Wall clock time and date at job start Tue Mar 31 2020 00:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 C 1.53004 * 109.46635 * 240.00418 * 2 1 3 5 5 C 1.47189 * 109.47513 * 120.00402 * 2 1 3 6 6 C 2.64596 * 109.47428 * 120.00257 * 2 1 3 7 7 C 4.07791 * 109.47497 * 120.00285 * 2 1 3 8 8 O 1.21619 * 120.00041 * 218.95998 * 7 6 5 9 9 N 1.34778 * 120.00332 * 38.95850 * 7 6 5 10 10 C 1.46494 * 120.00022 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.47086 * 174.80127 * 10 9 7 12 12 H 1.09004 * 109.99203 * 57.08553 * 11 10 9 13 13 C 1.54315 * 109.88045 * 295.98834 * 11 10 9 14 14 C 1.55157 * 102.94351 * 218.38777 * 13 11 10 15 15 C 1.54917 * 101.57947 * 35.50263 * 14 13 11 16 16 N 1.47020 * 109.88161 * 178.17595 * 11 10 9 17 17 C 1.36931 * 125.65049 * 298.34037 * 16 11 10 18 18 H 1.07994 * 120.00345 * 345.37421 * 17 16 11 19 19 C 1.38823 * 119.99959 * 165.38340 * 17 16 11 20 20 N 1.31611 * 119.99760 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47169 * 89.99842 * 21 19 17 23 23 H 1.48502 * 109.46549 * 209.99627 * 21 19 17 24 24 H 1.48497 * 109.47089 * 329.99348 * 21 19 17 25 25 H 1.09004 * 109.46506 * 299.99391 * 1 2 3 26 26 H 1.09000 * 109.47574 * 59.99468 * 1 2 3 27 27 H 1.09004 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46821 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47267 * 300.00149 * 3 2 1 30 30 H 1.08993 * 109.46800 * 60.00493 * 3 2 1 31 31 H 1.08998 * 109.47363 * 299.99665 * 4 2 1 32 32 H 1.09000 * 109.47047 * 59.99791 * 4 2 1 33 33 H 1.09000 * 109.46620 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99760 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47901 * 54.80457 * 10 9 7 36 36 H 1.08996 * 109.47179 * 294.79827 * 10 9 7 37 37 H 1.09005 * 110.72369 * 100.02605 * 13 11 10 38 38 H 1.09002 * 110.87430 * 336.82094 * 13 11 10 39 39 H 1.09000 * 111.00908 * 153.57429 * 14 13 11 40 40 H 1.09005 * 111.00359 * 277.43077 * 14 13 11 41 41 H 1.08998 * 110.36516 * 81.83154 * 15 14 13 42 42 H 1.09000 * 110.36516 * 204.15346 * 15 14 13 43 43 H 0.96998 * 120.00031 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0208 -0.6939 1.2017 6 6 2.4122 -1.2474 2.1603 7 6 2.8896 -1.9225 3.3294 8 8 3.4488 -1.2948 4.2083 9 7 2.7193 -3.2534 3.4559 10 6 3.2072 -3.9439 4.6522 11 6 2.7761 -5.4113 4.6057 12 1 3.1464 -5.8798 3.6938 13 6 1.2369 -5.5079 4.6578 14 6 0.9969 -6.7514 5.5543 15 6 2.1611 -6.6323 6.5694 16 7 3.2983 -6.1234 5.7812 17 6 4.6218 -6.2871 6.0923 18 1 5.3796 -6.0910 5.3483 19 6 4.9893 -6.7053 7.3640 20 7 4.0657 -6.9439 8.2707 21 14 6.7947 -6.9280 7.7884 22 1 7.3390 -5.6529 8.3206 23 1 6.9342 -7.9923 8.8146 24 1 7.5460 -7.3158 6.5677 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 2.2729 -3.7540 2.7551 35 1 2.7895 -3.4706 5.5409 36 1 4.2951 -3.8858 4.6870 37 1 0.8264 -5.6665 3.6606 38 1 0.8069 -4.6157 5.1129 39 1 0.0320 -6.6899 6.0576 40 1 1.0759 -7.6716 4.9753 41 1 1.9034 -5.9291 7.3613 42 1 2.3984 -7.6091 6.9907 43 1 4.3225 -7.2358 9.1594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317506296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:21 Heat of formation + Delta-G solvation = 20.307643 kcal Electronic energy + Delta-G solvation = -21141.845672 eV Core-core repulsion = 17995.515119 eV Total energy + Delta-G solvation = -3146.330553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.44297 -37.82959 -37.56385 -34.28717 -32.55245 -32.25582 -29.68651 -28.70602 -27.67593 -27.66161 -25.28145 -24.37443 -22.82750 -20.88224 -20.20661 -19.67873 -18.28573 -16.68481 -16.10333 -15.94846 -15.16107 -14.90092 -14.61255 -14.56680 -14.42849 -13.88987 -13.48032 -13.13711 -12.81271 -12.77738 -12.12274 -12.08876 -12.07173 -11.90207 -11.81917 -11.62631 -11.57780 -11.33306 -10.95656 -10.80015 -10.54171 -10.37843 -10.24846 -10.11677 -10.04310 -9.89710 -9.82289 -9.70501 -8.73371 -8.59315 -6.85481 -5.77807 -3.14585 1.65625 2.29370 3.21842 3.40646 3.46214 3.46910 3.64897 4.12680 4.48847 4.55087 4.57905 4.68985 5.19822 5.23040 5.23988 5.32553 5.37897 5.39031 5.47344 5.47541 5.49634 5.61001 5.67010 5.74498 5.79482 5.89292 5.90322 6.03595 6.12018 6.23429 6.44233 6.52073 6.57020 6.66827 6.77785 7.02682 7.19439 7.50498 7.59968 7.69884 7.78312 8.24037 8.36314 9.16313 9.76778 10.43976 11.34225 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003344 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.809648 B = 8371.023736 C = 9053.054480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.038 3.962 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.086 4.086 6 C -0.209 4.209 7 C 0.623 3.377 8 O -0.526 6.526 9 N -0.708 5.708 10 C 0.108 3.892 11 C 0.152 3.848 12 H 0.039 0.961 13 C -0.127 4.127 14 C -0.148 4.148 15 C 0.172 3.828 16 N -0.588 5.588 17 C -0.236 4.236 18 H 0.076 0.924 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.280 1.280 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 9.999 -17.929 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.038 3.962 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.408 3.592 8 O -0.404 6.404 9 N -0.358 5.358 10 C -0.017 4.017 11 C 0.043 3.957 12 H 0.056 0.944 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.312 5.312 17 C -0.364 4.364 18 H 0.094 0.906 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.206 1.206 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.482 10.303 -17.033 21.638 hybrid contribution 0.791 -0.251 0.073 0.833 sum -7.691 10.052 -16.960 21.162 Atomic orbital electron populations 1.21901 0.92299 1.02886 1.02748 1.17898 0.95921 0.94371 0.87977 1.21913 1.01852 0.93511 1.02693 1.21902 1.01809 1.00667 0.95468 1.22440 0.95085 0.97404 0.93974 1.21001 1.03043 1.01197 0.95942 1.14790 0.79376 0.82105 0.82934 1.90870 1.42383 1.66357 1.40810 1.46022 1.59495 1.06779 1.23538 1.22368 1.00064 0.93859 0.85375 1.21137 0.92303 0.89334 0.92894 0.94351 1.22612 0.95738 0.98963 0.99201 1.23009 0.99806 0.96820 0.99070 1.21466 0.83500 0.99656 0.90647 1.44493 1.02475 1.59798 1.24478 1.18991 0.81404 1.40619 0.95388 0.90603 1.24923 0.97800 1.01508 0.95575 1.69933 1.30953 1.50934 1.04254 0.86140 0.84337 0.77496 0.77922 1.21346 1.21638 1.20554 0.91931 0.91221 0.91850 0.91913 0.91292 0.91887 0.91838 0.91239 0.91931 0.76734 0.91149 0.91134 0.92392 0.91778 0.92310 0.92279 0.95544 0.90916 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.43 37.16 0.31 -0.63 16 2 C 0.04 0.32 0.95 -157.29 -0.15 0.17 16 3 C -0.14 -1.04 8.43 37.16 0.31 -0.72 16 4 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16 5 C -0.09 -1.04 11.77 -37.13 -0.44 -1.48 16 6 C -0.21 -3.07 13.61 -38.84 -0.53 -3.60 16 7 C 0.62 10.95 7.65 -14.34 -0.11 10.84 16 8 O -0.53 -11.48 17.08 5.26 0.09 -11.39 16 9 N -0.71 -11.30 5.31 -62.76 -0.33 -11.64 16 10 C 0.11 2.11 5.07 -4.04 -0.02 2.09 16 11 C 0.15 3.00 3.23 -66.95 -0.22 2.78 16 12 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.13 -2.12 6.07 -24.90 -0.15 -2.27 16 14 C -0.15 -2.71 7.09 -24.58 -0.17 -2.88 16 15 C 0.17 4.09 5.41 -2.52 -0.01 4.08 16 16 N -0.59 -14.58 3.13 -162.56 -0.51 -15.09 16 17 C -0.24 -6.45 9.77 -15.06 -0.15 -6.60 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 19 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 20 N -0.91 -26.63 10.58 55.49 0.59 -26.04 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.40 5.12 8.28 -40.82 -0.34 4.79 16 35 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 36 H 0.07 1.54 7.94 -51.93 -0.41 1.13 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.07 7.83 -51.93 -0.41 0.66 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 42 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.11 357.44 -8.30 -40.41 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.40 Total: 0.23 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.10 Total: 1.02 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.25 Total: -52.77 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.11 -8.30 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317506296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.720 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds