Wall clock time and date at job start Tue Mar 31 2020 00:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46655 * 115.17845 * 3 2 1 5 5 C 1.53008 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47211 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47307 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99775 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99949 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99979 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.49718 * 324.94493 * 10 9 7 12 12 C 1.53101 * 109.51951 * 204.87321 * 10 9 7 13 13 C 1.53035 * 109.50440 * 178.68297 * 12 10 9 14 14 C 1.53198 * 109.33853 * 61.35218 * 13 12 10 15 15 N 1.46931 * 108.77053 * 305.34533 * 14 13 12 16 16 C 1.36934 * 120.62746 * 233.58525 * 15 14 13 17 17 H 1.07998 * 120.00350 * 27.69174 * 16 15 14 18 18 C 1.38818 * 120.00071 * 207.68722 * 16 15 14 19 19 N 1.31620 * 119.99342 * 17.37025 * 18 16 15 20 20 Si 1.86795 * 120.00018 * 197.36882 * 18 16 15 21 21 H 1.48501 * 109.47045 * 90.00300 * 20 18 16 22 22 H 1.48505 * 109.46933 * 210.00082 * 20 18 16 23 23 H 1.48491 * 109.47501 * 330.00079 * 20 18 16 24 24 C 1.46923 * 118.73939 * 53.61014 * 15 14 13 25 25 H 4.44640 * 5.63477 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47770 * 355.17908 * 3 2 1 27 27 H 1.09003 * 109.46563 * 235.17164 * 3 2 1 28 28 H 1.09000 * 109.47237 * 59.99892 * 4 3 2 29 29 H 1.09003 * 109.47079 * 299.99003 * 4 3 2 30 30 H 1.09000 * 109.47106 * 59.99526 * 5 4 3 31 31 H 1.08999 * 109.47022 * 300.00213 * 5 4 3 32 32 H 1.09000 * 109.47312 * 59.99849 * 6 5 4 33 33 H 1.08999 * 109.47463 * 300.00140 * 6 5 4 34 34 H 0.96995 * 120.00798 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.50336 * 58.65637 * 12 10 9 36 36 H 1.08996 * 109.44892 * 298.68006 * 12 10 9 37 37 H 1.08996 * 109.50305 * 301.38333 * 13 12 10 38 38 H 1.09008 * 109.49744 * 181.31473 * 13 12 10 39 39 H 1.08992 * 109.58883 * 65.13140 * 14 13 12 40 40 H 1.08997 * 109.58537 * 185.55976 * 14 13 12 41 41 H 0.97004 * 119.99493 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58575 * 66.17336 * 24 15 14 43 43 H 1.08997 * 109.58439 * 186.60116 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.6146 -1.3055 5 6 4.6857 0.6159 -1.3053 6 6 5.1954 1.2292 -2.6110 7 6 6.7024 1.2311 -2.6105 8 8 7.3090 0.7852 -1.6596 9 7 7.3760 1.7272 -3.6671 10 6 8.8410 1.7295 -3.6665 11 1 9.2040 1.9078 -2.6542 12 6 9.3512 2.8353 -4.5943 13 6 10.8812 2.8588 -4.5680 14 6 11.4180 1.5163 -5.0744 15 7 10.8179 0.4367 -4.2785 16 6 11.6076 -0.4937 -3.6573 17 1 12.6123 -0.2354 -3.3570 18 6 11.1166 -1.7691 -3.4134 19 7 10.0542 -2.1999 -4.0600 20 14 11.9638 -2.8736 -2.1678 21 1 11.3657 -2.6562 -0.8260 22 1 11.7869 -4.2937 -2.5644 23 1 13.4121 -2.5490 -2.1226 24 6 9.3546 0.3742 -4.1624 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0231 0.0864 27 1 3.0090 0.5878 0.8436 28 1 2.7918 1.6385 -1.3919 29 1 2.7927 0.0275 -2.1492 30 1 5.0499 -0.4078 -1.2186 31 1 5.0484 1.2031 -0.4617 32 1 4.8312 2.2529 -2.6981 33 1 4.8327 0.6417 -3.4543 34 1 6.8909 2.0834 -4.4278 35 1 8.9674 3.7985 -4.2581 36 1 9.0084 2.6429 -5.6109 37 1 11.2251 3.0265 -3.5474 38 1 11.2438 3.6612 -5.2106 39 1 11.1515 1.3884 -6.1234 40 1 12.5022 1.4916 -4.9650 41 1 9.7109 -3.0910 -3.8894 42 1 8.9198 0.1532 -5.1372 43 1 9.0775 -0.4041 -3.4514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316942150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:46 Heat of formation + Delta-G solvation = 10.958229 kcal Electronic energy + Delta-G solvation = -21492.594993 eV Core-core repulsion = 18345.859019 eV Total energy + Delta-G solvation = -3146.735974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.46752 -37.39386 -36.13441 -34.05122 -33.21311 -32.62803 -30.29627 -29.91390 -28.56973 -25.25092 -25.11797 -22.27269 -21.97228 -21.08349 -19.85544 -19.20919 -18.20143 -16.74572 -16.56939 -16.01256 -15.51356 -14.90168 -14.54371 -14.36498 -14.02556 -13.77485 -13.54284 -13.22237 -12.87766 -12.83219 -12.35250 -12.30586 -12.03943 -11.70232 -11.63684 -11.28160 -10.99219 -10.72001 -10.70696 -10.68836 -10.46063 -10.34791 -10.25108 -10.21767 -9.95323 -9.91359 -9.49545 -9.25013 -8.47172 -8.39911 -6.63378 -5.72928 -3.16126 2.62818 2.66525 3.12759 3.45052 3.51752 3.52571 3.62362 4.18658 4.56519 4.83694 4.86521 4.94793 5.25256 5.27647 5.38278 5.42269 5.44269 5.56152 5.62288 5.64114 5.67046 5.72038 5.80989 5.87387 5.88000 6.10907 6.16768 6.20293 6.34964 6.36469 6.43862 6.53859 6.72663 6.79821 6.97448 7.02019 7.33810 7.43661 7.75829 7.85966 8.01507 8.50783 8.74911 9.25788 9.89814 10.44624 11.34959 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.003907 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.844392 B = 7164.941871 C = 8529.802829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C -0.017 4.017 4 C -0.113 4.113 5 C -0.106 4.106 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.534 6.534 9 N -0.724 5.724 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.142 3.858 15 N -0.589 5.589 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.167 3.833 25 H 0.215 0.785 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.391 0.609 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 9.562 1.467 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.179 4.179 3 C -0.054 4.054 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.179 4.179 7 C 0.292 3.708 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.016 3.984 15 N -0.312 5.312 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.040 3.960 25 H 0.232 0.768 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.224 0.776 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.632 9.053 2.166 16.507 hybrid contribution -0.165 -0.424 0.132 0.474 sum -13.797 8.629 2.298 16.435 Atomic orbital electron populations 1.24880 0.95966 1.01754 1.01356 1.23297 0.94704 0.99884 1.00030 1.18810 0.84339 1.02871 0.99372 1.21561 0.95678 1.01188 0.96629 1.21345 0.93443 1.02722 0.96841 1.21653 0.92784 1.02971 1.00516 1.20585 0.89816 0.77712 0.82694 1.90740 1.70320 1.45197 1.34806 1.46110 1.08019 1.63308 1.19991 1.21950 0.77573 0.98982 1.00414 0.90179 1.21680 0.97017 0.97328 0.99347 1.22004 0.94470 0.99241 1.01398 1.20955 0.96720 0.87334 0.93402 1.43980 1.01458 1.29368 1.56396 1.19157 0.97743 0.90171 1.31484 0.91602 1.25033 0.98420 0.96417 0.99458 1.70025 1.25621 1.17763 1.40900 0.86291 0.79028 0.79669 0.81788 1.21242 1.21788 1.20444 1.21092 0.83170 0.92731 0.99007 0.76805 0.89249 0.89392 0.91666 0.91490 0.90671 0.90997 0.89450 0.89096 0.77583 0.93185 0.92326 0.92153 0.92686 0.96438 0.92647 0.93700 0.96616 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.18 -1.86 13.34 -37.12 -0.50 -2.36 16 3 C -0.02 -0.16 5.70 -29.52 -0.17 -0.33 16 4 C -0.11 -1.04 5.17 -26.72 -0.14 -1.18 16 5 C -0.11 -1.22 4.50 -26.73 -0.12 -1.34 16 6 C -0.14 -1.60 5.70 -27.89 -0.16 -1.76 16 7 C 0.51 8.57 7.79 -10.99 -0.09 8.48 16 8 O -0.53 -11.76 15.65 5.55 0.09 -11.67 16 9 N -0.72 -11.62 5.08 -53.66 -0.27 -11.89 16 10 C 0.12 2.28 2.60 -67.78 -0.18 2.10 16 11 H 0.08 1.81 7.58 -51.93 -0.39 1.41 16 12 C -0.12 -1.87 5.36 -26.66 -0.14 -2.02 16 13 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 14 C 0.14 2.98 6.52 -3.70 -0.02 2.96 16 15 N -0.59 -15.16 2.99 -172.32 -0.52 -15.68 16 16 C -0.26 -7.27 9.59 -15.06 -0.14 -7.42 16 17 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 18 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 19 N -0.90 -27.04 11.19 55.49 0.62 -26.42 16 20 Si 0.90 22.72 29.59 -169.99 -5.03 17.69 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.17 4.11 4.89 -3.71 -0.02 4.10 16 25 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.39 4.83 8.60 -40.82 -0.35 4.47 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.75 6.04 -51.93 -0.31 2.44 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -34.00 355.28 -8.46 -42.47 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.36 Total: 2.72 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.35 Total: -2.57 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.17 Total: -53.99 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.00 -8.46 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316942150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.425 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds