Wall clock time and date at job start Tue Mar 31 2020 00:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 194.91391 * 3 2 1 5 5 C 1.53006 * 109.47005 * 79.78670 * 4 3 2 6 6 C 1.53005 * 109.46574 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46634 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00030 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99765 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00315 * 359.97438 * 9 7 6 11 11 C 1.46506 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.09002 * 110.64034 * 1.67775 * 11 9 7 13 13 C 1.55149 * 110.72085 * 125.01972 * 11 9 7 14 14 C 1.54913 * 101.58081 * 153.86559 * 13 11 9 15 15 N 1.47422 * 104.83234 * 322.98715 * 14 13 11 16 16 C 1.36933 * 125.64968 * 204.09452 * 15 14 13 17 17 H 1.08004 * 120.00015 * 180.02562 * 16 15 14 18 18 C 1.38819 * 119.99966 * 0.04017 * 16 15 14 19 19 N 1.31610 * 119.99844 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46722 * 120.00371 * 20 18 16 23 23 H 1.48505 * 109.46725 * 239.99788 * 20 18 16 24 24 C 1.47022 * 108.70013 * 24.13136 * 15 14 13 25 25 H 1.09002 * 109.47051 * 265.29859 * 1 2 3 26 26 H 1.08994 * 109.47322 * 25.30383 * 1 2 3 27 27 H 1.09006 * 109.47003 * 145.30390 * 1 2 3 28 28 H 1.08991 * 109.47246 * 319.78720 * 4 3 2 29 29 H 1.08998 * 109.46959 * 199.78313 * 4 3 2 30 30 H 1.08991 * 109.47078 * 59.99947 * 5 4 3 31 31 H 1.08998 * 109.46971 * 299.99636 * 5 4 3 32 32 H 1.08991 * 109.47491 * 60.00164 * 6 5 4 33 33 H 1.08998 * 109.47145 * 299.99493 * 6 5 4 34 34 H 1.08994 * 109.47275 * 270.00864 * 10 9 7 35 35 H 1.08997 * 109.46397 * 30.00416 * 10 9 7 36 36 H 1.08994 * 109.47241 * 150.00451 * 10 9 7 37 37 H 1.09005 * 111.00403 * 271.93754 * 13 11 9 38 38 H 1.08993 * 111.00882 * 35.79071 * 13 11 9 39 39 H 1.09006 * 110.36719 * 204.14961 * 14 13 11 40 40 H 1.09007 * 110.45916 * 81.87684 * 14 13 11 41 41 H 0.97006 * 119.99935 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.88380 * 239.51983 * 24 15 14 43 43 H 1.09004 * 109.88423 * 118.35890 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 6 4.6284 -0.2535 -1.4195 6 6 6.1584 -0.2528 -1.4191 7 6 6.6611 -0.5037 -2.8175 8 8 5.8732 -0.6674 -3.7249 9 7 7.9862 -0.5471 -3.0595 10 6 8.9380 -0.3498 -1.9633 11 6 8.4750 -0.7915 -4.4188 12 1 7.6419 -0.8865 -5.1154 13 6 9.4430 0.3358 -4.8651 14 6 10.3176 -0.4009 -5.9102 15 7 10.4865 -1.7617 -5.3689 16 6 11.5150 -2.6161 -5.6643 17 1 11.5485 -3.5971 -5.2138 18 6 12.5149 -2.2212 -6.5426 19 7 12.4746 -1.0255 -7.0910 20 14 13.9176 -3.3871 -6.9460 21 1 13.7314 -4.6605 -6.2052 22 1 13.9292 -3.6611 -8.4055 23 1 15.2069 -2.7665 -6.5486 24 6 9.3673 -2.0499 -4.4601 25 1 -0.3633 -0.0842 1.0242 26 1 -0.3634 0.9290 -0.4392 27 1 -0.3633 -0.8450 -0.5850 28 1 4.4819 -0.7826 0.6636 29 1 4.4804 0.9691 0.3480 30 1 4.2644 0.5309 -2.0830 31 1 4.2659 -1.2208 -1.7673 32 1 6.5220 -1.0374 -0.7557 33 1 6.5212 0.7143 -1.0710 34 1 9.1738 0.7105 -1.8733 35 1 8.4974 -0.7045 -1.0316 36 1 9.8506 -0.9088 -2.1696 37 1 8.8974 1.1604 -5.3239 38 1 10.0467 0.6865 -4.0281 39 1 11.2854 0.0908 -6.0093 40 1 9.8103 -0.4364 -6.8744 41 1 13.1735 -0.7494 -7.7044 42 1 9.7470 -2.2680 -3.4619 43 1 8.7946 -2.8984 -4.8347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318424788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:44 Heat of formation + Delta-G solvation = 28.041714 kcal Electronic energy + Delta-G solvation = -21113.113784 eV Core-core repulsion = 17967.118606 eV Total energy + Delta-G solvation = -3145.995178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92855 -37.46210 -35.81767 -34.75818 -33.46836 -32.13952 -29.97587 -29.14010 -27.65329 -26.86302 -26.20024 -24.41231 -22.44378 -20.22356 -20.20375 -18.66753 -17.30321 -16.98350 -16.60957 -16.11720 -15.61972 -14.84114 -14.68378 -14.25189 -14.02156 -13.95325 -13.83248 -13.45043 -13.15639 -13.07607 -12.62917 -12.42794 -12.27498 -12.20107 -11.83647 -11.58294 -11.50001 -11.09714 -11.02124 -10.83972 -10.83219 -10.43827 -10.10114 -9.97064 -9.88267 -9.82045 -9.58486 -9.49706 -8.67930 -8.32715 -6.86124 -5.67298 -3.09651 2.49604 2.53835 2.78936 3.19458 3.38568 3.44226 3.46698 4.02774 4.47772 4.55865 4.81840 4.85685 5.10864 5.18767 5.23698 5.30528 5.35658 5.37714 5.40397 5.40960 5.44914 5.46635 5.55129 5.63024 5.73217 5.76978 5.81295 5.93148 5.97268 6.14157 6.26384 6.35379 6.54598 6.57355 6.72121 7.00620 7.47524 7.48944 7.60028 7.64465 7.83021 8.32041 8.37362 9.19488 9.80103 10.44482 11.36438 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.002652 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.475952 B =10553.930960 C =10573.697827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.182 4.182 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.546 6.546 9 N -0.602 5.602 10 C 0.074 3.926 11 C 0.125 3.875 12 H 0.102 0.898 13 C -0.151 4.151 14 C 0.153 3.847 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.129 3.871 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.015 0.985 41 H 0.252 0.748 42 H 0.028 0.972 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 4.491 16.034 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.178 4.178 7 C 0.298 3.702 8 O -0.424 6.424 9 N -0.334 5.334 10 C -0.069 4.069 11 C 0.022 3.978 12 H 0.120 0.880 13 C -0.190 4.190 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.002 3.998 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -15.281 4.378 15.424 22.148 hybrid contribution 0.805 -0.601 -0.205 1.025 sum -14.476 3.777 15.218 21.340 Atomic orbital electron populations 1.18832 0.84791 1.03036 1.02811 1.22418 0.93987 1.02073 1.01572 1.22350 0.93678 1.01039 1.01181 1.18717 0.84428 1.03011 0.98179 1.21291 0.93152 1.04071 0.95223 1.21701 0.97054 1.04060 0.95026 1.20627 0.82001 0.76592 0.90991 1.90688 1.54932 1.50082 1.46698 1.47899 1.05568 1.70410 1.09568 1.21801 0.94474 1.01627 0.88993 1.22237 0.97117 0.96497 0.81985 0.87974 1.23353 0.97817 0.96967 1.00889 1.21945 0.99510 0.84645 0.91155 1.44452 1.23475 1.14128 1.50866 1.19119 0.98666 0.95614 1.21589 0.90409 1.24804 0.99214 0.97274 0.99432 1.69795 1.34690 1.18274 1.34278 0.85982 0.81900 0.79669 0.77846 1.20525 1.21733 1.21730 1.21535 0.89526 0.94320 0.94429 0.90392 0.90304 0.90241 0.89580 0.89587 0.90798 0.90785 0.88744 0.88804 0.92614 0.91373 0.89933 0.92152 0.91748 0.87287 0.96738 0.93726 0.95421 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.11 14.13 -37.12 -0.52 -2.63 16 3 C -0.18 -1.99 13.34 -37.13 -0.50 -2.48 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -1.03 4.46 -26.73 -0.12 -1.15 16 6 C -0.14 -1.35 4.25 -27.88 -0.12 -1.47 16 7 C 0.51 7.60 7.67 -10.98 -0.08 7.51 16 8 O -0.55 -10.36 15.35 5.55 0.09 -10.27 16 9 N -0.60 -9.14 2.88 -171.84 -0.50 -9.64 16 10 C 0.07 0.86 8.87 59.85 0.53 1.39 16 11 C 0.12 2.36 3.36 -66.10 -0.22 2.13 16 12 H 0.10 2.11 6.99 -51.93 -0.36 1.75 16 13 C -0.15 -2.91 6.63 -24.58 -0.16 -3.07 16 14 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 15 N -0.60 -15.51 3.39 -170.06 -0.58 -16.09 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 20 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.13 2.76 6.79 -3.06 -0.02 2.74 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.09 0.73 7.40 -51.93 -0.38 0.34 16 33 H 0.09 0.72 8.11 -51.93 -0.42 0.29 16 34 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 36 H 0.08 1.10 6.43 -51.93 -0.33 0.77 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.18 7.10 -51.93 -0.37 0.81 16 39 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.03 0.57 6.29 -51.93 -0.33 0.24 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -33.36 349.95 -8.50 -41.86 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.03 Total: -1.70 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.30 Total: -0.19 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.51 Total: -51.95 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.36 -8.50 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318424788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.902 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds