Wall clock time and date at job start Tue Mar 31 2020 00:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47089 * 2 1 4 4 C 1.47197 * 109.47380 * 120.00115 * 2 1 3 5 5 C 2.64598 * 109.47283 * 120.00321 * 2 1 3 6 6 C 4.07794 * 109.47259 * 120.00365 * 2 1 3 7 7 O 1.21612 * 120.00267 * 233.78806 * 6 5 4 8 8 N 1.34776 * 119.99902 * 53.78590 * 6 5 4 9 9 C 1.46922 * 120.63398 * 354.32134 * 8 6 5 10 10 C 1.53190 * 108.78117 * 233.63160 * 9 8 6 11 11 C 1.53039 * 109.31001 * 305.36391 * 10 9 8 12 12 C 1.53046 * 109.52850 * 61.37311 * 11 10 9 13 13 C 1.46926 * 120.63147 * 174.34402 * 8 6 5 14 14 H 1.08997 * 109.58752 * 246.15804 * 13 8 6 15 15 C 1.52999 * 109.58743 * 6.44078 * 13 8 6 16 16 N 1.46505 * 109.47076 * 292.97390 * 15 13 8 17 17 C 1.36937 * 119.99896 * 185.82147 * 16 15 13 18 18 H 1.07998 * 120.00219 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99817 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47273 * 59.99672 * 21 19 17 23 23 H 1.48500 * 109.47367 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47247 * 299.99792 * 21 19 17 25 25 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47046 * 299.99598 * 1 2 3 27 27 H 1.08998 * 109.47448 * 59.99691 * 1 2 3 28 28 H 1.09003 * 109.47046 * 240.00402 * 2 1 3 29 29 H 1.09002 * 109.47048 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47746 * 300.00417 * 3 2 1 31 31 H 1.09003 * 109.46849 * 60.00281 * 3 2 1 32 32 H 1.09001 * 109.59198 * 113.84129 * 9 8 6 33 33 H 1.09006 * 109.70346 * 353.48677 * 9 8 6 34 34 H 1.08997 * 109.50345 * 185.40901 * 10 9 8 35 35 H 1.09008 * 109.52347 * 65.32990 * 10 9 8 36 36 H 1.09007 * 109.46031 * 181.38067 * 11 10 9 37 37 H 1.08995 * 109.46184 * 301.35288 * 11 10 9 38 38 H 1.08992 * 109.49768 * 58.57582 * 12 11 10 39 39 H 1.08994 * 109.49642 * 178.68033 * 12 11 10 40 40 H 1.09001 * 109.47261 * 52.97378 * 15 13 8 41 41 H 1.09005 * 109.47451 * 172.97320 * 15 13 8 42 42 H 0.96996 * 119.99413 * 5.81592 * 16 15 13 43 43 H 0.97004 * 119.99925 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4120 -1.2474 2.1603 6 6 2.8894 -1.9226 3.3295 7 8 3.1996 -1.2836 4.3166 8 7 2.9948 -3.2662 3.3359 9 6 2.5088 -4.0607 2.1996 10 6 1.5424 -5.1284 2.7219 11 6 2.2358 -5.9491 3.8117 12 6 2.6187 -5.0329 4.9764 13 6 3.5976 -3.9643 4.4796 14 1 4.5290 -4.4377 4.1691 15 6 3.8804 -2.9626 5.6010 16 7 4.9293 -2.0337 5.1730 17 6 5.4358 -1.1186 6.0568 18 1 5.0624 -1.0819 7.0695 19 6 6.4300 -0.2388 5.6515 20 7 6.8862 -0.2845 4.4177 21 14 7.1215 1.0090 6.8573 22 1 7.7214 0.2986 8.0153 23 1 8.1639 1.8240 6.1832 24 1 6.0295 1.8961 7.3324 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.3514 -4.5420 1.7032 33 1 1.9901 -3.4126 1.4931 34 1 1.2488 -5.7853 1.9031 35 1 0.6570 -4.6467 3.1371 36 1 1.5586 -6.7254 4.1680 37 1 3.1343 -6.4108 3.4023 38 1 1.7236 -4.5517 5.3702 39 1 3.0915 -5.6218 5.7623 40 1 2.9716 -2.4050 5.8278 41 1 4.2101 -3.4977 6.4916 42 1 5.2650 -2.0670 4.2635 43 1 7.5813 0.3300 4.1345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317184143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:49 Heat of formation + Delta-G solvation = 55.570402 kcal Electronic energy + Delta-G solvation = -22374.701011 eV Core-core repulsion = 19229.899566 eV Total energy + Delta-G solvation = -3144.801445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00891 -36.88331 -36.24993 -34.48271 -32.67115 -32.03794 -31.05681 -29.78787 -27.24930 -26.27153 -24.49676 -23.59964 -22.65868 -21.69684 -20.68069 -19.70854 -17.53680 -16.63315 -15.95109 -15.55816 -14.88325 -14.65102 -14.47587 -14.30823 -14.07455 -13.70568 -13.49099 -13.40125 -12.95227 -12.83031 -12.31124 -12.22456 -12.16592 -11.91000 -11.66213 -11.44245 -11.38964 -10.99830 -10.91300 -10.71893 -10.66775 -10.55155 -10.32797 -9.97584 -9.89492 -9.81836 -9.49243 -8.70380 -8.51552 -8.04732 -6.47586 -5.54405 -2.73071 2.21005 2.75734 3.44324 3.57050 3.60246 3.62123 4.18001 4.37320 4.75986 4.84507 4.92907 4.93964 4.97768 5.09168 5.17356 5.22087 5.45982 5.51222 5.53227 5.59372 5.66406 5.72943 5.80409 5.81498 5.86720 5.87812 5.93568 6.00919 6.10326 6.11898 6.12585 6.20047 6.23110 6.38569 6.55188 6.68973 6.96293 7.28936 7.71273 7.88151 7.96844 8.63388 8.94195 9.74380 10.33276 10.67293 11.69255 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.006783 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.372247 B = 4126.734327 C = 6273.463583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.018 3.982 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.181 4.181 6 C 0.571 3.429 7 O -0.421 6.421 8 N -0.609 5.609 9 C 0.114 3.886 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.127 4.127 13 C 0.145 3.855 14 H 0.071 0.929 15 C 0.158 3.842 16 N -0.690 5.690 17 C -0.212 4.212 18 H 0.066 0.934 19 C -0.020 4.020 20 N -0.936 5.936 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.289 1.289 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.020 0.980 42 H 0.380 0.620 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -8.633 -10.087 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.184 4.184 6 C 0.357 3.643 7 O -0.289 6.289 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.166 4.166 13 C 0.042 3.958 14 H 0.089 0.911 15 C 0.030 3.970 16 N -0.333 5.333 17 C -0.344 4.344 18 H 0.084 0.916 19 C -0.215 4.215 20 N -0.587 5.587 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.216 1.216 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.214 0.786 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.771 -8.137 -9.328 18.517 hybrid contribution 0.560 0.733 0.141 0.933 sum -13.211 -7.404 -9.186 17.713 Atomic orbital electron populations 1.21823 0.93472 1.02333 1.02451 1.18309 0.95594 0.95128 0.90977 1.21844 1.02113 0.94167 1.02305 1.22383 0.97124 0.98751 0.95197 1.21306 1.01756 1.00238 0.95108 1.14889 0.82332 0.81673 0.85418 1.91293 1.40483 1.65878 1.31212 1.47570 1.62925 1.04738 1.19466 1.21539 0.97159 0.93534 0.88687 1.21913 0.98741 0.97632 0.98859 1.21502 1.00396 0.97624 0.95986 1.21917 0.99970 0.96930 0.97814 1.21500 0.94621 0.93064 0.86613 0.91125 1.20933 0.93873 0.89679 0.92489 1.42363 1.40624 1.37693 1.12623 1.19136 1.13157 1.09285 0.92829 0.91576 1.24641 1.00379 1.00094 0.96391 1.69653 1.32181 1.40595 1.16223 0.86294 0.78327 0.81644 0.80150 1.21558 1.21942 1.21575 0.92292 0.92120 0.91651 0.88873 0.91811 0.91760 0.92016 0.91931 0.90350 0.91223 0.91663 0.91993 0.91822 0.91475 0.90753 0.94276 0.96204 0.78575 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.15 37.16 0.34 -0.99 16 2 C 0.02 0.21 3.30 -93.41 -0.31 -0.10 16 3 C -0.15 -1.67 9.15 37.16 0.34 -1.33 16 4 C -0.13 -2.14 12.52 -37.12 -0.46 -2.60 16 5 C -0.18 -3.48 11.59 -38.84 -0.45 -3.93 16 6 C 0.57 12.23 6.81 -14.34 -0.10 12.13 16 7 O -0.42 -11.02 10.74 5.27 0.06 -10.96 16 8 N -0.61 -10.67 2.97 -168.08 -0.50 -11.17 16 9 C 0.11 1.51 6.30 -3.71 -0.02 1.48 16 10 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 11 C -0.12 -1.25 5.88 -26.69 -0.16 -1.40 16 12 C -0.13 -1.68 5.38 -26.60 -0.14 -1.83 16 13 C 0.14 2.53 2.94 -67.60 -0.20 2.33 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.16 3.50 4.87 -4.04 -0.02 3.48 16 16 N -0.69 -19.03 3.15 -59.90 -0.19 -19.21 16 17 C -0.21 -6.43 9.68 -15.06 -0.15 -6.58 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 19 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 20 N -0.94 -30.33 13.06 55.49 0.72 -29.60 16 21 Si 0.90 24.09 29.55 -169.99 -5.02 19.06 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.00 6.39 -51.93 -0.33 0.67 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.94 6.49 -51.93 -0.34 0.61 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.38 11.18 6.82 -40.82 -0.28 10.90 16 43 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -35.56 346.07 -8.56 -44.12 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.26 Total: 4.18 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.59 Total: -1.63 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.04 Total: -59.99 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.06 Total: -10.96 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.56 -8.56 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317184143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.686 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds