Wall clock time and date at job start Tue Mar 31 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47534 * 64.33866 * 3 2 1 5 5 C 1.53005 * 109.47755 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47393 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46951 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00164 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99849 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00133 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84469 * 336.19957 * 10 9 7 12 12 C 1.54049 * 113.61109 * 107.50629 * 10 9 7 13 13 C 1.53786 * 86.98426 * 89.11993 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.83585 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.01654 * 13 12 10 16 16 N 1.46504 * 109.46983 * 85.86203 * 15 13 12 17 17 C 1.36936 * 119.99949 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31609 * 120.00407 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99763 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47084 * 90.00081 * 21 19 17 23 23 H 1.48508 * 109.47085 * 209.99975 * 21 19 17 24 24 H 1.48501 * 109.47162 * 329.99981 * 21 19 17 25 25 C 1.53781 * 87.17350 * 25.42668 * 13 12 10 26 26 H 4.44646 * 5.63272 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47729 * 304.33320 * 3 2 1 28 28 H 1.09007 * 109.46998 * 184.33227 * 3 2 1 29 29 H 1.09004 * 109.47624 * 59.99232 * 4 3 2 30 30 H 1.09006 * 109.47191 * 299.99812 * 4 3 2 31 31 H 1.09001 * 109.46407 * 59.99455 * 5 4 3 32 32 H 1.09000 * 109.46614 * 300.00217 * 5 4 3 33 33 H 1.08996 * 109.47173 * 59.99628 * 6 5 4 34 34 H 1.09007 * 109.46705 * 300.00055 * 6 5 4 35 35 H 0.96999 * 120.00152 * 0.02562 * 9 7 6 36 36 H 1.08992 * 113.69868 * 334.60103 * 12 10 9 37 37 H 1.09000 * 113.61076 * 203.61862 * 12 10 9 38 38 H 1.09000 * 109.47107 * 205.86243 * 15 13 12 39 39 H 1.08997 * 109.47112 * 325.86394 * 15 13 12 40 40 H 0.96999 * 119.99647 * 0.02562 * 16 15 13 41 41 H 0.96996 * 120.00783 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61567 * 89.07405 * 25 13 12 43 43 H 1.09000 * 113.61379 * 219.89528 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.6237 -1.3001 5 6 4.6864 -0.6225 -1.3005 6 6 5.1967 -1.2475 -2.6004 7 6 6.7037 -1.2468 -2.6003 8 8 7.3099 -0.7909 -1.6540 9 7 7.3778 -1.7529 -3.6519 10 6 8.8428 -1.7517 -3.6522 11 1 9.2655 -0.9873 -3.0002 12 6 9.4610 -3.1483 -3.4505 13 6 9.4068 -3.3038 -4.9795 14 1 8.4710 -3.7290 -5.3422 15 6 10.6399 -3.9910 -5.5697 16 7 10.4596 -5.4440 -5.5204 17 6 11.4405 -6.2722 -5.9972 18 1 12.3471 -5.8541 -6.4092 19 6 11.2695 -7.6489 -5.9510 20 7 12.2123 -8.4449 -6.4088 21 14 9.7011 -8.3719 -5.2390 22 1 8.6952 -8.5328 -6.3195 23 1 9.9959 -9.6966 -4.6359 24 1 9.1653 -7.4611 -4.1956 25 6 9.4586 -1.7691 -5.0612 26 1 -1.0498 0.0001 -0.0003 27 1 3.0097 -0.5787 0.8486 28 1 3.0089 1.0256 0.0776 29 1 2.7927 -0.0443 -2.1488 30 1 2.7936 -1.6487 -1.3779 31 1 5.0503 -1.2017 -0.4518 32 1 5.0489 0.4025 -1.2229 33 1 4.8327 -0.6687 -3.4492 34 1 4.8341 -2.2726 -2.6774 35 1 6.8930 -2.1172 -4.4090 36 1 8.8110 -3.8423 -2.9177 37 1 10.4744 -3.1234 -3.0498 38 1 10.7707 -3.6760 -6.6050 39 1 11.5215 -3.7144 -4.9916 40 1 9.6452 -5.8194 -5.1507 41 1 12.0931 -9.4070 -6.3761 42 1 10.4713 -1.3678 -5.1000 43 1 8.8077 -1.3504 -5.8288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283031442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:55 Heat of formation + Delta-G solvation = 26.144216 kcal Electronic energy + Delta-G solvation = -20352.983179 eV Core-core repulsion = 17206.905719 eV Total energy + Delta-G solvation = -3146.077460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32657 -38.57127 -36.44947 -34.70954 -33.55521 -33.11864 -31.19437 -30.18252 -27.32516 -25.61136 -25.49354 -23.14431 -21.84392 -21.34781 -20.62777 -19.23101 -18.41324 -17.60032 -17.11940 -16.40449 -16.01206 -15.17964 -14.95165 -14.64969 -14.43697 -14.33498 -13.93794 -13.73431 -13.27796 -13.19378 -12.66608 -12.54737 -12.34449 -12.07874 -12.06346 -11.77904 -11.62684 -11.40988 -11.04861 -10.90667 -10.65093 -10.57287 -10.45675 -10.25642 -10.18163 -9.97310 -9.87659 -9.57754 -9.08249 -8.87051 -7.21308 -5.76302 -3.11261 2.43679 2.48070 2.49288 3.01035 3.36837 3.39358 3.44737 3.97220 4.45140 4.53221 4.55801 4.59118 4.61170 4.66977 4.91316 4.93837 5.00804 5.01645 5.12753 5.30098 5.33988 5.41668 5.54254 5.59998 5.64492 5.67608 5.69152 5.83171 5.85194 5.86196 5.95323 5.98584 6.10393 6.13608 6.26441 6.55472 6.68539 6.82392 7.25478 7.37604 8.00565 8.09835 8.43033 9.22589 9.95104 10.15386 11.42276 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002591 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.679182 B =10802.524972 C =11762.887908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.542 6.542 9 N -0.712 5.712 10 C 0.115 3.885 11 H 0.100 0.900 12 C -0.141 4.141 13 C -0.119 4.119 14 H 0.085 0.915 15 C 0.166 3.834 16 N -0.755 5.755 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.136 4.136 26 H 0.216 0.784 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.096 0.904 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.982 19.085 8.807 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.182 4.182 7 C 0.300 3.700 8 O -0.419 6.419 9 N -0.363 5.363 10 C 0.010 3.990 11 H 0.118 0.882 12 C -0.180 4.180 13 C -0.137 4.137 14 H 0.104 0.896 15 C 0.039 3.961 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.175 4.175 26 H 0.233 0.767 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.192 0.808 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.305 19.342 9.390 28.896 hybrid contribution -1.503 -1.012 0.005 1.812 sum -20.809 18.330 9.395 29.279 Atomic orbital electron populations 1.24925 0.96017 1.01366 1.00981 1.23230 0.94671 1.00216 1.00359 1.18769 0.84504 1.02613 0.99291 1.21567 0.95327 1.01518 0.96836 1.21346 0.93880 1.02266 0.96765 1.21689 0.91883 1.03784 1.00816 1.20725 0.90204 0.76956 0.82120 1.90700 1.70546 1.46165 1.34489 1.45752 1.06798 1.62510 1.21221 1.21986 0.79590 0.98991 0.98482 0.88239 1.23483 1.01691 0.95992 0.96786 1.22810 1.00257 0.94747 0.95932 0.89624 1.20620 0.93808 0.84175 0.97478 1.42694 1.20617 1.01105 1.75653 1.19084 0.97787 0.87801 1.32670 0.89263 1.24680 0.97624 0.95869 1.01137 1.69696 1.33371 1.03079 1.52167 0.86528 0.84227 0.78615 0.79051 1.21156 1.21753 1.20359 1.23286 1.01760 0.96780 0.95643 0.76736 0.89361 0.89403 0.91461 0.91399 0.90821 0.90875 0.88831 0.88748 0.76464 0.91548 0.88906 0.95537 0.95388 0.80752 0.93090 0.88555 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.58 19.25 29.55 0.57 -1.02 16 2 C -0.18 -1.50 13.34 -37.12 -0.50 -2.00 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.70 5.17 -26.73 -0.14 -0.83 16 5 C -0.10 -0.76 4.50 -26.73 -0.12 -0.88 16 6 C -0.14 -1.00 5.70 -27.88 -0.16 -1.16 16 7 C 0.51 5.59 7.83 -10.99 -0.09 5.50 16 8 O -0.54 -8.05 15.58 5.56 0.09 -7.96 16 9 N -0.71 -7.15 5.26 -52.88 -0.28 -7.42 16 10 C 0.11 1.34 4.33 -66.98 -0.29 1.05 16 11 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 12 C -0.14 -1.95 7.45 -25.77 -0.19 -2.14 16 13 C -0.12 -1.68 3.62 -89.80 -0.33 -2.01 16 14 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 15 C 0.17 3.13 6.08 -4.04 -0.02 3.11 16 16 N -0.76 -17.95 5.41 -59.91 -0.32 -18.28 16 17 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.07 5.50 -17.44 -0.10 -0.02 16 20 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 21 Si 0.89 22.23 27.74 -169.99 -4.71 17.51 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.14 -1.51 7.39 -25.92 -0.19 -1.70 16 26 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.11 8.70 -40.82 -0.36 2.75 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.03 0.54 7.88 -51.93 -0.41 0.13 16 40 H 0.36 8.35 5.53 -40.82 -0.23 8.12 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.75 362.42 -8.16 -42.91 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.29 Total: 6.09 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.88 Total: -9.48 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.17 Total: -54.53 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.75 -8.16 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283031442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.050 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds