Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46655 * 115.17845 * 3 2 1 5 5 C 1.53008 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47211 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47307 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99775 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99949 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99979 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.49718 * 324.94493 * 10 9 7 12 12 C 1.53101 * 109.51951 * 204.87321 * 10 9 7 13 13 C 1.53035 * 109.50440 * 178.68297 * 12 10 9 14 14 C 1.53198 * 109.33853 * 61.35218 * 13 12 10 15 15 N 1.46931 * 108.77053 * 305.34533 * 14 13 12 16 16 C 1.36934 * 120.62746 * 233.58525 * 15 14 13 17 17 H 1.07998 * 120.00350 * 27.69174 * 16 15 14 18 18 C 1.38818 * 120.00071 * 207.68722 * 16 15 14 19 19 N 1.31620 * 119.99342 * 17.37025 * 18 16 15 20 20 Si 1.86795 * 120.00018 * 197.36882 * 18 16 15 21 21 H 1.48501 * 109.47045 * 90.00300 * 20 18 16 22 22 H 1.48505 * 109.46933 * 210.00082 * 20 18 16 23 23 H 1.48491 * 109.47501 * 330.00079 * 20 18 16 24 24 C 1.46923 * 118.73939 * 53.61014 * 15 14 13 25 25 H 4.44640 * 5.63477 * 180.02562 * 4 1 2 26 26 H 1.08994 * 109.47770 * 355.17908 * 3 2 1 27 27 H 1.09003 * 109.46563 * 235.17164 * 3 2 1 28 28 H 1.09000 * 109.47237 * 59.99892 * 4 3 2 29 29 H 1.09003 * 109.47079 * 299.99003 * 4 3 2 30 30 H 1.09000 * 109.47106 * 59.99526 * 5 4 3 31 31 H 1.08999 * 109.47022 * 300.00213 * 5 4 3 32 32 H 1.09000 * 109.47312 * 59.99849 * 6 5 4 33 33 H 1.08999 * 109.47463 * 300.00140 * 6 5 4 34 34 H 0.96995 * 120.00798 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.50336 * 58.65637 * 12 10 9 36 36 H 1.08996 * 109.44892 * 298.68006 * 12 10 9 37 37 H 1.08996 * 109.50305 * 301.38333 * 13 12 10 38 38 H 1.09008 * 109.49744 * 181.31473 * 13 12 10 39 39 H 1.08992 * 109.58883 * 65.13140 * 14 13 12 40 40 H 1.08997 * 109.58537 * 185.55976 * 14 13 12 41 41 H 0.97004 * 119.99493 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58575 * 66.17336 * 24 15 14 43 43 H 1.08997 * 109.58439 * 186.60116 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.6146 -1.3055 5 6 4.6857 0.6159 -1.3053 6 6 5.1954 1.2292 -2.6110 7 6 6.7024 1.2311 -2.6105 8 8 7.3090 0.7852 -1.6596 9 7 7.3760 1.7272 -3.6671 10 6 8.8410 1.7295 -3.6665 11 1 9.2040 1.9078 -2.6542 12 6 9.3512 2.8353 -4.5943 13 6 10.8812 2.8588 -4.5680 14 6 11.4180 1.5163 -5.0744 15 7 10.8179 0.4367 -4.2785 16 6 11.6076 -0.4937 -3.6573 17 1 12.6123 -0.2354 -3.3570 18 6 11.1166 -1.7691 -3.4134 19 7 10.0542 -2.1999 -4.0600 20 14 11.9638 -2.8736 -2.1678 21 1 11.3657 -2.6562 -0.8260 22 1 11.7869 -4.2937 -2.5644 23 1 13.4121 -2.5490 -2.1226 24 6 9.3546 0.3742 -4.1624 25 1 -1.0501 0.0001 0.0002 26 1 3.0099 -1.0231 0.0864 27 1 3.0090 0.5878 0.8436 28 1 2.7918 1.6385 -1.3919 29 1 2.7927 0.0275 -2.1492 30 1 5.0499 -0.4078 -1.2186 31 1 5.0484 1.2031 -0.4617 32 1 4.8312 2.2529 -2.6981 33 1 4.8327 0.6417 -3.4543 34 1 6.8909 2.0834 -4.4278 35 1 8.9674 3.7985 -4.2581 36 1 9.0084 2.6429 -5.6109 37 1 11.2251 3.0265 -3.5474 38 1 11.2438 3.6612 -5.2106 39 1 11.1515 1.3884 -6.1234 40 1 12.5022 1.4916 -4.9650 41 1 9.7109 -3.0910 -3.8894 42 1 8.9198 0.1532 -5.1372 43 1 9.0775 -0.4041 -3.4514 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316942150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = -10.882658 kcal Electronic energy + Delta-G solvation = -21493.542085 eV Core-core repulsion = 18345.859019 eV Total energy + Delta-G solvation = -3147.683066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89960 -38.99966 -37.01502 -35.75516 -34.42943 -34.05716 -31.94968 -31.24780 -29.94622 -27.25334 -26.11960 -23.95851 -23.48493 -22.12002 -21.31803 -20.74823 -18.89338 -18.75617 -17.86843 -17.17726 -16.97221 -16.60015 -15.87349 -15.70973 -15.29917 -15.11514 -15.01372 -14.81988 -14.17649 -14.13109 -13.93916 -13.77682 -13.51072 -12.94711 -12.73673 -12.64237 -12.59737 -12.42521 -12.24156 -12.16761 -12.04260 -11.69715 -11.59558 -11.58864 -11.25817 -11.11785 -10.96949 -10.68224 -10.57400 -10.01826 -8.70320 -7.90338 -5.36044 1.39479 1.45169 1.50871 1.78506 1.89555 1.93971 2.32571 2.49294 3.25511 3.49439 3.72629 3.87503 3.98104 4.04854 4.06290 4.15123 4.28103 4.42186 4.45152 4.50086 4.62393 4.66040 4.77681 4.82100 4.87317 4.92370 4.94424 5.08569 5.10797 5.20187 5.22051 5.24585 5.34273 5.35132 5.44712 5.51763 5.55004 5.61219 5.80398 6.35489 6.72804 6.73468 7.10899 7.45965 7.84323 8.32984 9.14153 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.003907 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.844392 B = 7164.941871 C = 8529.802829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.217 4.217 3 C -0.020 4.020 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.127 4.127 7 C 0.497 3.503 8 O -0.594 6.594 9 N -0.712 5.712 10 C 0.130 3.870 11 H 0.046 0.954 12 C -0.106 4.106 13 C -0.123 4.123 14 C 0.135 3.865 15 N -0.611 5.611 16 C -0.265 4.265 17 H 0.068 0.932 18 C -0.052 4.052 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.295 1.295 22 H -0.290 1.290 23 H -0.262 1.262 24 C 0.178 3.822 25 H 0.244 0.756 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.022 0.978 40 H 0.054 0.946 41 H 0.247 0.753 42 H -0.001 1.001 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.379 11.908 0.601 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.217 4.217 3 C -0.056 4.056 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.166 4.166 7 C 0.285 3.715 8 O -0.475 6.475 9 N -0.364 5.364 10 C 0.023 3.977 11 H 0.064 0.936 12 C -0.144 4.144 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.335 5.335 16 C -0.395 4.395 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.222 1.222 22 H -0.216 1.216 23 H -0.186 1.186 24 C 0.051 3.949 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.970 11.450 1.252 18.888 hybrid contribution 0.243 -1.137 0.380 1.224 sum -14.727 10.313 1.632 18.053 Atomic orbital electron populations 1.25698 0.96877 1.00346 0.99956 1.23652 0.95411 1.01241 1.01393 1.18807 0.84384 1.02757 0.99699 1.21437 0.93427 1.02162 0.96704 1.21287 0.95205 1.00877 0.96726 1.21694 0.88181 1.05711 1.01055 1.21651 0.92100 0.76037 0.81694 1.90718 1.71995 1.47648 1.37112 1.45956 1.06687 1.62909 1.20833 1.21455 0.79658 0.97384 0.99188 0.93564 1.21643 0.96301 0.97260 0.99187 1.21907 0.95039 0.97755 1.01485 1.21185 0.96775 0.87944 0.93098 1.44279 1.01793 1.30093 1.57370 1.19506 0.98085 0.90784 1.31117 0.91474 1.25796 0.99500 0.98024 1.01406 1.70174 1.27199 1.17723 1.42461 0.85339 0.78882 0.77884 0.78862 1.22216 1.21650 1.18607 1.20805 0.83139 0.94286 0.96638 0.73937 0.89765 0.89032 0.90119 0.91044 0.93458 0.92048 0.85506 0.87036 0.74884 0.89560 0.90686 0.93185 0.88436 0.96001 0.92734 0.94411 0.98273 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.50 19.25 74.32 1.43 -2.07 16 2 C -0.22 -4.27 13.34 31.12 0.42 -3.86 16 3 C -0.02 -0.36 5.70 28.79 0.16 -0.20 16 4 C -0.10 -1.70 5.17 30.60 0.16 -1.54 16 5 C -0.10 -2.35 4.50 30.59 0.14 -2.21 16 6 C -0.13 -2.69 5.70 29.84 0.17 -2.52 16 7 C 0.50 16.81 7.79 87.66 0.68 17.49 16 8 O -0.59 -27.45 15.65 -3.04 -0.05 -27.49 16 9 N -0.71 -22.10 5.08 -442.06 -2.25 -24.35 16 10 C 0.13 5.07 2.60 45.09 0.12 5.19 16 11 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.11 -3.10 5.36 30.64 0.16 -2.93 16 13 C -0.12 -3.84 6.08 30.67 0.19 -3.66 16 14 C 0.13 5.53 6.52 86.36 0.56 6.09 16 15 N -0.61 -32.11 2.99 -699.09 -2.09 -34.20 16 16 C -0.26 -15.43 9.59 84.04 0.81 -14.63 16 17 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 18 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 19 N -0.93 -58.39 11.19 21.65 0.24 -58.15 16 20 Si 0.96 48.26 29.59 68.60 2.03 50.29 16 21 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.18 9.08 4.89 86.36 0.42 9.50 16 25 H 0.24 2.09 7.80 -4.41 -0.03 2.06 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 31 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.41 9.03 8.60 -92.71 -0.80 8.23 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 41 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.04 2.61 6.04 -2.39 -0.01 2.59 16 Total: -1.00 -79.51 355.28 3.89 -75.62 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.17 Total: 16.31 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.83 Total: 1.98 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -4.10 Total: -116.70 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -79.51 3.89 -75.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316942150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.734 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds