Wall clock time and date at job start Tue Mar 31 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00125 * 2 1 4 4 C 1.53001 * 109.47124 * 125.94031 * 3 2 1 5 5 C 1.53001 * 109.46996 * 173.44717 * 4 3 2 6 6 C 1.50698 * 109.47124 * 294.51829 * 5 4 3 7 7 C 1.30997 * 119.99881 * 125.00233 * 6 5 4 8 8 C 1.50698 * 109.47524 * 293.44823 * 4 3 2 9 9 O 1.21277 * 120.00214 * 240.00114 * 8 4 3 10 10 N 1.34776 * 119.99758 * 60.00019 * 8 4 3 11 11 C 1.46498 * 119.99850 * 180.02562 * 10 8 4 12 12 H 1.09003 * 110.88593 * 325.69478 * 11 10 8 13 13 C 1.55161 * 111.00554 * 201.81764 * 11 10 8 14 14 C 1.54327 * 102.94152 * 277.39005 * 13 11 10 15 15 N 1.47020 * 107.26865 * 337.80320 * 14 13 11 16 16 C 1.36945 * 125.64436 * 178.98692 * 15 14 13 17 17 H 1.07999 * 119.99658 * 179.97438 * 16 15 14 18 18 C 1.38807 * 120.00186 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00169 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46984 * 89.99510 * 20 18 16 22 22 H 1.48495 * 109.47223 * 209.99851 * 20 18 16 23 23 H 1.48503 * 109.46974 * 330.00232 * 20 18 16 24 24 C 1.47424 * 108.70637 * 358.94052 * 15 14 13 25 25 H 1.08003 * 120.00562 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99979 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99979 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47330 * 5.94574 * 3 2 1 29 29 H 1.08999 * 109.47301 * 245.94175 * 3 2 1 30 30 H 1.09000 * 109.47121 * 53.45229 * 4 3 2 31 31 H 1.08997 * 109.47388 * 54.51783 * 5 4 3 32 32 H 1.09002 * 109.46898 * 174.52217 * 5 4 3 33 33 H 1.07997 * 120.00208 * 304.99758 * 6 5 4 34 34 H 1.08003 * 120.00253 * 0.02562 * 7 6 5 35 35 H 1.08011 * 120.00096 * 179.97438 * 7 6 5 36 36 H 0.97000 * 120.00351 * 359.97438 * 10 8 4 37 37 H 1.09003 * 110.71741 * 35.75064 * 13 11 10 38 38 H 1.08995 * 110.72183 * 159.02124 * 13 11 10 39 39 H 1.08996 * 109.88535 * 97.22019 * 14 13 11 40 40 H 1.09001 * 109.88138 * 218.38740 * 14 13 11 41 41 H 0.97000 * 119.99522 * 180.02562 * 19 18 16 42 42 H 1.08990 * 110.36994 * 265.28927 * 24 15 14 43 43 H 1.09000 * 110.36359 * 142.96582 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0517 1.3234 1.1679 5 6 3.9293 2.5731 1.0738 6 6 4.7890 2.4915 -0.1612 7 6 4.7641 3.4610 -1.0418 8 6 2.2916 1.3402 2.4690 9 8 2.4374 2.2610 3.2447 10 7 1.4498 0.3318 2.7707 11 6 0.7104 0.3484 4.0353 12 1 1.3056 0.8025 4.8275 13 6 0.2547 -1.0808 4.4319 14 6 -1.0391 -1.2709 3.6123 15 7 -1.5469 0.0685 3.2815 16 6 -2.6694 0.3368 2.5443 17 1 -2.9601 1.3598 2.3561 18 6 -3.4336 -0.7060 2.0390 19 7 -3.0791 -1.9527 2.2680 20 14 -4.9651 -0.3401 1.0340 21 1 -4.6022 -0.2394 -0.4024 22 1 -5.9521 -1.4339 1.2198 23 1 -5.5585 0.9441 1.4858 24 6 -0.6484 1.0749 3.8757 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3600 2.1309 0.1065 29 1 2.6080 1.4103 -0.9384 30 1 3.6805 0.4340 1.1258 31 1 3.2960 3.4585 1.0177 32 1 4.5661 2.6372 1.9561 33 1 5.4256 1.6337 -0.3203 34 1 4.1279 4.3190 -0.8826 35 1 5.3806 3.4027 -1.9268 36 1 1.3329 -0.4045 2.1501 37 1 1.0046 -1.8181 4.1453 38 1 0.0462 -1.1365 5.5002 39 1 -0.8206 -1.8210 2.6970 40 1 -1.7772 -1.8114 4.2049 41 1 -3.6129 -2.6814 1.9146 42 1 -1.0250 1.3930 4.8477 43 1 -0.5447 1.9313 3.2094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318334318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:46 Heat of formation + Delta-G solvation = 1.471317 kcal Electronic energy + Delta-G solvation = -22810.275866 eV Core-core repulsion = 19663.128509 eV Total energy + Delta-G solvation = -3147.147357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22203 -39.02790 -37.29750 -35.64276 -34.91038 -33.35165 -31.89178 -30.88504 -28.93074 -27.27918 -26.44711 -24.52991 -21.99944 -21.62416 -20.98720 -20.73540 -20.46509 -18.86422 -17.94686 -17.30181 -16.61579 -16.48933 -15.92585 -15.73119 -15.70141 -15.18224 -14.91667 -14.58613 -14.12955 -13.90779 -13.77008 -13.60153 -13.47915 -13.18589 -12.87987 -12.79207 -12.54901 -12.24549 -12.10863 -12.02156 -11.88656 -11.85761 -11.76538 -11.70985 -11.56251 -10.75883 -10.66049 -10.29923 -9.99417 -9.86911 -8.78783 -7.79171 -5.11239 1.39633 1.45754 1.47009 1.49825 1.54263 1.75542 2.38519 2.51611 3.40292 3.70457 3.71282 3.76241 3.88396 4.02373 4.13203 4.20586 4.33088 4.36759 4.41727 4.51765 4.55521 4.70942 4.78739 4.79152 4.91551 4.92953 5.03368 5.05699 5.08168 5.11541 5.20581 5.31553 5.48960 5.65795 5.72774 5.81187 5.81637 5.83059 5.92593 5.98183 6.24682 6.69714 7.17927 7.35423 7.83101 8.48165 9.30492 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.005474 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.977458 B = 5113.854476 C = 5888.273741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.178 4.178 3 C -0.070 4.070 4 C -0.088 4.088 5 C -0.071 4.071 6 C -0.152 4.152 7 C -0.195 4.195 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.698 5.698 11 C 0.137 3.863 12 H 0.096 0.904 13 C -0.137 4.137 14 C 0.188 3.812 15 N -0.610 5.610 16 C -0.227 4.227 17 H 0.066 0.934 18 C -0.048 4.048 19 N -0.941 5.941 20 Si 0.960 3.040 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.279 1.279 24 C 0.126 3.874 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.407 0.593 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.007 0.993 41 H 0.245 0.755 42 H 0.025 0.975 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.065 2.967 -4.754 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.196 4.196 3 C -0.108 4.108 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.169 4.169 7 C -0.232 4.232 8 C 0.300 3.700 9 O -0.469 6.469 10 N -0.350 5.350 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.175 4.175 14 C 0.063 3.937 15 N -0.336 5.336 16 C -0.356 4.356 17 H 0.084 0.916 18 C -0.242 4.242 19 N -0.590 5.590 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.001 4.001 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.245 0.755 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 15.984 3.497 -4.293 16.916 hybrid contribution -1.740 -0.196 -0.585 1.846 sum 14.245 3.302 -4.878 15.414 Atomic orbital electron populations 1.23617 0.96305 1.00755 0.98013 1.22975 0.95053 0.99140 1.02397 1.20646 0.96883 0.94950 0.98300 1.21313 0.96867 1.02184 0.90540 1.20491 0.96658 0.96101 0.97607 1.22945 0.99018 1.00046 0.94940 1.24012 1.01581 0.98414 0.99185 1.21213 0.79169 0.81057 0.88596 1.90635 1.67423 1.36230 1.52591 1.46129 1.42649 1.25070 1.21167 1.21935 0.91373 0.96961 0.86661 0.88564 1.23093 0.97992 0.95265 1.01171 1.20911 0.91050 0.86231 0.95505 1.44550 1.26838 1.01556 1.60669 1.19149 1.00129 0.92190 1.24108 0.91606 1.25275 1.01382 0.95232 1.02281 1.70123 1.40523 0.97782 1.50592 0.85363 0.80123 0.76678 0.78898 1.21350 1.22183 1.20454 1.21983 0.90318 0.92161 0.95635 0.90255 0.90984 0.85013 0.93392 0.87651 0.85673 0.92642 0.90809 0.85345 0.89274 0.86861 0.75450 0.89046 0.89423 0.95825 0.97479 0.94556 0.95730 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 13.85 67.78 0.94 -4.18 16 2 C -0.18 -4.59 6.75 25.65 0.17 -4.42 16 3 C -0.07 -1.63 5.02 29.85 0.15 -1.48 16 4 C -0.09 -1.98 2.26 -11.54 -0.03 -2.01 16 5 C -0.07 -1.53 4.48 29.85 0.13 -1.40 16 6 C -0.15 -2.44 8.42 25.65 0.22 -2.23 16 7 C -0.20 -3.01 14.32 67.78 0.97 -2.04 16 8 C 0.51 15.98 7.14 87.66 0.63 16.61 16 9 O -0.59 -22.36 15.60 -3.02 -0.05 -22.41 16 10 N -0.70 -22.24 4.76 -435.96 -2.07 -24.31 16 11 C 0.14 4.79 3.37 46.39 0.16 4.95 16 12 H 0.10 3.24 7.63 -2.39 -0.02 3.22 16 13 C -0.14 -4.62 6.53 31.79 0.21 -4.42 16 14 C 0.19 8.61 5.36 86.73 0.47 9.07 16 15 N -0.61 -30.00 3.39 -692.00 -2.35 -32.35 16 16 C -0.23 -12.36 10.28 84.03 0.86 -11.50 16 17 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 18 C -0.05 -2.63 5.49 84.86 0.47 -2.17 16 19 N -0.94 -53.52 10.31 21.65 0.22 -53.30 16 20 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 C 0.13 5.38 6.93 86.86 0.60 5.99 16 25 H 0.08 3.11 8.06 -2.91 -0.02 3.09 16 26 H 0.07 2.77 7.84 -2.91 -0.02 2.75 16 27 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.05 1.33 7.79 -2.38 -0.02 1.32 16 29 H 0.11 1.96 7.20 -2.39 -0.02 1.94 16 30 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.39 7.79 -2.39 -0.02 1.37 16 32 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 33 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.09 1.49 7.84 -2.91 -0.02 1.46 16 35 H 0.11 1.35 8.06 -2.90 -0.02 1.32 16 36 H 0.41 12.43 5.74 -92.71 -0.53 11.89 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.02 1.18 7.38 -2.39 -0.02 1.16 16 40 H 0.01 0.37 7.51 -2.39 -0.02 0.35 16 41 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -64.65 348.90 4.15 -60.49 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.43 Total: 23.91 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.94 Total: 0.78 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.20 Total: -109.96 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.65 4.15 -60.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318334318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.964 kcal (2) G-P(sol) polarization free energy of solvation -64.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds