Wall clock time and date at job start Tue Mar 31 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47089 * 2 1 4 4 C 1.47197 * 109.47380 * 120.00115 * 2 1 3 5 5 C 2.64598 * 109.47283 * 120.00321 * 2 1 3 6 6 C 4.07794 * 109.47259 * 120.00365 * 2 1 3 7 7 O 1.21612 * 120.00267 * 233.78806 * 6 5 4 8 8 N 1.34776 * 119.99902 * 53.78590 * 6 5 4 9 9 C 1.46922 * 120.63398 * 354.32134 * 8 6 5 10 10 C 1.53190 * 108.78117 * 233.63160 * 9 8 6 11 11 C 1.53039 * 109.31001 * 305.36391 * 10 9 8 12 12 C 1.53046 * 109.52850 * 61.37311 * 11 10 9 13 13 C 1.46926 * 120.63147 * 174.34402 * 8 6 5 14 14 H 1.08997 * 109.58752 * 246.15804 * 13 8 6 15 15 C 1.52999 * 109.58743 * 6.44078 * 13 8 6 16 16 N 1.46505 * 109.47076 * 292.97390 * 15 13 8 17 17 C 1.36937 * 119.99896 * 185.82147 * 16 15 13 18 18 H 1.07998 * 120.00219 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99817 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00017 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47273 * 59.99672 * 21 19 17 23 23 H 1.48500 * 109.47367 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47247 * 299.99792 * 21 19 17 25 25 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47046 * 299.99598 * 1 2 3 27 27 H 1.08998 * 109.47448 * 59.99691 * 1 2 3 28 28 H 1.09003 * 109.47046 * 240.00402 * 2 1 3 29 29 H 1.09002 * 109.47048 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47746 * 300.00417 * 3 2 1 31 31 H 1.09003 * 109.46849 * 60.00281 * 3 2 1 32 32 H 1.09001 * 109.59198 * 113.84129 * 9 8 6 33 33 H 1.09006 * 109.70346 * 353.48677 * 9 8 6 34 34 H 1.08997 * 109.50345 * 185.40901 * 10 9 8 35 35 H 1.09008 * 109.52347 * 65.32990 * 10 9 8 36 36 H 1.09007 * 109.46031 * 181.38067 * 11 10 9 37 37 H 1.08995 * 109.46184 * 301.35288 * 11 10 9 38 38 H 1.08992 * 109.49768 * 58.57582 * 12 11 10 39 39 H 1.08994 * 109.49642 * 178.68033 * 12 11 10 40 40 H 1.09001 * 109.47261 * 52.97378 * 15 13 8 41 41 H 1.09005 * 109.47451 * 172.97320 * 15 13 8 42 42 H 0.96996 * 119.99413 * 5.81592 * 16 15 13 43 43 H 0.97004 * 119.99925 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2018 5 6 2.4120 -1.2474 2.1603 6 6 2.8894 -1.9226 3.3295 7 8 3.1996 -1.2836 4.3166 8 7 2.9948 -3.2662 3.3359 9 6 2.5088 -4.0607 2.1996 10 6 1.5424 -5.1284 2.7219 11 6 2.2358 -5.9491 3.8117 12 6 2.6187 -5.0329 4.9764 13 6 3.5976 -3.9643 4.4796 14 1 4.5290 -4.4377 4.1691 15 6 3.8804 -2.9626 5.6010 16 7 4.9293 -2.0337 5.1730 17 6 5.4358 -1.1186 6.0568 18 1 5.0624 -1.0819 7.0695 19 6 6.4300 -0.2388 5.6515 20 7 6.8862 -0.2845 4.4177 21 14 7.1215 1.0090 6.8573 22 1 7.7214 0.2986 8.0153 23 1 8.1639 1.8240 6.1832 24 1 6.0295 1.8961 7.3324 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.3514 -4.5420 1.7032 33 1 1.9901 -3.4126 1.4931 34 1 1.2488 -5.7853 1.9031 35 1 0.6570 -4.6467 3.1371 36 1 1.5586 -6.7254 4.1680 37 1 3.1343 -6.4108 3.4023 38 1 1.7236 -4.5517 5.3702 39 1 3.0915 -5.6218 5.7623 40 1 2.9716 -2.4050 5.8278 41 1 4.2101 -3.4977 6.4916 42 1 5.2650 -2.0670 4.2635 43 1 7.5813 0.3300 4.1345 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317184143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:48 Heat of formation + Delta-G solvation = 32.791055 kcal Electronic energy + Delta-G solvation = -22375.688797 eV Core-core repulsion = 19229.899566 eV Total energy + Delta-G solvation = -3145.789231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50213 -38.25439 -37.34276 -36.37792 -34.12824 -33.67523 -32.40465 -31.54749 -28.07389 -27.85531 -26.16447 -24.82732 -24.36617 -23.00345 -21.99361 -20.92167 -19.39351 -18.32194 -17.20827 -16.92697 -16.73280 -16.10573 -15.72520 -15.48489 -15.45913 -15.21021 -15.03360 -14.70069 -14.39613 -14.13468 -13.79618 -13.61902 -13.17156 -13.11967 -12.88198 -12.79401 -12.74958 -12.41693 -12.32517 -12.20339 -12.11300 -11.90090 -11.74966 -11.53507 -11.43561 -11.24332 -11.17164 -10.84334 -10.23143 -9.56556 -8.64616 -7.87649 -5.06708 0.74206 1.37088 1.40474 1.46581 1.51572 2.04474 2.58722 2.69188 3.15132 3.45945 3.77094 3.81280 3.92853 4.05323 4.10152 4.18012 4.20706 4.30512 4.35474 4.44338 4.53250 4.58130 4.71996 4.76212 4.84754 4.90741 4.94470 4.97682 5.02889 5.07695 5.11634 5.13524 5.22643 5.29062 5.31051 5.34074 5.47374 5.50673 5.76922 6.32085 6.33356 6.49263 7.34991 7.39861 8.17170 8.40034 9.37151 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.006783 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.372247 B = 4126.734327 C = 6273.463583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.148 4.148 4 C -0.084 4.084 5 C -0.254 4.254 6 C 0.575 3.425 7 O -0.492 6.492 8 N -0.603 5.603 9 C 0.106 3.894 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.119 4.119 13 C 0.147 3.853 14 H 0.068 0.932 15 C 0.160 3.840 16 N -0.702 5.702 17 C -0.217 4.217 18 H 0.065 0.935 19 C -0.087 4.087 20 N -0.975 5.975 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.293 1.293 24 H -0.288 1.288 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.018 0.982 41 H 0.025 0.975 42 H 0.366 0.634 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -10.089 -11.929 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.006 4.006 3 C -0.205 4.205 4 C -0.086 4.086 5 C -0.257 4.257 6 C 0.362 3.638 7 O -0.365 6.365 8 N -0.339 5.339 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.150 4.150 12 C -0.158 4.158 13 C 0.044 3.956 14 H 0.086 0.914 15 C 0.033 3.967 16 N -0.343 5.343 17 C -0.350 4.350 18 H 0.083 0.917 19 C -0.277 4.277 20 N -0.628 5.628 21 Si 0.801 3.199 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.215 1.215 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.198 0.802 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.689 -9.674 -11.175 21.555 hybrid contribution 0.964 1.158 0.551 1.604 sum -14.725 -8.517 -10.625 20.056 Atomic orbital electron populations 1.21819 0.91106 1.03201 1.03428 1.18794 0.97411 0.94827 0.89597 1.21876 1.00928 0.94242 1.03422 1.23520 0.93782 0.96387 0.94922 1.21252 1.04937 1.02979 0.96494 1.15371 0.80376 0.82791 0.85262 1.91253 1.44470 1.67301 1.33490 1.47759 1.61498 1.04045 1.20578 1.21894 0.98341 0.93897 0.87441 1.21897 0.97458 0.97011 0.99946 1.21514 1.01418 0.97409 0.94639 1.21884 0.98400 0.95998 0.99502 1.21485 0.96105 0.92648 0.85345 0.91376 1.20968 0.91548 0.89539 0.94610 1.42415 1.41910 1.38456 1.11514 1.19507 1.12673 1.09660 0.93176 0.91708 1.25463 1.01461 1.02494 0.98325 1.69832 1.33089 1.41708 1.18169 0.85218 0.77345 0.79048 0.78258 1.19933 1.21958 1.21493 0.91535 0.93446 0.88423 0.85767 0.93728 0.87975 0.93628 0.90768 0.90037 0.87744 0.92225 0.89201 0.90965 0.92119 0.89255 0.96463 0.95688 0.80245 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.15 71.98 0.66 -1.46 16 2 C 0.01 0.23 3.30 -12.60 -0.04 0.19 16 3 C -0.15 -3.09 9.15 71.98 0.66 -2.43 16 4 C -0.08 -2.67 12.52 31.12 0.39 -2.28 16 5 C -0.25 -10.10 11.59 30.01 0.35 -9.75 16 6 C 0.57 25.99 6.81 85.49 0.58 26.58 16 7 O -0.49 -27.65 10.74 -4.07 -0.04 -27.70 16 8 N -0.60 -21.57 2.97 -803.92 -2.39 -23.96 16 9 C 0.11 2.64 6.30 86.36 0.54 3.18 16 10 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 11 C -0.11 -2.00 5.88 30.62 0.18 -1.82 16 12 C -0.12 -2.97 5.38 30.68 0.16 -2.81 16 13 C 0.15 5.22 2.94 44.98 0.13 5.36 16 14 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 15 C 0.16 7.45 4.87 86.38 0.42 7.87 16 16 N -0.70 -40.91 3.15 -343.44 -1.08 -41.99 16 17 C -0.22 -13.79 9.68 84.03 0.81 -12.98 16 18 H 0.06 4.00 7.83 -2.91 -0.02 3.97 16 19 C -0.09 -5.56 5.50 84.86 0.47 -5.09 16 20 N -0.98 -65.94 13.06 21.65 0.28 -65.66 16 21 Si 0.97 51.30 29.55 68.60 2.03 53.33 16 22 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 24 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.98 6.39 -2.38 -0.02 1.97 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.02 0.90 6.49 -2.39 -0.02 0.88 16 41 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.37 22.86 6.82 -92.71 -0.63 22.23 16 43 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -84.00 346.07 4.65 -79.35 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.35 Total: 24.12 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.51 Total: 2.50 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -3.19 Total: -131.60 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.03 Total: 53.33 kcal Total: -84.00 4.65 -79.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317184143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.142 kcal (2) G-P(sol) polarization free energy of solvation -84.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds