Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47534 * 64.33866 * 3 2 1 5 5 C 1.53005 * 109.47755 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47393 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46951 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00164 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99849 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00133 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84469 * 336.19957 * 10 9 7 12 12 C 1.54049 * 113.61109 * 107.50629 * 10 9 7 13 13 C 1.53786 * 86.98426 * 89.11993 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.83585 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.01654 * 13 12 10 16 16 N 1.46504 * 109.46983 * 85.86203 * 15 13 12 17 17 C 1.36936 * 119.99949 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31609 * 120.00407 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99763 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47084 * 90.00081 * 21 19 17 23 23 H 1.48508 * 109.47085 * 209.99975 * 21 19 17 24 24 H 1.48501 * 109.47162 * 329.99981 * 21 19 17 25 25 C 1.53781 * 87.17350 * 25.42668 * 13 12 10 26 26 H 4.44646 * 5.63272 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47729 * 304.33320 * 3 2 1 28 28 H 1.09007 * 109.46998 * 184.33227 * 3 2 1 29 29 H 1.09004 * 109.47624 * 59.99232 * 4 3 2 30 30 H 1.09006 * 109.47191 * 299.99812 * 4 3 2 31 31 H 1.09001 * 109.46407 * 59.99455 * 5 4 3 32 32 H 1.09000 * 109.46614 * 300.00217 * 5 4 3 33 33 H 1.08996 * 109.47173 * 59.99628 * 6 5 4 34 34 H 1.09007 * 109.46705 * 300.00055 * 6 5 4 35 35 H 0.96999 * 120.00152 * 0.02562 * 9 7 6 36 36 H 1.08992 * 113.69868 * 334.60103 * 12 10 9 37 37 H 1.09000 * 113.61076 * 203.61862 * 12 10 9 38 38 H 1.09000 * 109.47107 * 205.86243 * 15 13 12 39 39 H 1.08997 * 109.47112 * 325.86394 * 15 13 12 40 40 H 0.96999 * 119.99647 * 0.02562 * 16 15 13 41 41 H 0.96996 * 120.00783 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.61567 * 89.07405 * 25 13 12 43 43 H 1.09000 * 113.61379 * 219.89528 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.6237 -1.3001 5 6 4.6864 -0.6225 -1.3005 6 6 5.1967 -1.2475 -2.6004 7 6 6.7037 -1.2468 -2.6003 8 8 7.3099 -0.7909 -1.6540 9 7 7.3778 -1.7529 -3.6519 10 6 8.8428 -1.7517 -3.6522 11 1 9.2655 -0.9873 -3.0002 12 6 9.4610 -3.1483 -3.4505 13 6 9.4068 -3.3038 -4.9795 14 1 8.4710 -3.7290 -5.3422 15 6 10.6399 -3.9910 -5.5697 16 7 10.4596 -5.4440 -5.5204 17 6 11.4405 -6.2722 -5.9972 18 1 12.3471 -5.8541 -6.4092 19 6 11.2695 -7.6489 -5.9510 20 7 12.2123 -8.4449 -6.4088 21 14 9.7011 -8.3719 -5.2390 22 1 8.6952 -8.5328 -6.3195 23 1 9.9959 -9.6966 -4.6359 24 1 9.1653 -7.4611 -4.1956 25 6 9.4586 -1.7691 -5.0612 26 1 -1.0498 0.0001 -0.0003 27 1 3.0097 -0.5787 0.8486 28 1 3.0089 1.0256 0.0776 29 1 2.7927 -0.0443 -2.1488 30 1 2.7936 -1.6487 -1.3779 31 1 5.0503 -1.2017 -0.4518 32 1 5.0489 0.4025 -1.2229 33 1 4.8327 -0.6687 -3.4492 34 1 4.8341 -2.2726 -2.6774 35 1 6.8930 -2.1172 -4.4090 36 1 8.8110 -3.8423 -2.9177 37 1 10.4744 -3.1234 -3.0498 38 1 10.7707 -3.6760 -6.6050 39 1 11.5215 -3.7144 -4.9916 40 1 9.6452 -5.8194 -5.1507 41 1 12.0931 -9.4070 -6.3761 42 1 10.4713 -1.3678 -5.1000 43 1 8.8077 -1.3504 -5.8288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283031442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = 3.511183 kcal Electronic energy + Delta-G solvation = -20353.964621 eV Core-core repulsion = 17206.905719 eV Total energy + Delta-G solvation = -3147.058902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25709 -39.57650 -37.01711 -36.45782 -34.44434 -34.01876 -33.14118 -30.80101 -28.83921 -26.62758 -26.25388 -24.73447 -22.99462 -22.41035 -21.36380 -20.44578 -19.47164 -18.90140 -17.99386 -17.03321 -16.91949 -16.64248 -16.06142 -15.83781 -15.70679 -15.14735 -15.04974 -14.88039 -14.53927 -14.11505 -13.95121 -13.78485 -13.50664 -13.35579 -12.99446 -12.73494 -12.67852 -12.52419 -12.17551 -12.16429 -11.87908 -11.70951 -11.58555 -11.39850 -11.18892 -11.13656 -10.96847 -10.90097 -10.78667 -9.99279 -9.28013 -8.03278 -5.36322 1.36541 1.40860 1.48335 1.67444 1.88448 1.93245 2.23370 2.47988 3.27395 3.47286 3.50089 3.60187 3.81865 3.87531 3.93758 4.02292 4.07049 4.12442 4.42391 4.45531 4.54249 4.64391 4.72895 4.79135 4.84043 4.85769 4.89996 4.92670 4.96428 4.99786 5.11717 5.13441 5.22331 5.26853 5.35214 5.36708 5.46672 5.69896 5.76306 6.21043 6.61309 6.72575 7.08222 7.31443 7.85453 8.04615 9.18407 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002591 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.679182 B =10802.524972 C =11762.887908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.135 4.135 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.704 5.704 10 C 0.124 3.876 11 H 0.089 0.911 12 C -0.146 4.146 13 C -0.113 4.113 14 H 0.097 0.903 15 C 0.161 3.839 16 N -0.757 5.757 17 C -0.237 4.237 18 H 0.054 0.946 19 C -0.068 4.068 20 N -0.985 5.985 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.297 1.297 24 H -0.253 1.253 25 C -0.118 4.118 26 H 0.240 0.760 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.021 0.979 40 H 0.366 0.634 41 H 0.258 0.742 42 H 0.101 0.899 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.024 20.093 8.779 31.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.055 4.055 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.174 4.174 7 C 0.297 3.703 8 O -0.468 6.468 9 N -0.355 5.355 10 C 0.018 3.982 11 H 0.107 0.893 12 C -0.185 4.185 13 C -0.132 4.132 14 H 0.115 0.885 15 C 0.035 3.965 16 N -0.403 5.403 17 C -0.368 4.368 18 H 0.072 0.928 19 C -0.259 4.259 20 N -0.636 5.636 21 Si 0.786 3.214 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.177 1.177 25 C -0.156 4.156 26 H 0.257 0.743 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.199 0.801 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.382 20.396 9.344 31.690 hybrid contribution -0.472 -1.257 0.002 1.343 sum -22.854 19.139 9.345 31.240 Atomic orbital electron populations 1.25694 0.96983 1.00585 1.00165 1.23751 0.95586 1.01034 1.01203 1.18835 0.83971 1.03043 0.99655 1.21463 0.94171 1.01711 0.96853 1.21279 0.94644 1.01449 0.96514 1.21734 0.88788 1.05349 1.01531 1.21429 0.91720 0.75797 0.81309 1.90687 1.71732 1.48190 1.36189 1.45701 1.06060 1.62111 1.21642 1.21768 0.80683 0.97113 0.98623 0.89278 1.23498 1.01288 0.97358 0.96388 1.22755 0.98284 0.96506 0.95652 0.88470 1.20824 0.96126 0.81826 0.97703 1.42711 1.19630 1.02712 1.75231 1.19080 0.97587 0.88614 1.31520 0.92779 1.25567 1.01631 0.96351 1.02347 1.69888 1.36071 1.03276 1.54325 0.85342 0.79652 0.77481 0.78888 1.20026 1.22409 1.17728 1.23205 1.02620 0.94021 0.95765 0.74323 0.89264 0.88924 0.90715 0.91179 0.92417 0.91820 0.86141 0.86919 0.74751 0.92457 0.89967 0.95583 0.96074 0.80122 0.93349 0.88103 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.84 19.25 74.32 1.43 -1.41 16 2 C -0.22 -3.26 13.34 31.12 0.42 -2.84 16 3 C -0.02 -0.22 5.70 28.78 0.16 -0.06 16 4 C -0.10 -1.07 5.17 30.59 0.16 -0.91 16 5 C -0.10 -1.31 4.50 30.59 0.14 -1.17 16 6 C -0.13 -1.51 5.70 29.85 0.17 -1.34 16 7 C 0.51 10.04 7.83 87.66 0.69 10.73 16 8 O -0.59 -17.07 15.58 -3.02 -0.05 -17.11 16 9 N -0.70 -12.14 5.26 -439.61 -2.31 -14.46 16 10 C 0.12 2.65 4.33 45.61 0.20 2.85 16 11 H 0.09 2.16 7.46 -2.39 -0.02 2.14 16 12 C -0.15 -3.84 7.45 31.21 0.23 -3.61 16 13 C -0.11 -2.93 3.62 -10.26 -0.04 -2.97 16 14 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 15 C 0.16 5.89 6.08 86.38 0.53 6.42 16 16 N -0.76 -35.24 5.41 -343.44 -1.86 -37.10 16 17 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 18 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 20 N -0.98 -63.79 13.97 21.65 0.30 -63.48 16 21 Si 0.96 45.55 27.74 68.60 1.90 47.45 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 24 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 25 C -0.12 -2.26 7.39 31.12 0.23 -2.03 16 26 H 0.24 1.43 7.80 -4.43 -0.03 1.40 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.42 4.82 8.70 -92.71 -0.81 4.01 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.02 0.81 7.88 -2.39 -0.02 0.79 16 40 H 0.37 16.11 5.53 -92.71 -0.51 15.60 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.10 1.89 8.10 -2.39 -0.02 1.87 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.74 362.42 3.25 -73.49 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.39 Total: 23.95 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 5.66 Total: -12.74 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.87 Total: -115.04 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.05 Total: -17.11 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Total: -76.74 3.25 -73.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283031442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.998 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds