Wall clock time and date at job start Tue Mar 31 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00031 * 2 1 4 4 O 1.21615 * 120.00341 * 185.13295 * 3 2 1 5 5 C 1.43210 * 119.99972 * 5.13067 * 3 2 1 6 6 C 3.48142 * 79.71813 * 3.37714 * 2 1 3 7 7 C 4.89317 * 73.94806 * 3.85027 * 2 1 3 8 8 C 1.52998 * 109.47010 * 15.94580 * 7 6 5 9 9 C 1.52998 * 109.47232 * 135.94812 * 7 6 5 10 10 C 1.52999 * 109.46732 * 255.94936 * 7 6 5 11 11 C 1.46503 * 120.00353 * 179.97438 * 2 1 3 12 12 C 1.53773 * 113.61279 * 55.11565 * 11 2 1 13 13 C 1.53782 * 87.07855 * 220.02084 * 12 11 2 14 14 N 1.46505 * 113.61326 * 139.98439 * 13 12 11 15 15 C 1.36934 * 119.99893 * 155.00039 * 14 13 12 16 16 H 1.08001 * 120.00155 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00020 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99626 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00114 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46918 * 60.00074 * 19 17 15 21 21 H 1.48498 * 109.46998 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47331 * 300.00035 * 19 17 15 23 23 C 1.53773 * 87.08162 * 25.43370 * 13 12 11 24 24 H 1.08994 * 109.47388 * 269.99983 * 1 2 3 25 25 H 1.09000 * 109.46892 * 30.00848 * 1 2 3 26 26 H 1.09003 * 109.46419 * 150.00053 * 1 2 3 27 27 H 1.09003 * 109.47236 * 60.00471 * 8 7 6 28 28 H 1.09000 * 109.46827 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47537 * 300.00151 * 8 7 6 30 30 H 1.09007 * 109.46931 * 59.99514 * 9 7 6 31 31 H 1.08996 * 109.47027 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47270 * 300.00160 * 9 7 6 33 33 H 1.08998 * 109.47760 * 60.00394 * 10 7 6 34 34 H 1.09007 * 109.46994 * 180.02562 * 10 7 6 35 35 H 1.08998 * 109.47361 * 299.99744 * 10 7 6 36 36 H 1.08998 * 112.90614 * 186.36657 * 11 2 1 37 37 H 1.09003 * 113.61793 * 105.47265 * 12 11 2 38 38 H 1.08999 * 113.61629 * 334.56540 * 12 11 2 39 39 H 1.09000 * 113.61210 * 270.87884 * 13 12 11 40 40 H 0.96999 * 120.00018 * 334.99692 * 14 13 12 41 41 H 0.96997 * 119.99539 * 180.02562 * 18 17 15 42 42 H 1.08998 * 113.61951 * 89.11815 * 23 13 12 43 43 H 1.09004 * 113.61204 * 220.01774 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1694 -0.0942 5 6 1.4271 2.4050 0.1109 6 6 0.8436 3.4196 0.2018 7 6 0.1120 4.6918 0.3158 8 6 1.0456 5.8506 -0.0399 9 6 -1.0789 4.6831 -0.6447 10 6 -0.3910 4.8640 1.7504 11 6 2.1976 -1.2687 0.0006 12 6 1.8077 -2.2056 -1.1548 13 6 1.8982 -3.3611 -0.1441 14 7 0.8409 -4.3628 -0.3017 15 6 1.0449 -5.6470 0.1275 16 1 1.9855 -5.9216 0.5819 17 6 0.0429 -6.5961 -0.0214 18 7 -1.1032 -6.2616 -0.5756 19 14 0.3215 -8.3481 0.5634 20 1 0.5985 -8.3448 2.0224 21 1 -0.8925 -9.1593 0.2925 22 1 1.4796 -8.9329 -0.1589 23 6 1.6042 -2.3221 0.9508 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3632 -0.8900 -0.5139 27 1 1.4040 5.7279 -1.0620 28 1 0.5037 6.7926 0.0441 29 1 1.8940 5.8568 0.6444 30 1 -1.7440 3.8574 -0.3913 31 1 -1.6209 5.6249 -0.5599 32 1 -0.7206 4.5603 -1.6668 33 1 0.4574 4.8702 2.4347 34 1 -0.9332 5.8059 1.8347 35 1 -1.0561 4.0384 2.0038 36 1 3.2739 -1.1371 0.1118 37 1 2.5557 -2.2579 -1.9460 38 1 0.8002 -2.0353 -1.5341 39 1 2.8927 -3.8016 -0.0724 40 1 -0.0037 -4.1164 -0.7101 41 1 -1.8035 -6.9247 -0.6793 42 1 0.5411 -2.1836 1.1472 43 1 2.1880 -2.4685 1.8597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284760776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:46 Heat of formation + Delta-G solvation = 40.252136 kcal Electronic energy + Delta-G solvation = -21013.939303 eV Core-core repulsion = 17868.473608 eV Total energy + Delta-G solvation = -3145.465694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12776 -38.10562 -37.74355 -34.81825 -33.22570 -32.13510 -29.95912 -27.71000 -27.70560 -27.02881 -25.38263 -25.11134 -23.72246 -21.89499 -20.28755 -18.86336 -17.79412 -17.11836 -16.69988 -16.05681 -15.47340 -14.82922 -14.69161 -14.63557 -14.51701 -14.03612 -13.24164 -13.03326 -12.87817 -12.84253 -12.81732 -12.25173 -12.15011 -12.11550 -12.10809 -11.79245 -11.66831 -11.63542 -11.26189 -10.90838 -10.75580 -10.52878 -10.45434 -10.41223 -10.27272 -10.08914 -9.95880 -9.60549 -8.91158 -8.49666 -7.00971 -5.81769 -3.10714 1.51070 2.19393 2.98665 3.42191 3.46807 3.47609 3.48137 3.83381 4.50919 4.52968 4.56859 4.57036 4.95775 5.08087 5.16468 5.18969 5.20047 5.20216 5.34216 5.36848 5.43198 5.43599 5.44056 5.55110 5.62046 5.68953 5.75304 5.83982 5.85599 5.86145 5.94044 6.12518 6.27434 6.32305 6.41103 6.54991 6.74859 7.00344 7.11840 7.41996 7.66929 8.09568 8.36719 9.48047 10.04331 10.39107 11.40561 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033403 B = 0.002891 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.050240 B = 9684.451874 C =10129.773544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.586 5.586 3 C 0.627 3.373 4 O -0.531 6.531 5 C -0.209 4.209 6 C -0.081 4.081 7 C 0.038 3.962 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.141 4.141 11 C 0.116 3.884 12 C -0.163 4.163 13 C 0.170 3.830 14 N -0.709 5.709 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.174 4.174 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 23.261 1.545 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.317 5.317 3 C 0.416 3.584 4 O -0.409 6.409 5 C -0.212 4.212 6 C -0.084 4.084 7 C 0.038 3.962 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.199 4.199 11 C 0.013 3.987 12 C -0.203 4.203 13 C 0.057 3.943 14 N -0.347 5.347 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.216 4.216 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.262 23.004 1.544 23.058 hybrid contribution -0.317 -0.888 0.217 0.968 sum -0.055 22.116 1.761 22.186 Atomic orbital electron populations 1.21792 0.79118 1.03440 1.02275 1.47719 1.07249 1.05378 1.71330 1.14842 0.85670 0.80863 0.77052 1.90824 1.13060 1.86929 1.50103 1.20806 0.99670 0.95539 1.05196 1.22454 0.96977 0.94679 0.94277 1.17914 0.93976 0.86807 0.97504 1.21912 0.99144 0.96479 1.02402 1.21906 0.96322 1.02864 0.98788 1.21900 1.01656 1.02652 0.93645 1.22716 0.97338 0.79589 0.99014 1.23946 1.01882 0.96873 0.97591 1.21335 0.93852 0.87184 0.91906 1.42344 1.14222 1.06564 1.71579 1.19271 0.99424 0.86296 1.32600 0.91018 1.24767 0.96245 0.98375 1.01449 1.69648 1.05215 1.33982 1.49273 0.86248 0.76828 0.84540 0.78457 1.21210 1.21691 1.21181 1.24345 1.01328 0.96779 0.99197 0.92286 0.91424 0.89639 0.91941 0.91239 0.91915 0.91780 0.91163 0.91935 0.91956 0.91159 0.91809 0.86485 0.91503 0.89926 0.90112 0.78100 0.93390 0.89849 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 8.80 59.85 0.53 1.47 16 2 N -0.59 -8.74 3.09 -175.88 -0.54 -9.28 16 3 C 0.63 10.18 7.52 -14.33 -0.11 10.07 16 4 O -0.53 -10.23 16.57 5.26 0.09 -10.15 16 5 C -0.21 -2.91 11.76 -38.83 -0.46 -3.37 16 6 C -0.08 -0.92 11.77 -37.12 -0.44 -1.36 16 7 C 0.04 0.29 0.95 -157.30 -0.15 0.14 16 8 C -0.14 -0.95 8.43 37.16 0.31 -0.63 16 9 C -0.14 -0.89 8.43 37.16 0.31 -0.58 16 10 C -0.14 -0.91 8.43 37.16 0.31 -0.60 16 11 C 0.12 1.85 4.22 -67.12 -0.28 1.56 16 12 C -0.16 -2.72 7.36 -25.92 -0.19 -2.91 16 13 C 0.17 3.31 4.48 -67.12 -0.30 3.00 16 14 N -0.71 -17.33 5.40 -52.64 -0.28 -17.62 16 15 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 19 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 C -0.17 -2.99 7.38 -25.92 -0.19 -3.18 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.73 7.00 -51.93 -0.36 0.37 16 26 H 0.09 1.09 6.30 -51.93 -0.33 0.76 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.12 1.92 7.21 -51.93 -0.37 1.54 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.38 6.57 -51.93 -0.34 1.04 16 39 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 40 H 0.38 9.90 7.92 -40.82 -0.32 9.57 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.47 7.00 -51.93 -0.36 1.10 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -31.79 357.94 -7.67 -39.46 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.13 Total: 5.67 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.90 Total: -3.64 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.10 Total: -53.83 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.79 -7.67 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284760776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.716 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds