Wall clock time and date at job start Tue Mar 31 2020 00:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47132 * 274.95840 * 4 3 2 6 6 C 1.52997 * 109.46943 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99351 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00481 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99419 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.09002 * 110.91399 * 350.51772 * 11 9 7 13 13 C 1.55151 * 111.00623 * 226.61211 * 11 9 7 14 14 C 1.54320 * 102.94334 * 277.43135 * 13 11 9 15 15 N 1.47027 * 107.27334 * 337.80272 * 14 13 11 16 16 C 1.36929 * 125.65463 * 178.97337 * 15 14 13 17 17 H 1.08003 * 120.00350 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99970 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99766 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47252 * 89.99968 * 20 18 16 22 22 H 1.48506 * 109.47067 * 209.99714 * 20 18 16 23 23 H 1.48505 * 109.47134 * 329.99724 * 20 18 16 24 24 C 1.47423 * 108.69771 * 358.94803 * 15 14 13 25 25 H 1.08994 * 109.46842 * 85.04197 * 1 2 3 26 26 H 1.08998 * 109.46620 * 205.04201 * 1 2 3 27 27 H 1.08998 * 109.46922 * 325.04088 * 1 2 3 28 28 H 1.09002 * 109.47064 * 154.95618 * 4 3 2 29 29 H 1.09003 * 109.47349 * 34.96062 * 4 3 2 30 30 H 1.09000 * 109.46813 * 59.99973 * 5 4 3 31 31 H 1.08993 * 109.46806 * 299.99906 * 5 4 3 32 32 H 1.09000 * 109.47246 * 60.00412 * 6 5 4 33 33 H 1.09003 * 109.47587 * 300.00251 * 6 5 4 34 34 H 1.09001 * 109.47209 * 263.94367 * 10 9 7 35 35 H 1.09003 * 109.47593 * 23.95065 * 10 9 7 36 36 H 1.09009 * 109.46707 * 143.94898 * 10 9 7 37 37 H 1.08995 * 110.71977 * 159.06502 * 13 11 9 38 38 H 1.09001 * 110.72028 * 35.79299 * 13 11 9 39 39 H 1.09005 * 109.88400 * 218.38885 * 14 13 11 40 40 H 1.09003 * 109.88629 * 97.22164 * 14 13 11 41 41 H 0.96994 * 120.00135 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36886 * 142.96549 * 24 15 14 43 43 H 1.09005 * 110.36401 * 265.28278 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6282 -0.1224 1.4371 6 6 6.1581 -0.1217 1.4370 7 6 6.6607 -0.2434 2.8526 8 8 5.8726 -0.3233 3.7710 9 7 7.9857 -0.2644 3.0979 10 6 8.9376 -0.1684 1.9884 11 6 8.4742 -0.3822 4.4740 12 1 7.6571 -0.2748 5.1874 13 6 9.5977 0.6501 4.7556 14 6 10.8543 -0.0434 4.1888 15 7 10.5759 -1.4865 4.1486 16 6 11.4316 -2.4520 3.6899 17 1 11.1320 -3.4896 3.7026 18 6 12.6844 -2.0973 3.2084 19 7 13.0494 -0.8328 3.1924 20 14 13.8521 -3.4144 2.5833 21 1 13.6279 -3.6258 1.1306 22 1 15.2543 -2.9809 2.8098 23 1 13.6025 -4.6838 3.3126 24 6 9.2228 -1.7219 4.6846 25 1 -0.3633 0.0888 -1.0238 26 1 -0.3632 -0.9311 0.4350 27 1 -0.3633 0.8422 0.5888 28 1 4.4805 0.9332 -0.4350 29 1 4.4822 -0.8401 -0.5889 30 1 4.2656 -1.0538 1.8720 31 1 4.2641 0.7195 2.0259 32 1 6.5210 0.8095 1.0019 33 1 6.5219 -0.9638 0.8482 34 1 9.2562 -1.1687 1.6953 35 1 8.4597 0.3235 1.1411 36 1 9.8052 0.4116 2.3032 37 1 9.7027 0.8232 5.8266 38 1 9.4030 1.5850 4.2300 39 1 11.7092 0.1512 4.8366 40 1 11.0580 0.3230 3.1826 41 1 13.9246 -0.5849 2.8557 42 1 8.7303 -2.5225 4.1330 43 1 9.2724 -1.9660 5.7458 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318424786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:41 Heat of formation + Delta-G solvation = 32.937223 kcal Electronic energy + Delta-G solvation = -21576.289899 eV Core-core repulsion = 18430.507006 eV Total energy + Delta-G solvation = -3145.782893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85305 -37.56781 -35.72445 -34.24877 -33.38606 -32.11294 -29.87006 -29.12900 -28.10243 -26.65711 -25.69125 -24.32485 -22.49484 -20.32443 -20.09958 -18.47745 -17.20519 -16.91548 -16.50899 -16.00032 -15.50502 -14.73099 -14.67596 -14.18923 -13.97350 -13.80890 -13.79708 -13.52055 -13.08595 -12.93348 -12.42180 -12.19684 -12.08529 -11.90063 -11.76102 -11.60847 -11.35472 -10.97611 -10.94039 -10.90692 -10.70572 -10.23894 -10.15573 -9.95575 -9.87670 -9.81643 -9.67365 -9.31703 -8.69118 -8.13167 -6.82899 -5.75736 -3.08283 2.56190 2.60082 2.94135 3.36461 3.40920 3.43089 3.44359 4.10030 4.46855 4.73462 4.93419 4.97943 5.22749 5.27097 5.34639 5.38405 5.42886 5.44554 5.45080 5.47452 5.56876 5.57840 5.69531 5.75765 5.82023 5.88572 6.06252 6.13096 6.20802 6.24330 6.35861 6.47271 6.51939 6.61513 6.68557 7.09460 7.51696 7.53688 7.53937 7.76744 7.87871 8.20872 8.52434 9.18367 9.78105 10.44563 11.36066 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.003250 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.855083 B = 8612.203144 C = 9106.012306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.008 4.008 5 C -0.097 4.097 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.557 6.557 9 N -0.589 5.589 10 C 0.070 3.930 11 C 0.123 3.877 12 H 0.097 0.903 13 C -0.157 4.157 14 C 0.173 3.827 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.126 3.874 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.041 0.959 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 4.316 -6.322 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.436 6.436 9 N -0.320 5.320 10 C -0.072 4.072 11 C 0.019 3.981 12 H 0.115 0.885 13 C -0.196 4.196 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.001 4.001 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.367 4.255 -5.924 17.919 hybrid contribution 0.898 -0.714 -0.403 1.216 sum -15.469 3.542 -6.328 17.085 Atomic orbital electron populations 1.18817 0.84825 1.02970 1.02758 1.22397 0.93969 1.02273 1.01751 1.22388 0.93690 1.00853 1.01002 1.18741 0.84336 1.03219 0.98192 1.21271 0.93311 1.04100 0.94845 1.21684 0.96763 1.04375 0.95040 1.20595 0.82053 0.76370 0.91246 1.90649 1.55107 1.51274 1.46610 1.47720 1.05367 1.70970 1.07993 1.22161 0.93767 1.03499 0.87766 1.22238 0.96176 0.97159 0.82553 0.88459 1.23249 0.97391 0.97848 1.01072 1.21337 0.91581 0.82956 0.99293 1.44478 1.11935 1.02965 1.73538 1.19035 0.94413 0.87863 1.33909 0.90594 1.24762 0.97558 0.96389 1.01680 1.69944 1.20647 1.14392 1.52126 0.86140 0.80466 0.80670 0.78613 1.21658 1.21732 1.20800 1.21908 0.87018 0.94464 0.96747 0.90433 0.90323 0.90340 0.89567 0.89506 0.90880 0.90936 0.88859 0.88737 0.91632 0.92556 0.88766 0.91259 0.91797 0.93992 0.92716 0.93771 0.94049 0.95407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.28 14.13 -37.12 -0.52 -2.81 16 3 C -0.18 -2.11 13.34 -37.12 -0.50 -2.60 16 4 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 5 C -0.10 -1.13 4.46 -26.73 -0.12 -1.24 16 6 C -0.14 -1.61 4.17 -27.88 -0.12 -1.73 16 7 C 0.51 8.27 7.67 -10.98 -0.08 8.19 16 8 O -0.56 -10.78 15.39 5.55 0.09 -10.70 16 9 N -0.59 -10.04 2.91 -171.48 -0.50 -10.54 16 10 C 0.07 1.14 9.05 59.85 0.54 1.68 16 11 C 0.12 2.28 3.64 -65.79 -0.24 2.04 16 12 H 0.10 1.80 7.07 -51.93 -0.37 1.43 16 13 C -0.16 -2.87 6.07 -24.90 -0.15 -3.02 16 14 C 0.17 3.93 4.35 -3.06 -0.01 3.92 16 15 N -0.60 -14.63 2.87 -170.07 -0.49 -15.11 16 16 C -0.22 -5.99 10.28 -15.06 -0.15 -6.15 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -25.82 10.31 55.49 0.57 -25.25 16 20 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.13 2.64 6.76 -2.53 -0.02 2.62 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 33 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 36 H 0.09 1.73 4.19 -51.92 -0.22 1.51 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 40 H 0.06 1.32 5.10 -51.93 -0.26 1.06 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -31.38 347.09 -8.38 -39.76 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.98 Total: -0.31 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.28 Total: 0.43 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.41 Total: -50.90 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.38 -8.38 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318424786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.697 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds