Wall clock time and date at job start Tue Mar 31 2020 00:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00125 * 2 1 4 4 C 1.53001 * 109.47124 * 125.94031 * 3 2 1 5 5 C 1.53001 * 109.46996 * 173.44717 * 4 3 2 6 6 C 1.50698 * 109.47124 * 294.51829 * 5 4 3 7 7 C 1.30997 * 119.99881 * 125.00233 * 6 5 4 8 8 C 1.50698 * 109.47524 * 293.44823 * 4 3 2 9 9 O 1.21277 * 120.00214 * 240.00114 * 8 4 3 10 10 N 1.34776 * 119.99758 * 60.00019 * 8 4 3 11 11 C 1.46498 * 119.99850 * 180.02562 * 10 8 4 12 12 H 1.09003 * 110.88593 * 325.69478 * 11 10 8 13 13 C 1.55161 * 111.00554 * 201.81764 * 11 10 8 14 14 C 1.54327 * 102.94152 * 277.39005 * 13 11 10 15 15 N 1.47020 * 107.26865 * 337.80320 * 14 13 11 16 16 C 1.36945 * 125.64436 * 178.98692 * 15 14 13 17 17 H 1.07999 * 119.99658 * 179.97438 * 16 15 14 18 18 C 1.38807 * 120.00186 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46984 * 89.99510 * 20 18 16 22 22 H 1.48495 * 109.47223 * 209.99851 * 20 18 16 23 23 H 1.48503 * 109.46974 * 330.00232 * 20 18 16 24 24 C 1.47424 * 108.70637 * 358.94052 * 15 14 13 25 25 H 1.08003 * 120.00562 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99979 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99979 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47330 * 5.94574 * 3 2 1 29 29 H 1.08999 * 109.47301 * 245.94175 * 3 2 1 30 30 H 1.09000 * 109.47121 * 53.45229 * 4 3 2 31 31 H 1.08997 * 109.47388 * 54.51783 * 5 4 3 32 32 H 1.09002 * 109.46898 * 174.52217 * 5 4 3 33 33 H 1.07997 * 120.00208 * 304.99758 * 6 5 4 34 34 H 1.08003 * 120.00253 * 0.02562 * 7 6 5 35 35 H 1.08011 * 120.00096 * 179.97438 * 7 6 5 36 36 H 0.97000 * 120.00351 * 359.97438 * 10 8 4 37 37 H 1.09003 * 110.71741 * 35.75064 * 13 11 10 38 38 H 1.08995 * 110.72183 * 159.02124 * 13 11 10 39 39 H 1.08996 * 109.88535 * 97.22019 * 14 13 11 40 40 H 1.09001 * 109.88138 * 218.38740 * 14 13 11 41 41 H 0.97000 * 119.99522 * 180.02562 * 19 18 16 42 42 H 1.08990 * 110.36994 * 265.28927 * 24 15 14 43 43 H 1.09000 * 110.36359 * 142.96582 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0517 1.3234 1.1679 5 6 3.9293 2.5731 1.0738 6 6 4.7890 2.4915 -0.1612 7 6 4.7641 3.4610 -1.0418 8 6 2.2916 1.3402 2.4690 9 8 2.4374 2.2610 3.2447 10 7 1.4498 0.3318 2.7707 11 6 0.7104 0.3484 4.0353 12 1 1.3056 0.8025 4.8275 13 6 0.2547 -1.0808 4.4319 14 6 -1.0391 -1.2709 3.6123 15 7 -1.5469 0.0685 3.2815 16 6 -2.6694 0.3368 2.5443 17 1 -2.9601 1.3598 2.3561 18 6 -3.4336 -0.7060 2.0390 19 7 -3.0791 -1.9527 2.2680 20 14 -4.9651 -0.3401 1.0340 21 1 -4.6022 -0.2394 -0.4024 22 1 -5.9521 -1.4339 1.2198 23 1 -5.5585 0.9441 1.4858 24 6 -0.6484 1.0749 3.8757 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3600 2.1309 0.1065 29 1 2.6080 1.4103 -0.9384 30 1 3.6805 0.4340 1.1258 31 1 3.2960 3.4585 1.0177 32 1 4.5661 2.6372 1.9561 33 1 5.4256 1.6337 -0.3203 34 1 4.1279 4.3190 -0.8826 35 1 5.3806 3.4027 -1.9268 36 1 1.3329 -0.4045 2.1501 37 1 1.0046 -1.8181 4.1453 38 1 0.0462 -1.1365 5.5002 39 1 -0.8206 -1.8210 2.6970 40 1 -1.7772 -1.8114 4.2049 41 1 -3.6129 -2.6814 1.9146 42 1 -1.0250 1.3930 4.8477 43 1 -0.5447 1.9313 3.2094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318334318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:47 Heat of formation + Delta-G solvation = 17.767428 kcal Electronic energy + Delta-G solvation = -22809.569213 eV Core-core repulsion = 19663.128509 eV Total energy + Delta-G solvation = -3146.440705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.88164 -37.44702 -36.11432 -34.40628 -33.38892 -31.61220 -30.81493 -29.12144 -27.23103 -26.23620 -24.55256 -23.27956 -20.38175 -20.11534 -19.72549 -19.62515 -19.32784 -17.05770 -16.54973 -15.82606 -15.41364 -14.78906 -14.66961 -14.50140 -13.99519 -13.77318 -13.53989 -13.23729 -12.85461 -12.73045 -12.20122 -12.16010 -11.87790 -11.78859 -11.45480 -11.07818 -10.96522 -10.89674 -10.87023 -10.66226 -10.54974 -10.30936 -10.13492 -9.93769 -9.66637 -9.56952 -9.25085 -8.83664 -8.65622 -8.41325 -6.79569 -5.71240 -3.02740 2.19000 2.69749 3.06217 3.38059 3.45164 3.45815 3.67382 4.50090 4.77032 4.83856 5.03553 5.12376 5.28558 5.34543 5.44521 5.48842 5.50240 5.53884 5.63287 5.77099 5.81647 5.85977 5.87933 5.94184 6.10134 6.25144 6.25313 6.41490 6.51937 6.54238 6.57862 6.60215 6.70266 6.73518 7.08691 7.14307 7.17109 7.54468 7.57615 7.79958 8.03751 8.25350 8.68407 9.23089 9.83231 10.49973 11.40457 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.005474 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.977458 B = 5113.854476 C = 5888.273741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.214 4.214 3 C -0.075 4.075 4 C -0.098 4.098 5 C -0.076 4.076 6 C -0.147 4.147 7 C -0.198 4.198 8 C 0.516 3.484 9 O -0.556 6.556 10 N -0.700 5.700 11 C 0.126 3.874 12 H 0.085 0.915 13 C -0.155 4.155 14 C 0.178 3.822 15 N -0.599 5.599 16 C -0.217 4.217 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.904 3.096 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.127 3.873 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.024 0.976 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 3.172 -4.016 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.232 4.232 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.165 4.165 7 C -0.235 4.235 8 C 0.302 3.698 9 O -0.435 6.435 10 N -0.352 5.352 11 C 0.020 3.980 12 H 0.103 0.897 13 C -0.194 4.194 14 C 0.054 3.946 15 N -0.325 5.325 16 C -0.345 4.345 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.571 5.571 20 Si 0.735 3.265 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.209 1.209 24 C 0.000 4.000 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.638 3.690 -3.552 14.567 hybrid contribution -1.041 -0.345 -0.819 1.369 sum 12.596 3.345 -4.371 13.746 Atomic orbital electron populations 1.24002 0.95200 1.03053 0.93267 1.22716 0.96189 0.97462 1.06839 1.20652 0.97185 0.96521 0.96908 1.21299 0.97093 1.00256 0.93299 1.20568 0.96889 0.97371 0.96478 1.22967 0.98717 0.98839 0.95969 1.23838 1.01938 0.98962 0.98753 1.20487 0.79574 0.82028 0.87670 1.90647 1.66447 1.35197 1.51212 1.46115 1.42834 1.24704 1.21528 1.22107 0.92914 0.97379 0.85573 0.89696 1.23222 1.00214 0.94888 1.01051 1.21135 0.89685 0.87481 0.96341 1.44407 1.26978 1.00225 1.60939 1.18985 0.99170 0.92457 1.23910 0.90832 1.24688 0.99036 0.95296 1.01161 1.69950 1.39870 0.97397 1.49861 0.86229 0.83087 0.77052 0.80102 1.21707 1.21810 1.20870 1.21902 0.88746 0.92883 0.96460 0.87728 0.88637 0.87709 0.91321 0.90445 0.88833 0.90816 0.90138 0.87470 0.88583 0.88720 0.75839 0.91843 0.91105 0.93647 0.93952 0.93940 0.95799 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 13.85 29.02 0.40 -1.58 16 2 C -0.21 -2.95 6.75 -36.03 -0.24 -3.20 16 3 C -0.08 -0.95 5.02 -27.88 -0.14 -1.09 16 4 C -0.10 -1.24 2.26 -91.77 -0.21 -1.45 16 5 C -0.08 -0.90 4.48 -27.88 -0.13 -1.02 16 6 C -0.15 -1.43 8.42 -36.03 -0.30 -1.73 16 7 C -0.20 -1.82 14.32 29.02 0.42 -1.40 16 8 C 0.52 8.47 7.14 -10.99 -0.08 8.39 16 9 O -0.56 -10.82 15.60 5.56 0.09 -10.74 16 10 N -0.70 -11.66 4.76 -51.73 -0.25 -11.91 16 11 C 0.13 2.29 3.37 -65.78 -0.22 2.06 16 12 H 0.09 1.52 7.63 -51.93 -0.40 1.12 16 13 C -0.15 -2.75 6.53 -24.89 -0.16 -2.92 16 14 C 0.18 4.04 5.36 -3.06 -0.02 4.03 16 15 N -0.60 -14.42 3.39 -170.08 -0.58 -15.00 16 16 C -0.22 -5.75 10.28 -15.06 -0.15 -5.91 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -25.58 10.31 55.49 0.57 -25.01 16 20 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 2.70 6.93 -2.53 -0.02 2.69 16 25 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 26 H 0.10 1.74 7.84 -52.49 -0.41 1.32 16 27 H 0.10 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 29 H 0.08 0.86 7.20 -51.93 -0.37 0.49 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 32 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 33 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.10 0.89 7.84 -52.48 -0.41 0.48 16 35 H 0.09 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.40 6.52 5.74 -40.82 -0.23 6.29 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.11 7.38 -51.93 -0.38 0.73 16 40 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 41 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -29.03 348.90 -8.05 -37.09 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.17 Total: 7.19 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.95 Total: -3.39 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.25 Total: -51.92 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.03 -8.05 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318334318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.854 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds