.0767 -1.2833 32 1 7.4805 1.6222 -0.5416 33 1 7.5028 0.2751 -1.7115 34 1 9.2863 1.0437 -4.0720 35 1 10.8599 -1.4858 -5.5729 36 1 9.4449 4.4509 -1.3194 37 1 8.2044 5.2645 -2.3033 38 1 7.7213 4.0993 -1.0477 39 1 9.5008 2.7534 -4.7023 40 1 9.2308 4.4883 -4.4110 41 1 10.5282 3.6316 -3.5439 42 1 7.2242 2.3365 -4.3386 43 1 6.5591 3.7868 -3.5268 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278634283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:50 Heat of formation + Delta-G solvation = -3.084001 kcal Electronic energy + Delta-G solvation = -21895.307727 eV Core-core repulsion = 18747.962837 eV Total energy + Delta-G solvation = -3147.344890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33935 -39.41173 -36.50069 -35.68732 -34.58587 -33.15574 -32.57060 -29.43311 -29.33491 -28.00303 -26.98199 -25.63787 -23.42496 -22.73247 -20.35644 -19.92626 -19.07143 -18.93082 -17.77937 -17.34474 -16.83979 -16.25964 -16.04124 -15.75592 -15.38887 -14.95148 -14.82318 -14.51728 -14.20174 -13.76959 -13.72154 -13.42556 -13.24377 -13.20548 -13.00112 -12.79092 -12.72890 -12.66834 -12.49420 -12.17426 -12.06992 -11.95518 -11.78812 -11.43001 -11.27069 -11.15880 -10.97021 -10.95099 -10.79033 -9.58362 -8.98091 -7.89587 -5.17810 1.52088 1.53535 1.59388 1.65137 1.84251 1.93495 2.14371 2.59924 3.38653 3.42194 3.52953 3.77413 3.84216 3.91641 4.06062 4.08100 4.16595 4.35248 4.46690 4.50080 4.60737 4.63302 4.69196 4.72352 4.79105 4.82313 4.90220 4.95610 5.04787 5.10754 5.12466 5.18280 5.20840 5.28225 5.33448 5.37916 5.42385 5.56206 5.62110 6.31372 6.62768 6.72772 7.17958 7.39007 8.13847 8.36461 9.33618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.004426 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.915286 B = 6324.882172 C = 7650.753249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.218 4.218 3 C -0.011 4.011 4 C -0.089 4.089 5 C -0.127 4.127 6 C 0.516 3.484 7 O -0.595 6.595 8 N -0.607 5.607 9 C 0.082 3.918 10 C 0.168 3.832 11 H 0.080 0.920 12 N -0.725 5.725 13 C -0.234 4.234 14 H 0.084 0.916 15 C -0.074 4.074 16 N -0.971 5.971 17 Si 0.968 3.032 18 H -0.278 1.278 19 H -0.305 1.305 20 H -0.277 1.277 21 C -0.077 4.077 22 C -0.122 4.122 23 C -0.121 4.121 24 C 0.119 3.881 25 H 0.242 0.758 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.374 0.626 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 6.622 12.292 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.218 4.218 3 C -0.047 4.047 4 C -0.127 4.127 5 C -0.166 4.166 6 C 0.307 3.693 7 O -0.477 6.477 8 N -0.339 5.339 9 C -0.044 4.044 10 C 0.058 3.942 11 H 0.098 0.902 12 N -0.364 5.364 13 C -0.365 4.365 14 H 0.102 0.898 15 C -0.266 4.266 16 N -0.621 5.621 17 Si 0.798 3.202 18 H -0.204 1.204 19 H -0.232 1.232 20 H -0.204 1.204 21 C -0.078 4.078 22 C -0.179 4.179 23 C -0.179 4.179 24 C -0.004 4.004 25 H 0.259 0.741 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.207 0.793 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.646 6.786 12.056 17.457 hybrid contribution 0.354 -1.064 -0.893 1.434 sum -10.293 5.721 11.163 16.226 Atomic orbital electron populations 1.25713 0.97022 1.00361 1.00252 1.23756 0.95713 1.01136 1.01167 1.18812 0.84101 1.01415 1.00364 1.21146 0.93127 0.99977 0.98497 1.21665 0.96681 0.99988 0.98298 1.21073 0.80265 0.82401 0.85540 1.90645 1.55446 1.51134 1.50504 1.48557 1.05249 1.45366 1.34741 1.23080 0.88139 0.97313 0.95835 1.21494 0.92104 0.88289 0.92291 0.90189 1.42629 1.59933 1.28507 1.05365 1.19611 1.22098 1.01852 0.92989 0.89792 1.25491 1.03355 1.02361 0.95425 1.69815 1.51511 1.39806 1.01008 0.85292 0.79050 0.79610 0.76266 1.20366 1.23156 1.20354 1.22001 0.92968 0.95881 0.96974 1.21626 1.02604 0.96127 0.97544 1.21516 0.98559 1.00632 0.97148 1.22238 0.93530 0.93872 0.90755 0.74116 0.87296 0.88264 0.93245 0.92087 0.85758 0.87644 0.88853 0.92384 0.79277 0.94341 0.91037 0.91544 0.92285 0.94510 0.91329 0.92327 0.94272 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.08 19.25 74.32 1.43 -2.65 16 2 C -0.22 -4.63 13.34 31.13 0.42 -4.22 16 3 C -0.01 -0.19 5.70 28.79 0.16 -0.02 16 4 C -0.09 -2.01 4.46 30.59 0.14 -1.87 16 5 C -0.13 -2.80 4.89 29.85 0.15 -2.65 16 6 C 0.52 16.46 7.85 87.66 0.69 17.15 16 7 O -0.60 -23.45 16.24 -3.01 -0.05 -23.50 16 8 N -0.61 -19.26 3.31 -811.35 -2.69 -21.94 16 9 C 0.08 2.44 5.90 86.73 0.51 2.95 16 10 C 0.17 5.71 2.86 46.18 0.13 5.84 16 11 H 0.08 2.58 8.03 -2.38 -0.02 2.56 16 12 N -0.72 -32.97 4.61 -317.33 -1.46 -34.44 16 13 C -0.23 -11.82 9.98 84.04 0.84 -10.98 16 14 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 16 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 17 Si 0.97 44.07 29.55 68.60 2.03 46.09 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 C -0.08 -2.25 0.83 -50.71 -0.04 -2.29 16 22 C -0.12 -2.71 8.59 71.98 0.62 -2.09 16 23 C -0.12 -3.74 8.22 71.98 0.59 -3.14 16 24 C 0.12 3.93 5.82 86.93 0.51 4.44 16 25 H 0.24 2.68 7.80 -4.41 -0.03 2.64 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 29 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 30 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 34 H 0.37 19.00 6.10 -92.71 -0.57 18.44 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.26 7.91 -2.39 -0.02 1.25 16 39 H 0.04 1.38 6.38 -2.38 -0.02 1.36 16 40 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.51 7.99 -2.38 -0.02 1.49 16 43 H 0.07 2.32 7.95 -2.39 -0.02 2.30 16 Total: -1.00 -67.97 357.11 5.12 -62.85 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.40 Total: 31.37 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.60 Total: -3.11 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.87 Total: -113.71 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.97 5.12 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278634283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.770 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds