Wall clock time and date at job start Tue Mar 31 2020 00:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 C 1.53004 * 109.46635 * 240.00418 * 2 1 3 5 5 C 1.47189 * 109.47513 * 120.00402 * 2 1 3 6 6 C 2.64596 * 109.47428 * 120.00257 * 2 1 3 7 7 C 4.07791 * 109.47497 * 120.00285 * 2 1 3 8 8 O 1.21619 * 120.00041 * 218.95998 * 7 6 5 9 9 N 1.34778 * 120.00332 * 38.95850 * 7 6 5 10 10 C 1.46494 * 120.00022 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.47086 * 174.80127 * 10 9 7 12 12 H 1.09004 * 109.99203 * 57.08553 * 11 10 9 13 13 C 1.54315 * 109.88045 * 295.98834 * 11 10 9 14 14 C 1.55157 * 102.94351 * 218.38777 * 13 11 10 15 15 C 1.54917 * 101.57947 * 35.50263 * 14 13 11 16 16 N 1.47020 * 109.88161 * 178.17595 * 11 10 9 17 17 C 1.36931 * 125.65049 * 298.34037 * 16 11 10 18 18 H 1.07994 * 120.00345 * 345.37421 * 17 16 11 19 19 C 1.38823 * 119.99959 * 165.38340 * 17 16 11 20 20 N 1.31611 * 119.99760 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47169 * 89.99842 * 21 19 17 23 23 H 1.48502 * 109.46549 * 209.99627 * 21 19 17 24 24 H 1.48497 * 109.47089 * 329.99348 * 21 19 17 25 25 H 1.09004 * 109.46506 * 299.99391 * 1 2 3 26 26 H 1.09000 * 109.47574 * 59.99468 * 1 2 3 27 27 H 1.09004 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46821 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47267 * 300.00149 * 3 2 1 30 30 H 1.08993 * 109.46800 * 60.00493 * 3 2 1 31 31 H 1.08998 * 109.47363 * 299.99665 * 4 2 1 32 32 H 1.09000 * 109.47047 * 59.99791 * 4 2 1 33 33 H 1.09000 * 109.46620 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99760 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47901 * 54.80457 * 10 9 7 36 36 H 1.08996 * 109.47179 * 294.79827 * 10 9 7 37 37 H 1.09005 * 110.72369 * 100.02605 * 13 11 10 38 38 H 1.09002 * 110.87430 * 336.82094 * 13 11 10 39 39 H 1.09000 * 111.00908 * 153.57429 * 14 13 11 40 40 H 1.09005 * 111.00359 * 277.43077 * 14 13 11 41 41 H 1.08998 * 110.36516 * 81.83154 * 15 14 13 42 42 H 1.09000 * 110.36516 * 204.15346 * 15 14 13 43 43 H 0.96998 * 120.00031 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0208 -0.6939 1.2017 6 6 2.4122 -1.2474 2.1603 7 6 2.8896 -1.9225 3.3294 8 8 3.4488 -1.2948 4.2083 9 7 2.7193 -3.2534 3.4559 10 6 3.2072 -3.9439 4.6522 11 6 2.7761 -5.4113 4.6057 12 1 3.1464 -5.8798 3.6938 13 6 1.2369 -5.5079 4.6578 14 6 0.9969 -6.7514 5.5543 15 6 2.1611 -6.6323 6.5694 16 7 3.2983 -6.1234 5.7812 17 6 4.6218 -6.2871 6.0923 18 1 5.3796 -6.0910 5.3483 19 6 4.9893 -6.7053 7.3640 20 7 4.0657 -6.9439 8.2707 21 14 6.7947 -6.9280 7.7884 22 1 7.3390 -5.6529 8.3206 23 1 6.9342 -7.9923 8.8146 24 1 7.5460 -7.3158 6.5677 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 2.2729 -3.7540 2.7551 35 1 2.7895 -3.4706 5.5409 36 1 4.2951 -3.8858 4.6870 37 1 0.8264 -5.6665 3.6606 38 1 0.8069 -4.6157 5.1129 39 1 0.0320 -6.6899 6.0576 40 1 1.0759 -7.6716 4.9753 41 1 1.9034 -5.9291 7.3613 42 1 2.3984 -7.6091 6.9907 43 1 4.3225 -7.2358 9.1594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317506296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:20 Heat of formation + Delta-G solvation = 0.137560 kcal Electronic energy + Delta-G solvation = -21142.720312 eV Core-core repulsion = 17995.515119 eV Total energy + Delta-G solvation = -3147.205193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91811 -39.30302 -38.46018 -35.88803 -34.44637 -33.37434 -31.45325 -30.40482 -28.19453 -28.16776 -26.92622 -26.17232 -24.13482 -22.12401 -21.75411 -21.25802 -19.70092 -18.55869 -17.55131 -16.92308 -16.73389 -16.54853 -16.07362 -15.71544 -15.22558 -15.19950 -14.97074 -14.73580 -14.00899 -13.68215 -13.48794 -13.33336 -13.29098 -13.02706 -12.86914 -12.74457 -12.70736 -12.59824 -12.29489 -12.24808 -12.02037 -11.93311 -11.77373 -11.58128 -11.50303 -11.41792 -11.31929 -11.23809 -10.70121 -10.23748 -8.88358 -7.90125 -5.27988 0.45415 1.21376 1.43596 1.46455 1.53824 1.96535 2.41631 2.47727 3.09194 3.29888 3.72394 3.88587 3.94977 3.96628 3.97901 4.01431 4.22972 4.32491 4.41343 4.52594 4.69693 4.75578 4.77226 4.86057 4.91368 4.97233 4.97925 4.98307 5.08724 5.10747 5.14636 5.21556 5.26139 5.37194 5.39208 5.45318 5.51849 5.65248 5.76919 6.14942 6.21051 6.37215 7.01383 7.07595 7.74054 8.39958 9.20861 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.003344 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.809648 B = 8371.023736 C = 9053.054480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.031 3.969 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.036 4.036 6 C -0.266 4.266 7 C 0.627 3.373 8 O -0.580 6.580 9 N -0.689 5.689 10 C 0.127 3.873 11 C 0.149 3.851 12 H 0.055 0.945 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.242 4.242 18 H 0.078 0.922 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.972 3.028 22 H -0.291 1.291 23 H -0.291 1.291 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.418 0.582 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.072 0.928 41 H -0.008 1.008 42 H 0.037 0.963 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 10.636 -21.621 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.414 3.586 8 O -0.462 6.462 9 N -0.340 5.340 10 C 0.001 3.999 11 C 0.041 3.959 12 H 0.073 0.927 13 C -0.152 4.152 14 C -0.171 4.171 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.371 4.371 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.800 3.200 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.010 0.990 42 H 0.056 0.944 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.037 10.926 -20.797 25.547 hybrid contribution 1.219 -0.364 1.089 1.675 sum -8.818 10.562 -19.708 24.035 Atomic orbital electron populations 1.21931 0.90601 1.03357 1.03799 1.18335 0.97198 0.94658 0.86749 1.21957 1.01428 0.92875 1.03800 1.21932 1.01428 1.00935 0.95405 1.23393 0.92033 0.94982 0.93415 1.20442 1.06014 1.03691 0.96710 1.15048 0.78232 0.82134 0.83145 1.90833 1.44903 1.67439 1.43015 1.45680 1.59029 1.06500 1.22804 1.21864 0.98059 0.94160 0.85825 1.21342 0.94722 0.88382 0.91426 0.92721 1.22609 0.92983 0.98172 1.01468 1.22873 0.98233 0.98197 0.97774 1.21286 0.85629 0.96708 0.91578 1.44757 1.02034 1.60925 1.25741 1.19319 0.83019 1.39336 0.95474 0.90452 1.25699 1.01565 1.02251 0.95785 1.70134 1.32507 1.52399 1.04229 0.85177 0.80040 0.76889 0.77852 1.21817 1.21738 1.19125 0.92674 0.88477 0.91711 0.92704 0.88334 0.92724 0.91686 0.88522 0.92636 0.74431 0.93966 0.94094 0.87683 0.91750 0.89867 0.90942 0.99018 0.94422 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.43 71.98 0.61 -0.76 16 2 C 0.03 0.41 0.95 -53.99 -0.05 0.36 16 3 C -0.14 -1.67 8.43 71.98 0.61 -1.06 16 4 C -0.14 -1.35 8.43 71.98 0.61 -0.75 16 5 C -0.04 -0.79 11.77 31.12 0.37 -0.43 16 6 C -0.27 -7.67 13.61 30.01 0.41 -7.26 16 7 C 0.63 22.42 7.65 85.49 0.65 23.08 16 8 O -0.58 -26.49 17.08 -4.09 -0.07 -26.56 16 9 N -0.69 -21.73 5.31 -470.74 -2.50 -24.23 16 10 C 0.13 5.08 5.07 86.38 0.44 5.52 16 11 C 0.15 5.75 3.23 45.34 0.15 5.89 16 12 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.11 -3.50 6.07 31.78 0.19 -3.31 16 14 C -0.13 -4.56 7.09 31.99 0.23 -4.34 16 15 C 0.17 8.44 5.41 86.86 0.47 8.91 16 16 N -0.61 -30.84 3.13 -668.23 -2.09 -32.93 16 17 C -0.24 -13.61 9.77 84.04 0.82 -12.79 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.06 -3.41 5.47 84.87 0.46 -2.95 16 20 N -0.94 -57.41 10.58 21.65 0.23 -57.19 16 21 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.42 9.87 8.28 -92.71 -0.77 9.10 16 35 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.04 1.87 7.94 -2.39 -0.02 1.85 16 37 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.00 7.83 -2.39 -0.02 1.98 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 41 H -0.01 -0.45 8.06 -2.39 -0.02 -0.47 16 42 H 0.04 2.07 6.93 -2.39 -0.02 2.05 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -74.86 357.44 3.77 -71.09 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.21 Total: 10.91 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.96 Total: 10.12 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.36 Total: -114.35 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.86 3.77 -71.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317506296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds