Wall clock time and date at job start Tue Mar 31 2020 00:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00031 * 2 1 4 4 O 1.21615 * 120.00341 * 185.13295 * 3 2 1 5 5 C 1.43210 * 119.99972 * 5.13067 * 3 2 1 6 6 C 3.48142 * 79.71813 * 3.37714 * 2 1 3 7 7 C 4.89317 * 73.94806 * 3.85027 * 2 1 3 8 8 C 1.52998 * 109.47010 * 15.94580 * 7 6 5 9 9 C 1.52998 * 109.47232 * 135.94812 * 7 6 5 10 10 C 1.52999 * 109.46732 * 255.94936 * 7 6 5 11 11 C 1.46503 * 120.00353 * 179.97438 * 2 1 3 12 12 C 1.53773 * 113.61279 * 55.11565 * 11 2 1 13 13 C 1.53782 * 87.07855 * 220.02084 * 12 11 2 14 14 N 1.46505 * 113.61326 * 139.98439 * 13 12 11 15 15 C 1.36934 * 119.99893 * 155.00039 * 14 13 12 16 16 H 1.08001 * 120.00155 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00020 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99626 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00114 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46918 * 60.00074 * 19 17 15 21 21 H 1.48498 * 109.46998 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47331 * 300.00035 * 19 17 15 23 23 C 1.53773 * 87.08162 * 25.43370 * 13 12 11 24 24 H 1.08994 * 109.47388 * 269.99983 * 1 2 3 25 25 H 1.09000 * 109.46892 * 30.00848 * 1 2 3 26 26 H 1.09003 * 109.46419 * 150.00053 * 1 2 3 27 27 H 1.09003 * 109.47236 * 60.00471 * 8 7 6 28 28 H 1.09000 * 109.46827 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47537 * 300.00151 * 8 7 6 30 30 H 1.09007 * 109.46931 * 59.99514 * 9 7 6 31 31 H 1.08996 * 109.47027 * 179.97438 * 9 7 6 32 32 H 1.09000 * 109.47270 * 300.00160 * 9 7 6 33 33 H 1.08998 * 109.47760 * 60.00394 * 10 7 6 34 34 H 1.09007 * 109.46994 * 180.02562 * 10 7 6 35 35 H 1.08998 * 109.47361 * 299.99744 * 10 7 6 36 36 H 1.08998 * 112.90614 * 186.36657 * 11 2 1 37 37 H 1.09003 * 113.61793 * 105.47265 * 12 11 2 38 38 H 1.08999 * 113.61629 * 334.56540 * 12 11 2 39 39 H 1.09000 * 113.61210 * 270.87884 * 13 12 11 40 40 H 0.96999 * 120.00018 * 334.99692 * 14 13 12 41 41 H 0.96997 * 119.99539 * 180.02562 * 18 17 15 42 42 H 1.08998 * 113.61951 * 89.11815 * 23 13 12 43 43 H 1.09004 * 113.61204 * 220.01774 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1694 -0.0942 5 6 1.4271 2.4050 0.1109 6 6 0.8436 3.4196 0.2018 7 6 0.1120 4.6918 0.3158 8 6 1.0456 5.8506 -0.0399 9 6 -1.0789 4.6831 -0.6447 10 6 -0.3910 4.8640 1.7504 11 6 2.1976 -1.2687 0.0006 12 6 1.8077 -2.2056 -1.1548 13 6 1.8982 -3.3611 -0.1441 14 7 0.8409 -4.3628 -0.3017 15 6 1.0449 -5.6470 0.1275 16 1 1.9855 -5.9216 0.5819 17 6 0.0429 -6.5961 -0.0214 18 7 -1.1032 -6.2616 -0.5756 19 14 0.3215 -8.3481 0.5634 20 1 0.5985 -8.3448 2.0224 21 1 -0.8925 -9.1593 0.2925 22 1 1.4796 -8.9329 -0.1589 23 6 1.6042 -2.3221 0.9508 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3632 -0.8900 -0.5139 27 1 1.4040 5.7279 -1.0620 28 1 0.5037 6.7926 0.0441 29 1 1.8940 5.8568 0.6444 30 1 -1.7440 3.8574 -0.3913 31 1 -1.6209 5.6249 -0.5599 32 1 -0.7206 4.5603 -1.6668 33 1 0.4574 4.8702 2.4347 34 1 -0.9332 5.8059 1.8347 35 1 -1.0561 4.0384 2.0038 36 1 3.2739 -1.1371 0.1118 37 1 2.5557 -2.2579 -1.9460 38 1 0.8002 -2.0353 -1.5341 39 1 2.8927 -3.8016 -0.0724 40 1 -0.0037 -4.1164 -0.7101 41 1 -1.8035 -6.9247 -0.6793 42 1 0.5411 -2.1836 1.1472 43 1 2.1880 -2.4685 1.8597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284760776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:45 Heat of formation + Delta-G solvation = 21.678440 kcal Electronic energy + Delta-G solvation = -21014.744719 eV Core-core repulsion = 17868.473608 eV Total energy + Delta-G solvation = -3146.271110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43117 -39.46155 -38.46152 -36.28861 -34.97156 -33.19249 -31.85603 -28.21453 -28.19567 -28.14537 -26.88773 -26.52946 -25.38955 -23.10008 -21.39188 -20.32062 -19.06231 -18.95065 -18.02745 -16.87755 -16.67712 -16.48361 -16.09971 -15.62253 -15.22706 -15.20794 -14.96312 -14.43223 -14.34771 -13.59041 -13.40598 -13.32997 -13.26034 -13.22718 -13.13755 -12.75930 -12.73507 -12.61289 -12.36429 -12.26607 -12.24033 -12.15502 -12.04197 -11.76198 -11.57644 -11.31894 -11.30695 -11.17876 -10.87075 -9.76028 -8.99818 -7.94513 -5.22823 0.41701 1.19314 1.49072 1.51248 1.57222 1.87269 2.37562 2.57416 2.90149 3.36821 3.65816 3.75176 3.87068 3.93717 3.95919 3.96686 4.09577 4.25463 4.25520 4.28397 4.51963 4.70164 4.73208 4.74608 4.75599 4.84361 4.84920 4.89871 4.96617 4.96955 5.02152 5.08027 5.11693 5.20439 5.35216 5.36139 5.37346 5.49576 5.59551 6.14983 6.19807 6.27540 6.86089 7.34330 8.08614 8.32978 9.28377 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033403 B = 0.002891 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.050240 B = 9684.451874 C =10129.773544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.585 5.585 3 C 0.627 3.373 4 O -0.572 6.572 5 C -0.264 4.264 6 C -0.040 4.040 7 C 0.031 3.969 8 C -0.142 4.142 9 C -0.140 4.140 10 C -0.140 4.140 11 C 0.129 3.871 12 C -0.150 4.150 13 C 0.155 3.845 14 N -0.722 5.722 15 C -0.245 4.245 16 H 0.077 0.923 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.279 1.279 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.080 0.920 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 25.082 2.055 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.314 5.314 3 C 0.417 3.583 4 O -0.454 6.454 5 C -0.266 4.266 6 C -0.042 4.042 7 C 0.031 3.969 8 C -0.199 4.199 9 C -0.197 4.197 10 C -0.197 4.197 11 C 0.025 3.975 12 C -0.190 4.190 13 C 0.045 3.955 14 N -0.359 5.359 15 C -0.377 4.377 16 H 0.095 0.905 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.203 4.203 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.265 24.856 2.069 24.944 hybrid contribution -0.143 -1.305 0.066 1.315 sum -0.408 23.551 2.135 23.651 Atomic orbital electron populations 1.21922 0.77480 1.04073 1.03123 1.47730 1.08211 1.04718 1.70733 1.15078 0.85312 0.81743 0.76119 1.90786 1.14779 1.87609 1.52195 1.20517 1.01846 0.96136 1.08143 1.23354 0.95181 0.94477 0.91210 1.18306 0.94451 0.85146 0.98992 1.21943 0.99021 0.97164 1.01784 1.21931 0.95632 1.04270 0.97903 1.21926 1.01570 1.04000 0.92230 1.22446 0.97221 0.79974 0.97840 1.23799 1.02271 0.95418 0.97496 1.21601 0.92635 0.87143 0.94162 1.42475 1.14958 1.06724 1.71778 1.19658 0.99301 0.87506 1.31266 0.90519 1.25536 0.96303 1.02141 1.02603 1.69796 1.06001 1.34832 1.51210 0.85244 0.76453 0.80075 0.78185 1.20476 1.22244 1.20501 1.24122 1.01322 0.95989 0.98836 0.91318 0.89718 0.90031 0.92544 0.88490 0.92653 0.91914 0.88630 0.92444 0.92640 0.88535 0.92061 0.86826 0.90785 0.89754 0.90059 0.79189 0.93992 0.90121 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 8.80 127.77 1.12 2.93 16 2 N -0.58 -17.19 3.09 -828.61 -2.56 -19.75 16 3 C 0.63 20.44 7.52 85.49 0.64 21.09 16 4 O -0.57 -22.51 16.57 -4.08 -0.07 -22.57 16 5 C -0.26 -7.22 11.76 30.02 0.35 -6.86 16 6 C -0.04 -0.85 11.77 31.13 0.37 -0.48 16 7 C 0.03 0.40 0.95 -53.99 -0.05 0.35 16 8 C -0.14 -1.53 8.43 71.98 0.61 -0.92 16 9 C -0.14 -1.35 8.43 71.98 0.61 -0.74 16 10 C -0.14 -1.41 8.43 71.98 0.61 -0.80 16 11 C 0.13 4.04 4.22 45.51 0.19 4.23 16 12 C -0.15 -4.94 7.36 31.12 0.23 -4.71 16 13 C 0.16 6.00 4.48 45.51 0.20 6.20 16 14 N -0.72 -35.44 5.40 -320.44 -1.73 -37.17 16 15 C -0.25 -13.39 9.97 84.03 0.84 -12.55 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 18 N -0.97 -58.12 13.06 21.65 0.28 -57.83 16 19 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 C -0.16 -5.44 7.38 31.12 0.23 -5.21 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.72 7.00 -2.39 -0.02 1.70 16 26 H 0.08 2.02 6.30 -2.39 -0.02 2.00 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 3.72 7.21 -2.39 -0.02 3.70 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.77 6.57 -2.39 -0.02 2.76 16 39 H 0.08 3.12 8.10 -2.39 -0.02 3.10 16 40 H 0.38 19.59 7.92 -92.71 -0.73 18.86 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.08 2.79 7.00 -2.39 -0.02 2.78 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -68.66 357.94 4.63 -64.03 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.26 Total: 26.83 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.41 Total: -1.18 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.01 Total: -114.75 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.66 4.63 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284760776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.712 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds