Wall clock time and date at job start Tue Mar 31 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47132 * 274.95840 * 4 3 2 6 6 C 1.52997 * 109.46943 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99351 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00481 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99419 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00148 * 179.97438 * 9 7 6 12 12 H 1.09002 * 110.91399 * 350.51772 * 11 9 7 13 13 C 1.55151 * 111.00623 * 226.61211 * 11 9 7 14 14 C 1.54320 * 102.94334 * 277.43135 * 13 11 9 15 15 N 1.47027 * 107.27334 * 337.80272 * 14 13 11 16 16 C 1.36929 * 125.65463 * 178.97337 * 15 14 13 17 17 H 1.08003 * 120.00350 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99970 * 359.97438 * 16 15 14 19 19 N 1.31620 * 119.99766 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47252 * 89.99968 * 20 18 16 22 22 H 1.48506 * 109.47067 * 209.99714 * 20 18 16 23 23 H 1.48505 * 109.47134 * 329.99724 * 20 18 16 24 24 C 1.47423 * 108.69771 * 358.94803 * 15 14 13 25 25 H 1.08994 * 109.46842 * 85.04197 * 1 2 3 26 26 H 1.08998 * 109.46620 * 205.04201 * 1 2 3 27 27 H 1.08998 * 109.46922 * 325.04088 * 1 2 3 28 28 H 1.09002 * 109.47064 * 154.95618 * 4 3 2 29 29 H 1.09003 * 109.47349 * 34.96062 * 4 3 2 30 30 H 1.09000 * 109.46813 * 59.99973 * 5 4 3 31 31 H 1.08993 * 109.46806 * 299.99906 * 5 4 3 32 32 H 1.09000 * 109.47246 * 60.00412 * 6 5 4 33 33 H 1.09003 * 109.47587 * 300.00251 * 6 5 4 34 34 H 1.09001 * 109.47209 * 263.94367 * 10 9 7 35 35 H 1.09003 * 109.47593 * 23.95065 * 10 9 7 36 36 H 1.09009 * 109.46707 * 143.94898 * 10 9 7 37 37 H 1.08995 * 110.71977 * 159.06502 * 13 11 9 38 38 H 1.09001 * 110.72028 * 35.79299 * 13 11 9 39 39 H 1.09005 * 109.88400 * 218.38885 * 14 13 11 40 40 H 1.09003 * 109.88629 * 97.22164 * 14 13 11 41 41 H 0.96994 * 120.00135 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36886 * 142.96549 * 24 15 14 43 43 H 1.09005 * 110.36401 * 265.28278 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6282 -0.1224 1.4371 6 6 6.1581 -0.1217 1.4370 7 6 6.6607 -0.2434 2.8526 8 8 5.8726 -0.3233 3.7710 9 7 7.9857 -0.2644 3.0979 10 6 8.9376 -0.1684 1.9884 11 6 8.4742 -0.3822 4.4740 12 1 7.6571 -0.2748 5.1874 13 6 9.5977 0.6501 4.7556 14 6 10.8543 -0.0434 4.1888 15 7 10.5759 -1.4865 4.1486 16 6 11.4316 -2.4520 3.6899 17 1 11.1320 -3.4896 3.7026 18 6 12.6844 -2.0973 3.2084 19 7 13.0494 -0.8328 3.1924 20 14 13.8521 -3.4144 2.5833 21 1 13.6279 -3.6258 1.1306 22 1 15.2543 -2.9809 2.8098 23 1 13.6025 -4.6838 3.3126 24 6 9.2228 -1.7219 4.6846 25 1 -0.3633 0.0888 -1.0238 26 1 -0.3632 -0.9311 0.4350 27 1 -0.3633 0.8422 0.5888 28 1 4.4805 0.9332 -0.4350 29 1 4.4822 -0.8401 -0.5889 30 1 4.2656 -1.0538 1.8720 31 1 4.2641 0.7195 2.0259 32 1 6.5210 0.8095 1.0019 33 1 6.5219 -0.9638 0.8482 34 1 9.2562 -1.1687 1.6953 35 1 8.4597 0.3235 1.1411 36 1 9.8052 0.4116 2.3032 37 1 9.7027 0.8232 5.8266 38 1 9.4030 1.5850 4.2300 39 1 11.7092 0.1512 4.8366 40 1 11.0580 0.3230 3.1826 41 1 13.9246 -0.5849 2.8557 42 1 8.7303 -2.5225 4.1330 43 1 9.2724 -1.9660 5.7458 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318424786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:40 Heat of formation + Delta-G solvation = 15.916654 kcal Electronic energy + Delta-G solvation = -21577.027966 eV Core-core repulsion = 18430.507006 eV Total energy + Delta-G solvation = -3146.520960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23490 -39.12374 -36.60771 -35.84079 -34.32766 -33.81839 -31.24899 -30.45623 -29.61499 -27.56531 -27.19849 -26.09359 -23.56213 -21.96761 -21.61636 -19.82567 -18.93969 -18.31632 -17.57900 -17.05948 -16.78601 -16.65250 -15.82408 -15.63820 -15.47555 -14.70502 -14.62754 -14.57022 -14.19048 -14.13038 -13.85114 -13.50605 -13.40611 -13.28220 -13.19141 -12.99326 -12.83743 -12.76291 -12.35340 -12.28875 -12.03590 -11.93218 -11.83749 -11.75566 -11.53488 -10.79305 -10.66329 -10.56983 -10.55942 -9.63487 -8.78746 -7.82018 -5.15910 1.48537 1.49492 1.57699 1.66672 1.72944 1.79722 2.12384 2.51411 3.36761 3.38413 3.59999 3.69342 3.90102 4.03796 4.08792 4.11774 4.31136 4.35647 4.51495 4.62082 4.64724 4.67464 4.73305 4.77166 4.78479 4.82971 4.85911 4.88721 4.90151 4.99543 5.04380 5.15258 5.18880 5.21666 5.33629 5.48839 5.63780 5.69306 5.83769 6.22644 6.55160 6.74657 7.14242 7.22188 7.79014 8.44462 9.27951 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.003250 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.855083 B = 8612.203144 C = 9106.012306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.218 4.218 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.089 4.089 6 C -0.130 4.130 7 C 0.505 3.495 8 O -0.591 6.591 9 N -0.593 5.593 10 C 0.079 3.921 11 C 0.132 3.868 12 H 0.101 0.899 13 C -0.140 4.140 14 C 0.183 3.817 15 N -0.616 5.616 16 C -0.236 4.236 17 H 0.074 0.926 18 C -0.056 4.056 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.277 1.277 24 C 0.125 3.875 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.004 0.996 40 H 0.040 0.960 41 H 0.247 0.753 42 H 0.034 0.966 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 4.635 -7.735 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.218 4.218 3 C -0.215 4.215 4 C -0.039 4.039 5 C -0.127 4.127 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.473 6.473 9 N -0.324 5.324 10 C -0.063 4.063 11 C 0.027 3.973 12 H 0.119 0.881 13 C -0.179 4.179 14 C 0.059 3.941 15 N -0.342 5.342 16 C -0.365 4.365 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.202 1.202 24 C -0.002 4.002 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.022 0.978 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.567 4.569 -7.343 19.580 hybrid contribution 1.190 -0.842 0.075 1.460 sum -16.377 3.727 -7.267 18.300 Atomic orbital electron populations 1.19053 0.82618 1.03970 1.04204 1.23418 0.95450 1.01891 1.01045 1.23065 0.94871 1.01605 1.01947 1.18775 0.83327 1.04942 0.96868 1.21145 0.93289 1.02288 0.95977 1.21734 0.96508 1.06702 0.91978 1.21415 0.81186 0.74933 0.92858 1.90637 1.55756 1.52639 1.48231 1.47804 1.06030 1.71128 1.07441 1.22061 0.93398 1.02074 0.88753 1.22038 0.95886 0.95352 0.84022 0.88059 1.23107 0.94837 0.98071 1.01857 1.21126 0.92388 0.82712 0.97922 1.44655 1.12862 1.03291 1.73426 1.19293 0.95081 0.88434 1.33706 0.90831 1.25467 0.98942 0.98238 1.02329 1.70130 1.20588 1.15820 1.52862 0.85180 0.78015 0.78525 0.78179 1.21028 1.22282 1.20233 1.21990 0.85904 0.95877 0.96420 0.88697 0.89313 0.89191 0.87508 0.87966 0.93062 0.92490 0.85774 0.86805 0.94123 0.88057 0.90889 0.90001 0.89792 0.97815 0.94178 0.94335 0.94800 0.95223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.54 10.32 70.18 0.72 0.19 16 2 C -0.22 -4.63 14.13 31.13 0.44 -4.19 16 3 C -0.21 -4.79 13.34 31.13 0.42 -4.37 16 4 C 0.00 -0.05 5.70 28.79 0.16 0.12 16 5 C -0.09 -1.91 4.46 30.59 0.14 -1.77 16 6 C -0.13 -2.63 4.17 29.85 0.12 -2.51 16 7 C 0.51 15.51 7.67 87.66 0.67 16.19 16 8 O -0.59 -22.38 15.39 -3.04 -0.05 -22.42 16 9 N -0.59 -19.29 2.91 -814.82 -2.37 -21.66 16 10 C 0.08 2.44 9.05 127.77 1.16 3.60 16 11 C 0.13 4.77 3.64 46.38 0.17 4.93 16 12 H 0.10 3.64 7.07 -2.39 -0.02 3.62 16 13 C -0.14 -4.99 6.07 31.78 0.19 -4.80 16 14 C 0.18 8.45 4.35 86.73 0.38 8.82 16 15 N -0.62 -30.26 2.87 -691.97 -1.98 -32.24 16 16 C -0.24 -12.78 10.28 84.04 0.86 -11.92 16 17 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.06 -3.07 5.49 84.86 0.47 -2.60 16 19 N -0.95 -53.77 10.31 21.65 0.22 -53.54 16 20 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.12 5.23 6.76 86.86 0.59 5.82 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.12 1.82 7.42 -2.39 -0.02 1.80 16 33 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.16 6.23 -2.39 -0.01 2.14 16 36 H 0.07 2.61 4.19 -2.38 -0.01 2.60 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 39 H 0.00 0.19 7.51 -2.38 -0.02 0.18 16 40 H 0.04 1.98 5.10 -2.39 -0.01 1.97 16 41 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.03 1.24 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -69.14 347.09 5.32 -63.82 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.99 Total: 12.08 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.49 Total: 7.50 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.13 Total: -107.45 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.14 5.32 -63.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318424786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.735 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds