Wall clock time and date at job start Tue Mar 31 2020 00:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47041 * 296.70878 * 4 3 2 6 6 C 1.53000 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47118 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99734 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65008 * 0.02562 * 9 7 6 11 11 C 1.54325 * 107.27065 * 178.92146 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 C 1.52996 * 111.00814 * 153.57356 * 12 11 10 15 15 N 1.46503 * 109.46859 * 66.45811 * 14 12 11 16 16 C 1.36934 * 120.00182 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99738 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46940 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47489 * 119.99945 * 20 18 16 23 23 H 1.48500 * 109.47524 * 240.00494 * 20 18 16 24 24 C 1.47425 * 125.64110 * 180.02562 * 9 7 6 25 25 H 1.09003 * 109.47119 * 63.29457 * 1 2 3 26 26 H 1.09000 * 109.47135 * 183.28897 * 1 2 3 27 27 H 1.08998 * 109.47548 * 303.29144 * 1 2 3 28 28 H 1.09003 * 109.46510 * 176.70418 * 4 3 2 29 29 H 1.09001 * 109.46909 * 56.71515 * 4 3 2 30 30 H 1.09000 * 109.46972 * 60.00125 * 5 4 3 31 31 H 1.08999 * 109.47100 * 299.99832 * 5 4 3 32 32 H 1.09007 * 109.46721 * 60.00323 * 6 5 4 33 33 H 1.08992 * 109.47575 * 300.00446 * 6 5 4 34 34 H 1.09000 * 109.88350 * 59.50355 * 10 9 7 35 35 H 1.08998 * 109.88602 * 298.34021 * 10 9 7 36 36 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 37 37 H 1.08999 * 110.87305 * 96.24314 * 11 10 9 38 38 H 1.08996 * 109.47362 * 186.45309 * 14 12 11 39 39 H 1.08999 * 109.47432 * 306.46119 * 14 12 11 40 40 H 0.97007 * 120.00042 * 359.97438 * 15 14 12 41 41 H 0.97000 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36633 * 85.31776 * 24 9 7 43 43 H 1.08996 * 110.37033 * 322.98156 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6286 -0.6460 1.2885 6 6 6.1586 -0.6452 1.2882 7 6 6.6615 -1.2828 2.5578 8 8 5.8738 -1.6974 3.3814 9 7 7.9867 -1.3922 2.7777 10 6 9.0470 -0.9336 1.8684 11 6 10.3981 -1.2427 2.5470 12 6 10.0181 -1.3432 4.0480 13 1 9.9678 -0.3551 4.5053 14 6 10.9969 -2.2452 4.8024 15 7 12.3199 -1.6163 4.8280 16 6 13.3644 -2.2441 5.4524 17 1 13.2131 -3.2031 5.9256 18 6 14.6180 -1.6485 5.4762 19 7 14.8026 -0.4801 4.8990 20 14 16.0431 -2.5052 6.3273 21 1 15.5776 -3.7970 6.8929 22 1 17.1272 -2.7579 5.3443 23 1 16.5577 -1.6424 7.4208 24 6 8.6130 -1.9915 3.9702 25 1 -0.3633 0.4618 -0.9181 26 1 -0.3633 -1.0260 0.0590 27 1 -0.3634 0.5641 0.8590 28 1 4.4804 1.0282 -0.0591 29 1 4.4818 -0.5618 -0.8591 30 1 4.2662 -1.6723 1.3475 31 1 4.2648 -0.0823 2.1475 32 1 6.5213 0.3810 1.2291 33 1 6.5221 -1.2091 0.4293 34 1 8.9532 0.1393 1.7008 35 1 8.9781 -1.4664 0.9200 36 1 11.1069 -0.4313 2.3823 37 1 10.8057 -2.1878 2.1883 38 1 10.6440 -2.3906 5.8233 39 1 11.0630 -3.2101 4.2998 40 1 12.4560 -0.7555 4.4020 41 1 15.6785 -0.0637 4.9160 42 1 8.6995 -3.0715 3.8509 43 1 8.0351 -1.7526 4.8629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317331050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:18 Heat of formation + Delta-G solvation = -18.085845 kcal Electronic energy + Delta-G solvation = -20410.196980 eV Core-core repulsion = 17262.201561 eV Total energy + Delta-G solvation = -3147.995419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14545 -38.96406 -36.63095 -36.40805 -34.27259 -33.85107 -31.93200 -30.61484 -30.08933 -27.84036 -26.67753 -24.62305 -23.90904 -22.74784 -21.34227 -20.09964 -19.15845 -18.28053 -17.50384 -17.33582 -16.83860 -16.40538 -15.97809 -15.51489 -15.33994 -14.97461 -14.75492 -14.69313 -14.40964 -14.39561 -13.96885 -13.90345 -13.72164 -13.26525 -13.16939 -13.00353 -12.92701 -12.76247 -12.47877 -12.17751 -12.10161 -11.87931 -11.75823 -11.66742 -11.58556 -10.96199 -10.93288 -10.64279 -10.56948 -9.66202 -8.98787 -7.94867 -5.23031 1.48817 1.49237 1.59193 1.62538 1.70487 1.78621 2.02315 2.56691 3.34260 3.39021 3.43089 3.67653 3.74108 3.89704 4.06989 4.09925 4.29247 4.33595 4.42396 4.48782 4.57625 4.62241 4.64364 4.69583 4.75363 4.80472 4.82665 4.84581 4.86872 4.89483 5.03448 5.09546 5.15036 5.19959 5.24980 5.27819 5.34645 5.42437 5.51181 6.27815 6.54603 6.73642 7.13975 7.35086 8.09558 8.34494 9.28600 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.066940 B = 0.002217 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.182365 B =12629.280458 C =12895.372013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.002 4.002 5 C -0.093 4.093 6 C -0.125 4.125 7 C 0.518 3.482 8 O -0.595 6.595 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.118 4.118 12 C -0.097 4.097 13 H 0.076 0.924 14 C 0.164 3.836 15 N -0.740 5.740 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.117 3.883 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.026 0.974 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.205 1.948 -14.121 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.038 4.038 5 C -0.131 4.131 6 C -0.164 4.164 7 C 0.309 3.691 8 O -0.476 6.476 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.156 4.156 12 C -0.117 4.117 13 H 0.094 0.906 14 C 0.037 3.963 15 N -0.383 5.383 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.007 4.007 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.636 1.585 -13.621 26.466 hybrid contribution 1.102 -0.139 0.812 1.376 sum -21.534 1.447 -12.809 25.097 Atomic orbital electron populations 1.19051 0.82764 1.03995 1.04134 1.23419 0.95478 1.01787 1.01270 1.23117 0.94962 1.01616 1.01823 1.18787 0.83133 1.03435 0.98459 1.21170 0.93692 1.01012 0.97213 1.21698 0.96158 1.04042 0.94519 1.21179 0.79983 0.78475 0.89415 1.90686 1.55576 1.51907 1.49424 1.48690 1.05590 1.59567 1.21352 1.22260 0.84865 1.01303 0.93246 1.22583 0.96507 1.03209 0.93336 1.22346 0.93071 0.99260 0.96977 0.90560 1.20649 0.84398 0.94594 0.96693 1.42458 1.05507 1.23496 1.66867 1.19659 0.89431 1.01932 1.26790 0.90849 1.25509 1.00209 0.98020 1.02727 1.69801 1.22974 1.18166 1.50762 0.85104 0.79447 0.77879 0.77499 1.19298 1.21875 1.22144 1.22060 0.92240 0.97665 0.88697 0.88708 0.89286 0.89331 0.87610 0.87475 0.92878 0.93042 0.85913 0.85658 0.89001 0.88494 0.90100 0.90829 0.96562 0.95585 0.79081 0.93969 0.91189 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.48 10.32 70.18 0.72 0.25 16 2 C -0.22 -4.20 14.13 31.13 0.44 -3.76 16 3 C -0.22 -4.22 13.34 31.13 0.42 -3.80 16 4 C 0.00 -0.03 5.70 28.79 0.16 0.14 16 5 C -0.09 -1.62 4.46 30.59 0.14 -1.48 16 6 C -0.13 -1.78 4.89 29.85 0.15 -1.64 16 7 C 0.52 12.89 7.85 87.66 0.69 13.57 16 8 O -0.59 -20.44 16.24 -3.02 -0.05 -20.49 16 9 N -0.62 -14.75 3.33 -811.76 -2.70 -17.45 16 10 C 0.10 1.89 6.49 86.73 0.56 2.45 16 11 C -0.12 -3.01 6.13 31.78 0.19 -2.81 16 12 C -0.10 -2.94 3.11 -9.39 -0.03 -2.97 16 13 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 14 C 0.16 6.33 5.71 86.38 0.49 6.83 16 15 N -0.74 -36.48 5.45 -343.46 -1.87 -38.35 16 16 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 19 N -0.97 -57.82 13.06 21.65 0.28 -57.53 16 20 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 C 0.12 3.27 6.38 86.86 0.55 3.83 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 32 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.03 1.00 8.11 -2.39 -0.02 0.98 16 40 H 0.38 19.42 7.53 -92.70 -0.70 18.72 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 Total: -1.00 -73.49 362.70 3.76 -69.72 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.28 Total: 22.21 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.80 Total: -5.76 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.29 Total: -113.34 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.49 3.76 -69.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317331050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.639 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds