Wall clock time and date at job start Tue Mar 31 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47208 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 242.81633 * 3 2 1 5 5 C 1.53002 * 109.47088 * 204.61388 * 4 3 2 6 6 C 1.52991 * 109.47110 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47249 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99352 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00300 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00007 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46943 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46867 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00168 * 270.00096 * 12 11 10 14 14 H 1.07997 * 119.99803 * 144.92408 * 13 12 11 15 15 C 1.38812 * 120.00029 * 324.92336 * 13 12 11 16 16 N 1.31620 * 119.99923 * 337.94615 * 15 13 12 17 17 Si 1.86798 * 120.00018 * 157.95106 * 15 13 12 18 18 H 1.48498 * 109.47670 * 59.99599 * 17 15 13 19 19 H 1.48500 * 109.47161 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46770 * 299.99456 * 17 15 13 21 21 C 1.46503 * 119.99704 * 90.00219 * 12 11 10 22 22 C 1.53004 * 117.49740 * 183.23422 * 21 12 11 23 23 C 1.52995 * 117.49870 * 114.57730 * 21 12 11 24 24 H 1.09001 * 109.47139 * 92.57264 * 1 2 3 25 25 H 1.09000 * 109.47002 * 212.57638 * 1 2 3 26 26 H 1.09000 * 109.46960 * 332.57184 * 1 2 3 27 27 H 1.08995 * 109.47011 * 84.61092 * 4 3 2 28 28 H 1.09000 * 109.46850 * 324.61064 * 4 3 2 29 29 H 1.09005 * 109.47105 * 59.99541 * 5 4 3 30 30 H 1.09011 * 109.46615 * 299.99906 * 5 4 3 31 31 H 1.09005 * 109.47561 * 59.99759 * 6 5 4 32 32 H 1.09004 * 109.46949 * 299.99171 * 6 5 4 33 33 H 0.96998 * 119.99871 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.46962 * 60.00266 * 10 9 7 35 35 H 1.08994 * 109.46981 * 300.00084 * 10 9 7 36 36 H 1.08995 * 109.46805 * 59.99961 * 11 10 9 37 37 H 1.09000 * 109.47048 * 299.99939 * 11 10 9 38 38 H 0.96995 * 119.99672 * 175.76702 * 16 15 13 39 39 H 1.08999 * 115.55313 * 328.90767 * 21 12 11 40 40 H 1.09001 * 117.49599 * 0.02562 * 22 21 12 41 41 H 1.09000 * 117.49619 * 145.02077 * 22 21 12 42 42 H 1.09002 * 117.50220 * 214.97803 * 23 21 12 43 43 H 1.09001 * 117.50083 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0015 0.0006 5 6 4.6270 1.3133 0.6016 6 6 6.1569 1.3145 0.6016 7 6 6.6582 2.6069 1.1930 8 8 5.8693 3.4441 1.5771 9 7 7.9830 2.8317 1.2961 10 6 8.4703 4.0878 1.8715 11 6 10.0003 4.0886 1.8726 12 7 10.4875 5.3449 2.4474 13 6 10.7157 6.4253 1.6377 14 1 10.5191 7.4233 2.0008 15 6 11.1998 6.2379 0.3503 16 7 11.8397 5.1297 0.0427 17 14 10.9430 7.5586 -0.9456 18 1 11.5866 8.8207 -0.5006 19 1 11.5492 7.1185 -2.2278 20 1 9.4882 7.7861 -1.1389 21 6 10.7306 5.4452 3.8887 22 6 11.1662 6.8050 4.4386 23 6 12.1744 5.6568 4.3485 24 1 -0.3633 -0.0461 -1.0266 25 1 -0.3633 -0.8660 0.5533 26 1 -0.3633 0.9122 0.4734 27 1 4.4818 -0.0948 -1.0224 28 1 4.4817 -0.8361 0.5959 29 1 4.2631 1.4095 1.6246 30 1 4.2633 2.1509 0.0062 31 1 6.5204 1.2185 -0.4215 32 1 6.5209 0.4770 1.1968 33 1 8.6139 2.1616 0.9899 34 1 8.1066 4.1840 2.8945 35 1 8.1066 4.9253 1.2763 36 1 10.3644 3.9921 0.8498 37 1 10.3636 3.2511 2.4681 38 1 12.1240 4.9715 -0.8711 39 1 10.0870 4.8306 4.5179 40 1 11.2714 7.6249 3.7281 41 1 10.8093 7.0846 5.4299 42 1 12.4806 5.1816 5.2805 43 1 12.9435 5.7209 3.5788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317554202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:30 Heat of formation + Delta-G solvation = 18.242484 kcal Electronic energy + Delta-G solvation = -20641.887565 eV Core-core repulsion = 17495.467460 eV Total energy + Delta-G solvation = -3146.420105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70184 -38.85199 -36.75590 -36.19288 -34.96396 -34.19137 -32.68732 -30.76202 -29.25910 -27.37074 -26.15519 -23.75617 -23.02332 -22.69585 -21.59734 -21.17623 -18.58705 -17.94626 -17.35806 -17.13300 -16.93232 -16.83702 -16.18260 -15.97394 -15.53160 -14.88037 -14.71146 -14.62878 -14.46159 -14.22304 -14.20099 -13.76776 -13.37229 -13.24730 -13.10342 -12.91749 -12.64594 -12.52779 -12.43959 -12.13515 -11.91755 -11.84881 -11.67872 -11.38907 -11.00536 -10.86052 -10.63634 -10.56932 -10.50311 -9.99511 -8.58416 -7.84984 -5.48863 1.42819 1.46223 1.52235 1.71595 1.72600 1.78513 2.28648 2.50442 3.12347 3.38347 3.39770 3.55847 3.84775 4.08904 4.13583 4.28738 4.36741 4.39386 4.48451 4.53904 4.61735 4.66561 4.72465 4.76324 4.81410 4.82371 4.85567 4.88799 4.93394 5.03510 5.14970 5.20880 5.24240 5.31354 5.34596 5.51613 5.53690 5.66479 5.76473 6.41441 6.68232 6.73421 7.10847 7.36075 7.79919 8.28996 9.06741 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002988 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.908162 B = 9369.163988 C =10087.789640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.220 4.220 3 C -0.216 4.216 4 C -0.001 4.001 5 C -0.093 4.093 6 C -0.127 4.127 7 C 0.499 3.501 8 O -0.600 6.600 9 N -0.714 5.714 10 C 0.120 3.880 11 C 0.144 3.856 12 N -0.566 5.566 13 C -0.264 4.264 14 H 0.058 0.942 15 C -0.031 4.031 16 N -0.906 5.906 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.286 1.286 21 C 0.098 3.902 22 C -0.186 4.186 23 C -0.210 4.210 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.414 0.586 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.254 0.746 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -13.385 0.867 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.216 4.216 4 C -0.038 4.038 5 C -0.131 4.131 6 C -0.167 4.167 7 C 0.288 3.712 8 O -0.481 6.481 9 N -0.366 5.366 10 C -0.007 4.007 11 C 0.017 3.983 12 N -0.283 5.283 13 C -0.394 4.394 14 H 0.075 0.925 15 C -0.229 4.229 16 N -0.550 5.550 17 Si 0.777 3.223 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.010 4.010 22 C -0.224 4.224 23 C -0.251 4.251 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.251 0.749 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.985 -12.814 0.981 18.269 hybrid contribution 0.393 0.892 -0.885 1.316 sum -12.592 -11.922 0.097 17.341 Atomic orbital electron populations 1.19054 0.82672 1.04001 1.04149 1.23429 0.95490 1.01251 1.01801 1.23130 0.94983 1.01820 1.01627 1.18788 0.83173 0.98150 1.03652 1.21166 0.93840 0.96988 1.01139 1.21707 0.96229 0.94131 1.04588 1.21613 0.81823 0.89940 0.77863 1.90670 1.56459 1.49414 1.51591 1.45983 1.07327 1.20305 1.62985 1.21752 0.97488 0.85147 0.96276 1.20976 0.88739 0.86959 1.01623 1.43426 1.72793 1.10723 1.01387 1.19168 1.36739 0.87897 0.95600 0.92487 1.25665 0.96770 0.99193 1.01260 1.70112 1.37848 1.28312 1.18712 0.85648 0.77610 0.79924 0.79141 1.20294 1.21326 1.21272 1.21543 0.94968 0.98963 0.85555 1.23056 1.04973 0.92745 1.01637 1.23267 0.95217 1.04595 1.02038 0.88931 0.88765 0.89553 0.87663 0.87269 0.92864 0.93410 0.85944 0.85196 0.74912 0.93870 0.95496 0.89976 0.93436 0.93698 0.87138 0.90763 0.87215 0.87787 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.17 16 2 C -0.22 -4.74 14.13 31.13 0.44 -4.30 16 3 C -0.22 -4.83 13.34 31.13 0.42 -4.41 16 4 C 0.00 -0.02 5.70 28.79 0.16 0.14 16 5 C -0.09 -2.02 4.46 30.59 0.14 -1.88 16 6 C -0.13 -2.37 5.70 29.85 0.17 -2.20 16 7 C 0.50 15.54 7.83 87.66 0.69 16.22 16 8 O -0.60 -24.93 15.98 -3.03 -0.05 -24.98 16 9 N -0.71 -22.30 5.56 -463.05 -2.57 -24.87 16 10 C 0.12 4.85 6.00 86.38 0.52 5.37 16 11 C 0.14 6.25 5.45 86.38 0.47 6.72 16 12 N -0.57 -27.24 2.78 -678.05 -1.88 -29.12 16 13 C -0.26 -14.12 8.63 84.03 0.73 -13.39 16 14 H 0.06 3.11 6.55 -2.91 -0.02 3.09 16 15 C -0.03 -1.67 4.96 84.86 0.42 -1.25 16 16 N -0.91 -50.08 11.33 21.65 0.25 -49.83 16 17 Si 0.95 44.23 29.61 68.60 2.03 46.26 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 C 0.10 4.01 6.56 44.99 0.30 4.31 16 22 C -0.19 -7.06 9.80 30.62 0.30 -6.76 16 23 C -0.21 -8.16 10.36 30.62 0.32 -7.84 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.35 8.10 -2.38 -0.02 1.33 16 30 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 31 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.41 10.15 8.47 -92.71 -0.79 9.36 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 4.03 5.35 -2.39 -0.01 4.02 16 37 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 38 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 39 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 40 H 0.07 3.18 6.37 -2.39 -0.02 3.16 16 41 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -70.97 365.01 3.76 -67.20 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.21 Total: 24.44 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.78 Total: -9.10 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.21 Total: -103.82 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.97 3.76 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317554202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.447 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds