Wall clock time and date at job start Tue Mar 31 2020 00:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47208 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 242.81633 * 3 2 1 5 5 C 1.53002 * 109.47088 * 204.61388 * 4 3 2 6 6 C 1.52991 * 109.47110 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47249 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99352 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00300 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00007 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46943 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46867 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00168 * 270.00096 * 12 11 10 14 14 H 1.07997 * 119.99803 * 144.92408 * 13 12 11 15 15 C 1.38812 * 120.00029 * 324.92336 * 13 12 11 16 16 N 1.31620 * 119.99923 * 337.94615 * 15 13 12 17 17 Si 1.86798 * 120.00018 * 157.95106 * 15 13 12 18 18 H 1.48498 * 109.47670 * 59.99599 * 17 15 13 19 19 H 1.48500 * 109.47161 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46770 * 299.99456 * 17 15 13 21 21 C 1.46503 * 119.99704 * 90.00219 * 12 11 10 22 22 C 1.53004 * 117.49740 * 183.23422 * 21 12 11 23 23 C 1.52995 * 117.49870 * 114.57730 * 21 12 11 24 24 H 1.09001 * 109.47139 * 92.57264 * 1 2 3 25 25 H 1.09000 * 109.47002 * 212.57638 * 1 2 3 26 26 H 1.09000 * 109.46960 * 332.57184 * 1 2 3 27 27 H 1.08995 * 109.47011 * 84.61092 * 4 3 2 28 28 H 1.09000 * 109.46850 * 324.61064 * 4 3 2 29 29 H 1.09005 * 109.47105 * 59.99541 * 5 4 3 30 30 H 1.09011 * 109.46615 * 299.99906 * 5 4 3 31 31 H 1.09005 * 109.47561 * 59.99759 * 6 5 4 32 32 H 1.09004 * 109.46949 * 299.99171 * 6 5 4 33 33 H 0.96998 * 119.99871 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.46962 * 60.00266 * 10 9 7 35 35 H 1.08994 * 109.46981 * 300.00084 * 10 9 7 36 36 H 1.08995 * 109.46805 * 59.99961 * 11 10 9 37 37 H 1.09000 * 109.47048 * 299.99939 * 11 10 9 38 38 H 0.96995 * 119.99672 * 175.76702 * 16 15 13 39 39 H 1.08999 * 115.55313 * 328.90767 * 21 12 11 40 40 H 1.09001 * 117.49599 * 0.02562 * 22 21 12 41 41 H 1.09000 * 117.49619 * 145.02077 * 22 21 12 42 42 H 1.09002 * 117.50220 * 214.97803 * 23 21 12 43 43 H 1.09001 * 117.50083 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0015 0.0006 5 6 4.6270 1.3133 0.6016 6 6 6.1569 1.3145 0.6016 7 6 6.6582 2.6069 1.1930 8 8 5.8693 3.4441 1.5771 9 7 7.9830 2.8317 1.2961 10 6 8.4703 4.0878 1.8715 11 6 10.0003 4.0886 1.8726 12 7 10.4875 5.3449 2.4474 13 6 10.7157 6.4253 1.6377 14 1 10.5191 7.4233 2.0008 15 6 11.1998 6.2379 0.3503 16 7 11.8397 5.1297 0.0427 17 14 10.9430 7.5586 -0.9456 18 1 11.5866 8.8207 -0.5006 19 1 11.5492 7.1185 -2.2278 20 1 9.4882 7.7861 -1.1389 21 6 10.7306 5.4452 3.8887 22 6 11.1662 6.8050 4.4386 23 6 12.1744 5.6568 4.3485 24 1 -0.3633 -0.0461 -1.0266 25 1 -0.3633 -0.8660 0.5533 26 1 -0.3633 0.9122 0.4734 27 1 4.4818 -0.0948 -1.0224 28 1 4.4817 -0.8361 0.5959 29 1 4.2631 1.4095 1.6246 30 1 4.2633 2.1509 0.0062 31 1 6.5204 1.2185 -0.4215 32 1 6.5209 0.4770 1.1968 33 1 8.6139 2.1616 0.9899 34 1 8.1066 4.1840 2.8945 35 1 8.1066 4.9253 1.2763 36 1 10.3644 3.9921 0.8498 37 1 10.3636 3.2511 2.4681 38 1 12.1240 4.9715 -0.8711 39 1 10.0870 4.8306 4.5179 40 1 11.2714 7.6249 3.7281 41 1 10.8093 7.0846 5.4299 42 1 12.4806 5.1816 5.2805 43 1 12.9435 5.7209 3.5788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317554202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:31 Heat of formation + Delta-G solvation = 36.421521 kcal Electronic energy + Delta-G solvation = -20641.099263 eV Core-core repulsion = 17495.467460 eV Total energy + Delta-G solvation = -3145.631802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.36037 -37.14082 -35.84844 -34.70039 -33.38029 -33.19653 -30.90038 -29.80834 -27.80791 -26.35642 -24.37963 -22.46263 -21.55871 -21.20971 -20.04448 -19.68823 -17.31462 -16.44128 -16.00356 -15.93796 -15.51020 -15.32788 -14.67629 -14.50558 -14.01607 -13.98934 -13.82337 -13.72173 -13.29572 -13.00851 -12.70226 -12.34023 -12.18681 -11.93694 -11.59825 -11.55174 -11.05030 -10.96986 -10.77051 -10.73083 -10.33422 -10.13890 -9.91922 -9.87878 -9.83599 -9.65933 -9.51526 -9.28839 -8.56826 -8.46910 -6.66240 -5.86981 -3.47319 2.54951 2.58427 2.99343 3.33168 3.39108 3.43124 3.59202 4.09977 4.41465 4.83604 4.90404 4.91334 4.97054 5.24640 5.25374 5.27940 5.31343 5.39564 5.42175 5.42926 5.53176 5.56344 5.80517 5.88362 6.03196 6.04354 6.10937 6.19715 6.22154 6.28853 6.48087 6.52656 6.60393 6.88271 6.97447 7.06180 7.19516 7.51763 7.52265 7.74255 7.94940 8.39289 8.62169 9.06726 9.69453 10.24311 11.09299 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002988 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.908162 B = 9369.163988 C =10087.789640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.202 4.202 3 C -0.181 4.181 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.505 3.495 8 O -0.550 6.550 9 N -0.722 5.722 10 C 0.099 3.901 11 C 0.136 3.864 12 N -0.547 5.547 13 C -0.258 4.258 14 H 0.068 0.932 15 C 0.011 3.989 16 N -0.884 5.884 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.031 0.969 38 H 0.255 0.745 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.190 -11.749 0.473 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.202 4.202 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.182 4.182 7 C 0.290 3.710 8 O -0.428 6.428 9 N -0.372 5.372 10 C -0.027 4.027 11 C 0.009 3.991 12 N -0.264 5.264 13 C -0.388 4.388 14 H 0.085 0.915 15 C -0.189 4.189 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.207 1.207 21 C 0.010 3.990 22 C -0.234 4.234 23 C -0.261 4.261 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.231 0.769 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.608 -11.150 0.584 16.842 hybrid contribution 0.314 0.376 -0.830 0.964 sum -12.294 -10.775 -0.246 16.349 Atomic orbital electron populations 1.18827 0.84812 1.02948 1.02834 1.22407 0.93982 1.01745 1.02106 1.22379 0.93705 1.01073 1.00948 1.18736 0.84372 0.98966 1.02340 1.21269 0.93272 0.96481 1.02626 1.21681 0.97104 0.96524 1.02855 1.20605 0.82662 0.88687 0.79016 1.90688 1.55345 1.47270 1.49464 1.46120 1.06546 1.21335 1.63242 1.22294 0.98748 0.84447 0.97176 1.21104 0.88046 0.87123 1.02810 1.43221 1.72215 1.10742 1.00231 1.19059 1.37444 0.87396 0.94872 0.91475 1.25120 0.96398 0.97517 0.99894 1.70027 1.36833 1.27100 1.18700 0.86452 0.78276 0.81678 0.80968 1.20593 1.21536 1.20734 1.21236 0.93794 0.97278 0.86696 1.23043 1.05631 0.94031 1.00652 1.23361 0.96789 1.04246 1.01702 0.90389 0.90408 0.90224 0.89546 0.89586 0.90863 0.90815 0.88803 0.88895 0.76906 0.93293 0.91700 0.87686 0.95051 0.93461 0.89484 0.88411 0.90677 0.91170 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.08 16 2 C -0.20 -2.26 14.13 -37.12 -0.52 -2.78 16 3 C -0.18 -2.10 13.34 -37.12 -0.50 -2.60 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -1.12 4.46 -26.73 -0.12 -1.23 16 6 C -0.14 -1.50 5.70 -27.89 -0.16 -1.66 16 7 C 0.50 8.06 7.83 -10.98 -0.09 7.97 16 8 O -0.55 -11.21 15.98 5.56 0.09 -11.12 16 9 N -0.72 -11.59 5.56 -60.29 -0.33 -11.93 16 10 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 11 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 12 N -0.55 -13.11 2.78 -165.67 -0.46 -13.57 16 13 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 14 H 0.07 1.78 6.55 -52.49 -0.34 1.44 16 15 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 16 N -0.88 -24.13 11.33 55.49 0.63 -23.50 16 17 Si 0.90 21.19 29.61 -169.99 -5.03 16.15 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 22 C -0.20 -3.84 9.80 -26.69 -0.26 -4.11 16 23 C -0.22 -4.42 10.36 -26.70 -0.28 -4.70 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 5.24 8.47 -40.82 -0.35 4.90 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.11 2.55 5.35 -51.93 -0.28 2.27 16 37 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.26 6.75 8.32 -40.82 -0.34 6.42 16 39 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -31.55 365.01 -9.24 -40.79 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.19 Total: 6.70 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.44 Total: -9.03 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.17 Total: -49.00 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.55 -9.24 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317554202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.216 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds