Wall clock time and date at job start Tue Mar 31 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50698 * 120.00284 * 2 1 4 4 C 1.50696 * 120.00038 * 179.97438 * 2 1 3 5 5 C 1.53004 * 109.47088 * 94.99972 * 4 2 1 6 6 C 1.50700 * 109.47279 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00117 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99639 * 179.97438 * 8 6 5 10 10 C 1.50712 * 109.46716 * 179.97438 * 9 8 6 11 11 C 1.29454 * 117.69203 * 94.99943 * 10 9 8 12 12 C 1.50323 * 123.64590 * 181.13493 * 11 10 9 13 13 N 1.47102 * 109.11127 * 348.54347 * 12 11 10 14 14 C 1.36940 * 121.51360 * 223.15765 * 13 12 11 15 15 H 1.08004 * 119.99962 * 156.19051 * 14 13 12 16 16 C 1.38811 * 119.99874 * 336.18990 * 14 13 12 17 17 N 1.31620 * 119.99972 * 344.47015 * 16 14 13 18 18 Si 1.86793 * 120.00126 * 164.47761 * 16 14 13 19 19 H 1.48510 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47588 * 119.99663 * 18 16 14 21 21 H 1.48502 * 109.47132 * 240.00287 * 18 16 14 22 22 C 1.47346 * 117.11188 * 43.34401 * 13 12 11 23 23 C 1.49973 * 117.69226 * 274.97982 * 10 9 8 24 24 H 1.08006 * 119.99717 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00610 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47406 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47157 * 299.99637 * 3 2 1 28 28 H 1.09004 * 109.47233 * 60.00033 * 3 2 1 29 29 H 1.09002 * 109.47409 * 335.00618 * 4 2 1 30 30 H 1.08999 * 109.47955 * 215.00394 * 4 2 1 31 31 H 1.08998 * 109.47156 * 60.00651 * 5 4 2 32 32 H 1.09002 * 109.47198 * 300.00202 * 5 4 2 33 33 H 0.96998 * 120.00049 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47315 * 60.00703 * 9 8 6 35 35 H 1.08994 * 109.47482 * 299.99839 * 9 8 6 36 36 H 1.07997 * 118.17373 * 0.86395 * 11 10 9 37 37 H 1.09007 * 109.51511 * 108.65398 * 12 11 10 38 38 H 1.08999 * 109.52217 * 228.83518 * 12 11 10 39 39 H 0.97000 * 119.99856 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.77792 * 178.43066 * 22 13 12 41 41 H 1.08997 * 109.77697 * 57.62702 * 22 13 12 42 42 H 1.09000 * 109.31396 * 281.28816 * 23 10 9 43 43 H 1.08999 * 109.31466 * 40.71906 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4273 -1.6845 -1.4363 6 6 3.1803 -2.9899 -1.4358 7 8 3.4043 -3.5604 -0.3893 8 7 3.6056 -3.5229 -2.5983 9 6 4.3381 -4.7917 -2.5977 10 6 4.6964 -5.1655 -4.0131 11 6 5.8692 -4.8289 -4.4457 12 6 6.3556 -5.1119 -5.8396 13 7 5.4232 -6.0415 -6.4956 14 6 5.8724 -7.0958 -7.2453 15 1 5.2424 -7.9604 -7.3934 16 6 7.1376 -7.0531 -7.8149 17 7 7.7820 -5.9087 -7.9017 18 14 7.9254 -8.6197 -8.4585 19 1 7.0019 -9.7627 -8.2435 20 1 8.2038 -8.4739 -9.9099 21 1 9.1971 -8.8684 -7.7330 22 6 3.9831 -5.7872 -6.3149 23 6 3.6693 -5.9016 -4.8209 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 3.1351 1.1059 0.0005 27 1 1.8002 1.8766 -0.8900 28 1 1.8002 1.8767 0.8900 29 1 1.4385 -2.0853 0.4351 30 1 2.9741 -1.1987 0.5900 31 1 3.0523 -0.9044 -1.8709 32 1 1.5166 -1.7910 -2.0257 33 1 3.4268 -3.0665 -3.4353 34 1 3.7130 -5.5719 -2.1635 35 1 5.2486 -4.6854 -2.0081 36 1 6.5334 -4.3123 -3.7688 37 1 6.4048 -4.1808 -6.4042 38 1 7.3462 -5.5646 -5.7949 39 1 8.6662 -5.8790 -8.2994 40 1 3.4056 -6.5259 -6.8707 41 1 3.7384 -4.7853 -6.6676 42 1 3.6689 -6.9526 -4.5320 43 1 2.6848 -5.4765 -4.6257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284920218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:02 Heat of formation + Delta-G solvation = -16.359432 kcal Electronic energy + Delta-G solvation = -21027.463995 eV Core-core repulsion = 17879.543439 eV Total energy + Delta-G solvation = -3147.920556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87247 -39.37188 -37.35210 -36.35505 -34.53183 -32.81818 -32.00067 -31.39810 -28.66098 -28.06622 -26.33858 -24.86891 -24.27162 -22.78110 -21.39269 -19.50917 -19.29194 -18.27407 -17.31526 -17.12653 -16.88934 -16.75231 -15.81307 -15.62286 -15.46132 -15.22079 -15.05826 -14.75489 -14.43790 -14.09234 -13.95371 -13.75905 -13.34893 -13.27445 -13.00674 -12.88696 -12.79736 -12.61596 -12.53281 -12.20540 -12.08969 -11.93979 -11.79359 -11.71040 -11.28605 -10.98671 -10.70041 -10.08156 -9.89492 -9.63918 -8.76152 -7.89366 -5.30327 1.16709 1.35973 1.45819 1.48095 1.57950 1.66307 2.49248 2.50587 3.28011 3.61876 3.73499 3.88005 3.96098 4.00170 4.08195 4.30515 4.38228 4.44250 4.52775 4.64011 4.70736 4.72767 4.77141 4.83766 4.88718 4.92004 4.99401 5.10084 5.12340 5.17279 5.20686 5.21932 5.37409 5.44551 5.47631 5.61035 5.76546 5.77918 6.01374 6.16198 6.33264 6.59020 7.12694 7.26557 7.82624 8.36459 9.19381 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041858 B = 0.002741 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.771510 B =10211.273435 C =10287.449778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.125 4.125 6 C 0.508 3.492 7 O -0.590 6.590 8 N -0.714 5.714 9 C 0.166 3.834 10 C -0.138 4.138 11 C -0.143 4.143 12 C 0.204 3.796 13 N -0.616 5.616 14 C -0.255 4.255 15 H 0.070 0.930 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.138 3.862 23 C -0.084 4.084 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.016 0.984 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.062 0.938 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 12.219 12.817 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.132 4.132 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.164 4.164 6 C 0.296 3.704 7 O -0.471 6.471 8 N -0.366 5.366 9 C 0.043 3.957 10 C -0.139 4.139 11 C -0.163 4.163 12 C 0.079 3.921 13 N -0.340 5.340 14 C -0.385 4.385 15 H 0.088 0.912 16 C -0.250 4.250 17 N -0.586 5.586 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.219 1.219 22 C 0.013 3.987 23 C -0.123 4.123 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.886 11.803 13.474 22.066 hybrid contribution 0.899 -0.690 -0.925 1.463 sum -11.987 11.113 12.549 20.608 Atomic orbital electron populations 1.23824 0.95208 1.02493 1.01812 1.21804 0.95627 0.95528 1.00258 1.20896 1.00023 0.94129 1.02767 1.20379 1.00158 0.94677 0.95401 1.21641 1.01894 0.93420 0.99470 1.21357 0.78637 0.87580 0.82819 1.90682 1.59021 1.64439 1.32958 1.46098 1.56949 1.23763 1.09764 1.20199 0.96084 0.85912 0.93539 1.20612 0.96316 1.01833 0.95135 1.22941 0.96795 0.98620 0.97954 1.19423 0.93569 0.91720 0.87347 1.44456 1.01202 1.31197 1.57138 1.19545 1.00183 0.94835 1.23934 0.91180 1.25733 0.99960 0.99395 0.99907 1.70166 1.14277 1.24787 1.49394 0.85202 0.78179 0.79926 0.77133 1.19169 1.21866 1.21881 1.21148 0.84618 0.98451 0.94483 1.20692 0.97124 0.99322 0.95120 0.87305 0.88486 0.91980 0.90541 0.91077 0.92003 0.91804 0.86781 0.86788 0.75018 0.91602 0.92323 0.87065 0.96677 0.92549 0.94120 0.92265 0.95283 0.91975 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 13.93 67.79 0.94 -1.60 16 2 C -0.13 -1.87 5.31 -16.48 -0.09 -1.96 16 3 C -0.12 -1.37 10.05 71.24 0.72 -0.66 16 4 C -0.07 -1.20 4.58 29.85 0.14 -1.06 16 5 C -0.12 -1.94 5.68 29.85 0.17 -1.77 16 6 C 0.51 12.03 7.83 87.66 0.69 12.72 16 7 O -0.59 -19.15 15.98 -3.04 -0.05 -19.20 16 8 N -0.71 -16.07 5.55 -466.77 -2.59 -18.66 16 9 C 0.17 4.57 5.66 85.64 0.48 5.05 16 10 C -0.14 -4.38 5.22 -15.13 -0.08 -4.46 16 11 C -0.14 -5.25 9.47 27.11 0.26 -4.99 16 12 C 0.20 9.75 5.25 85.40 0.45 10.20 16 13 N -0.62 -30.47 3.01 -703.12 -2.12 -32.59 16 14 C -0.25 -13.93 9.71 84.03 0.82 -13.11 16 15 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 16 C -0.06 -3.07 5.01 84.86 0.43 -2.65 16 17 N -0.94 -55.10 11.07 21.65 0.24 -54.86 16 18 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 22 C 0.14 5.39 6.57 86.25 0.57 5.96 16 23 C -0.08 -2.64 5.95 29.65 0.18 -2.47 16 24 H 0.11 1.13 8.05 -2.91 -0.02 1.11 16 25 H 0.10 1.25 7.99 -2.91 -0.02 1.23 16 26 H 0.06 0.71 8.00 -2.39 -0.02 0.70 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 30 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 31 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.41 7.56 8.46 -92.71 -0.78 6.78 16 34 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 35 H 0.06 1.73 7.78 -2.39 -0.02 1.71 16 36 H 0.11 3.67 7.73 -2.91 -0.02 3.65 16 37 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 3.07 6.40 -2.39 -0.02 3.06 16 39 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.06 2.26 7.96 -2.39 -0.02 2.24 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -67.24 354.59 3.36 -63.88 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.19 Total: 15.32 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.66 Total: -0.80 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.47 Total: -106.11 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.24 3.36 -63.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284920218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.521 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds