Wall clock time and date at job start Tue Mar 31 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47041 * 296.70878 * 4 3 2 6 6 C 1.53000 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47118 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99734 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65008 * 0.02562 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.92146 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46503 * 109.46859 * 66.45811 * 14 12 11 16 16 C 1.36934 * 120.00182 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46940 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47489 * 119.99945 * 20 18 16 23 23 H 1.48500 * 109.47524 * 240.00494 * 20 18 16 24 24 C 1.47425 * 125.64110 * 180.02562 * 9 7 6 25 25 H 1.09003 * 109.47119 * 63.29457 * 1 2 3 26 26 H 1.09000 * 109.47135 * 183.28897 * 1 2 3 27 27 H 1.08998 * 109.47548 * 303.29144 * 1 2 3 28 28 H 1.09003 * 109.46510 * 176.70418 * 4 3 2 29 29 H 1.09001 * 109.46909 * 56.71515 * 4 3 2 30 30 H 1.09000 * 109.46972 * 60.00125 * 5 4 3 31 31 H 1.08999 * 109.47100 * 299.99832 * 5 4 3 32 32 H 1.09007 * 109.46721 * 60.00323 * 6 5 4 33 33 H 1.08992 * 109.47575 * 300.00446 * 6 5 4 34 34 H 1.09000 * 109.88350 * 59.50355 * 10 9 7 35 35 H 1.08998 * 109.88602 * 298.34021 * 10 9 7 36 36 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 37 37 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 38 38 H 1.08996 * 109.47362 * 186.45309 * 14 12 11 39 39 H 1.08999 * 109.47432 * 306.46119 * 14 12 11 40 40 H 0.97007 * 120.00042 * 359.97438 * 15 14 12 41 41 H 0.97000 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36633 * 85.31776 * 24 9 7 43 43 H 1.08996 * 110.37033 * 322.98156 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6286 -0.6460 1.2885 6 6 6.1586 -0.6452 1.2882 7 6 6.6615 -1.2828 2.5578 8 8 5.8738 -1.6974 3.3814 9 7 7.9867 -1.3922 2.7777 10 6 9.0470 -0.9336 1.8684 11 6 10.3981 -1.2427 2.5470 12 6 10.0181 -1.3432 4.0480 13 1 9.9678 -0.3551 4.5053 14 6 10.9969 -2.2452 4.8024 15 7 12.3199 -1.6163 4.8280 16 6 13.3644 -2.2441 5.4524 17 1 13.2131 -3.2031 5.9256 18 6 14.6180 -1.6485 5.4762 19 7 14.8026 -0.4801 4.8990 20 14 16.0431 -2.5052 6.3273 21 1 15.5776 -3.7970 6.8929 22 1 17.1272 -2.7579 5.3443 23 1 16.5577 -1.6424 7.4208 24 6 8.6130 -1.9915 3.9702 25 1 -0.3633 0.4618 -0.9181 26 1 -0.3633 -1.0260 0.0590 27 1 -0.3634 0.5641 0.8590 28 1 4.4804 1.0282 -0.0591 29 1 4.4818 -0.5618 -0.8591 30 1 4.2662 -1.6723 1.3475 31 1 4.2648 -0.0823 2.1475 32 1 6.5213 0.3810 1.2291 33 1 6.5221 -1.2091 0.4293 34 1 8.9532 0.1393 1.7008 35 1 8.9781 -1.4664 0.9200 36 1 11.1069 -0.4313 2.3823 37 1 10.8057 -2.1878 2.1883 38 1 10.6440 -2.3906 5.8233 39 1 11.0630 -3.2101 4.2998 40 1 12.4560 -0.7555 4.4020 41 1 15.6785 -0.0637 4.9160 42 1 8.6995 -3.0715 3.8509 43 1 8.0351 -1.7526 4.8629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317331050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:19 Heat of formation + Delta-G solvation = 1.858420 kcal Electronic energy + Delta-G solvation = -20409.332132 eV Core-core repulsion = 17262.201561 eV Total energy + Delta-G solvation = -3147.130571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09246 -37.80677 -35.89475 -34.69422 -33.54251 -32.25786 -30.41645 -29.81175 -28.96285 -26.94777 -25.21773 -23.28694 -22.45680 -21.89722 -20.03032 -19.13755 -17.44891 -17.06796 -16.56580 -16.42909 -15.82910 -15.08606 -14.68664 -14.33995 -14.16420 -13.91779 -13.77766 -13.65973 -13.52170 -13.11997 -12.93012 -12.88678 -12.50442 -12.40138 -12.25581 -11.78773 -11.62907 -11.19783 -11.16267 -10.88781 -10.67826 -10.50885 -10.38801 -10.05951 -10.03224 -9.94480 -9.81781 -9.70293 -8.90536 -8.62099 -6.94933 -5.79412 -3.07963 2.42830 2.47811 2.61490 2.99156 3.42028 3.48134 3.50062 3.95942 4.36380 4.56360 4.71917 4.73843 4.76353 4.86302 5.04980 5.13093 5.15959 5.22498 5.28117 5.29882 5.31690 5.34969 5.37855 5.48902 5.55019 5.64173 5.68838 5.86258 5.89353 6.01847 6.03082 6.04265 6.10834 6.22433 6.37664 6.44067 6.70461 6.82855 7.41348 7.53160 7.68790 8.14579 8.39529 9.51143 10.07980 10.42987 11.43546 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.066940 B = 0.002217 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.182365 B =12629.280458 C =12895.372013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.199 4.199 3 C -0.184 4.184 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.525 3.475 8 O -0.546 6.546 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.106 4.106 13 H 0.084 0.916 14 C 0.164 3.836 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.112 3.888 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.782 1.886 -12.462 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.199 4.199 3 C -0.184 4.184 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.176 4.176 7 C 0.314 3.686 8 O -0.424 6.424 9 N -0.352 5.352 10 C -0.024 4.024 11 C -0.159 4.159 12 C -0.125 4.125 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.011 4.011 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.195 1.540 -11.947 25.253 hybrid contribution 1.043 -0.085 0.262 1.079 sum -21.152 1.455 -11.685 24.209 Atomic orbital electron populations 1.18839 0.84763 1.03006 1.02903 1.22424 0.93990 1.01911 1.01567 1.22328 0.93658 1.01137 1.01246 1.18709 0.84469 1.02205 0.98956 1.21287 0.92960 1.02465 0.96992 1.21655 0.97121 1.02554 0.96283 1.20311 0.80541 0.79213 0.88505 1.90704 1.54456 1.49779 1.47472 1.48601 1.05030 1.59881 1.21680 1.22152 0.87664 0.99386 0.93204 1.22639 0.94767 1.03704 0.94793 1.22568 0.93356 1.00630 0.95954 0.89793 1.20550 0.85634 0.93881 0.96349 1.42307 1.04237 1.23685 1.67280 1.19285 0.88461 1.01874 1.27405 0.91090 1.24733 0.97713 0.97141 1.01398 1.69664 1.22684 1.16757 1.49135 0.86113 0.82682 0.78569 0.78804 1.20548 1.21878 1.21870 1.22262 0.93151 0.97621 0.88048 0.90344 0.90265 0.90250 0.89509 0.89540 0.90798 0.90761 0.88673 0.88719 0.91422 0.91507 0.89464 0.90178 0.95997 0.95974 0.78244 0.93573 0.91246 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.20 -1.96 14.13 -37.12 -0.52 -2.49 16 3 C -0.18 -1.88 13.34 -37.12 -0.50 -2.37 16 4 C -0.01 -0.05 5.70 -29.52 -0.17 -0.22 16 5 C -0.10 -0.93 4.46 -26.73 -0.12 -1.05 16 6 C -0.14 -1.19 4.89 -27.88 -0.14 -1.32 16 7 C 0.53 6.94 7.85 -10.98 -0.09 6.85 16 8 O -0.55 -9.33 16.24 5.56 0.09 -9.24 16 9 N -0.62 -7.97 3.33 -170.51 -0.57 -8.54 16 10 C 0.10 1.06 6.49 -3.07 -0.02 1.04 16 11 C -0.12 -1.63 6.13 -24.90 -0.15 -1.79 16 12 C -0.11 -1.62 3.11 -88.46 -0.27 -1.90 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 15 N -0.73 -17.91 5.45 -59.91 -0.33 -18.23 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 20 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 C 0.11 1.60 6.38 -2.51 -0.02 1.58 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.38 9.78 7.53 -40.82 -0.31 9.47 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 43 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -33.43 362.70 -8.98 -42.41 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.44 Total: 3.60 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.91 Total: -5.64 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.17 Total: -53.77 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -8.98 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317331050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.272 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds