Wall clock time and date at job start Tue Mar 31 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00284 * 2 1 4 4 C 1.50696 * 120.00038 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.47088 * 94.99972 * 4 2 1 6 6 C 1.50700 * 109.47279 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00117 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99639 * 179.97438 * 8 6 5 10 10 C 1.50712 * 109.46716 * 179.97438 * 9 8 6 11 11 C 1.29454 * 117.69203 * 94.99943 * 10 9 8 12 12 C 1.50323 * 123.64590 * 181.13493 * 11 10 9 13 13 N 1.47102 * 109.11127 * 348.54347 * 12 11 10 14 14 C 1.36940 * 121.51360 * 223.15765 * 13 12 11 15 15 H 1.08004 * 119.99962 * 156.19051 * 14 13 12 16 16 C 1.38811 * 119.99874 * 336.18990 * 14 13 12 17 17 N 1.31620 * 119.99972 * 344.47015 * 16 14 13 18 18 Si 1.86793 * 120.00126 * 164.47761 * 16 14 13 19 19 H 1.48510 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47588 * 119.99663 * 18 16 14 21 21 H 1.48502 * 109.47132 * 240.00287 * 18 16 14 22 22 C 1.47346 * 117.11188 * 43.34401 * 13 12 11 23 23 C 1.49973 * 117.69226 * 274.97982 * 10 9 8 24 24 H 1.08006 * 119.99717 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00610 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47406 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47157 * 299.99637 * 3 2 1 28 28 H 1.09004 * 109.47233 * 60.00033 * 3 2 1 29 29 H 1.09002 * 109.47409 * 335.00618 * 4 2 1 30 30 H 1.08999 * 109.47955 * 215.00394 * 4 2 1 31 31 H 1.08998 * 109.47156 * 60.00651 * 5 4 2 32 32 H 1.09002 * 109.47198 * 300.00202 * 5 4 2 33 33 H 0.96998 * 120.00049 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47315 * 60.00703 * 9 8 6 35 35 H 1.08994 * 109.47482 * 299.99839 * 9 8 6 36 36 H 1.07997 * 118.17373 * 0.86395 * 11 10 9 37 37 H 1.09007 * 109.51511 * 108.65398 * 12 11 10 38 38 H 1.08999 * 109.52217 * 228.83518 * 12 11 10 39 39 H 0.97000 * 119.99856 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.77792 * 178.43066 * 22 13 12 41 41 H 1.08997 * 109.77697 * 57.62702 * 22 13 12 42 42 H 1.09000 * 109.31396 * 281.28816 * 23 10 9 43 43 H 1.08999 * 109.31466 * 40.71906 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4273 -1.6845 -1.4363 6 6 3.1803 -2.9899 -1.4358 7 8 3.4043 -3.5604 -0.3893 8 7 3.6056 -3.5229 -2.5983 9 6 4.3381 -4.7917 -2.5977 10 6 4.6964 -5.1655 -4.0131 11 6 5.8692 -4.8289 -4.4457 12 6 6.3556 -5.1119 -5.8396 13 7 5.4232 -6.0415 -6.4956 14 6 5.8724 -7.0958 -7.2453 15 1 5.2424 -7.9604 -7.3934 16 6 7.1376 -7.0531 -7.8149 17 7 7.7820 -5.9087 -7.9017 18 14 7.9254 -8.6197 -8.4585 19 1 7.0019 -9.7627 -8.2435 20 1 8.2038 -8.4739 -9.9099 21 1 9.1971 -8.8684 -7.7330 22 6 3.9831 -5.7872 -6.3149 23 6 3.6693 -5.9016 -4.8209 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 3.1351 1.1059 0.0005 27 1 1.8002 1.8766 -0.8900 28 1 1.8002 1.8767 0.8900 29 1 1.4385 -2.0853 0.4351 30 1 2.9741 -1.1987 0.5900 31 1 3.0523 -0.9044 -1.8709 32 1 1.5166 -1.7910 -2.0257 33 1 3.4268 -3.0665 -3.4353 34 1 3.7130 -5.5719 -2.1635 35 1 5.2486 -4.6854 -2.0081 36 1 6.5334 -4.3123 -3.7688 37 1 6.4048 -4.1808 -6.4042 38 1 7.3462 -5.5646 -5.7949 39 1 8.6662 -5.8790 -8.2994 40 1 3.4056 -6.5259 -6.8707 41 1 3.7384 -4.7853 -6.6676 42 1 3.6689 -6.9526 -4.5320 43 1 2.6848 -5.4765 -4.6257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284920218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:03 Heat of formation + Delta-G solvation = 1.557441 kcal Electronic energy + Delta-G solvation = -21026.687061 eV Core-core repulsion = 17879.543439 eV Total energy + Delta-G solvation = -3147.143622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.78845 -37.84814 -36.63217 -34.92130 -32.93238 -31.57008 -30.74432 -29.73616 -27.59794 -27.08276 -24.94685 -23.58381 -22.72613 -21.11544 -20.36284 -18.66046 -17.73517 -17.13990 -16.02440 -15.92599 -15.61002 -15.13956 -14.80441 -14.51313 -14.04276 -13.88178 -13.70633 -13.54859 -13.31937 -13.12879 -12.64860 -12.32582 -12.24109 -12.02987 -11.98574 -11.58930 -11.38854 -11.25473 -11.11338 -10.94379 -10.77520 -10.42686 -10.31134 -9.93393 -9.85837 -9.62126 -9.28169 -8.96084 -8.71502 -8.08652 -6.78682 -5.83213 -3.21961 1.91964 2.59419 2.66929 3.35737 3.43634 3.45651 3.56401 4.46644 4.51936 4.62972 4.80780 4.96851 5.03238 5.16136 5.25669 5.32944 5.35498 5.37368 5.41360 5.56029 5.63222 5.65547 5.73135 5.81353 5.93119 5.94200 6.04382 6.14043 6.30450 6.35762 6.44420 6.52952 6.60121 6.70250 6.83271 7.13104 7.22550 7.29322 7.59278 7.70070 7.79260 8.26431 8.34338 9.15843 9.78539 10.36606 11.27337 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041858 B = 0.002741 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.771510 B =10211.273435 C =10287.449778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.549 6.549 8 N -0.722 5.722 9 C 0.157 3.843 10 C -0.166 4.166 11 C -0.124 4.124 12 C 0.193 3.807 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.070 0.930 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.143 3.857 23 C -0.090 4.090 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 11.643 12.160 20.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.294 3.706 7 O -0.427 6.427 8 N -0.373 5.373 9 C 0.034 3.966 10 C -0.167 4.167 11 C -0.145 4.145 12 C 0.068 3.932 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.200 4.200 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.017 3.983 23 C -0.129 4.129 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.046 11.211 12.824 20.301 hybrid contribution 0.445 -0.518 -0.743 1.010 sum -10.600 10.693 12.080 19.304 Atomic orbital electron populations 1.23684 0.95298 1.01862 1.02715 1.21804 0.95434 0.95746 0.99414 1.20880 1.00283 0.94688 1.02013 1.20443 1.00819 0.94175 0.95374 1.21630 1.01280 0.95281 0.99255 1.20723 0.79288 0.86859 0.83714 1.90692 1.57396 1.63098 1.31511 1.46238 1.57448 1.24568 1.09021 1.20447 0.95927 0.84723 0.95509 1.20502 0.97390 1.04336 0.94474 1.23281 0.95416 0.95951 0.99870 1.19780 0.94966 0.93412 0.85003 1.44171 0.99141 1.31451 1.57090 1.19229 0.99941 0.93990 1.24265 0.91269 1.24993 0.99291 0.96763 0.98944 1.70014 1.14263 1.23034 1.48212 0.86177 0.79285 0.82921 0.78133 1.20293 1.21735 1.21572 1.20956 0.87056 0.98115 0.92187 1.20752 0.95391 0.99098 0.97652 0.88559 0.88425 0.91825 0.91518 0.91610 0.90599 0.90473 0.88827 0.88881 0.76406 0.91698 0.91749 0.88807 0.94101 0.88839 0.93638 0.92445 0.95944 0.91757 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 13.93 29.02 0.40 -1.11 16 2 C -0.12 -1.01 5.31 -101.07 -0.54 -1.54 16 3 C -0.12 -0.82 10.05 36.00 0.36 -0.46 16 4 C -0.07 -0.67 4.58 -27.88 -0.13 -0.80 16 5 C -0.13 -1.23 5.68 -27.88 -0.16 -1.39 16 6 C 0.51 6.56 7.83 -10.99 -0.09 6.47 16 7 O -0.55 -9.21 15.98 5.56 0.09 -9.12 16 8 N -0.72 -9.11 5.55 -61.47 -0.34 -9.45 16 9 C 0.16 2.33 5.66 -5.19 -0.03 2.30 16 10 C -0.17 -2.80 5.22 -100.98 -0.53 -3.33 16 11 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 12 C 0.19 4.49 5.25 -5.05 -0.03 4.47 16 13 N -0.60 -14.64 3.01 -173.59 -0.52 -15.16 16 14 C -0.24 -6.63 9.71 -15.06 -0.15 -6.78 16 15 H 0.07 1.84 7.88 -52.48 -0.41 1.43 16 16 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 17 N -0.91 -25.92 11.07 55.49 0.61 -25.30 16 18 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C 0.14 2.89 6.57 -3.53 -0.02 2.87 16 23 C -0.09 -1.53 5.95 -28.18 -0.17 -1.70 16 24 H 0.10 0.63 8.05 -52.48 -0.42 0.20 16 25 H 0.10 0.72 7.99 -52.49 -0.42 0.30 16 26 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 4.36 8.46 -40.82 -0.35 4.01 16 34 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 36 H 0.09 1.58 7.73 -52.49 -0.41 1.18 16 37 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.09 2.44 6.40 -51.93 -0.33 2.11 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -30.68 354.59 -8.68 -39.35 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.34 Total: 1.61 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.49 Total: -3.80 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.25 Total: -49.91 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.68 -8.68 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284920218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.909 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds