Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17405 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 194.91391 * 3 2 1 5 5 C 1.53006 * 109.47005 * 79.78670 * 4 3 2 6 6 C 1.53005 * 109.46574 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46634 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00030 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99765 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00315 * 359.97438 * 9 7 6 11 11 C 1.46506 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.09002 * 110.64034 * 1.67775 * 11 9 7 13 13 C 1.55149 * 110.72085 * 125.01972 * 11 9 7 14 14 C 1.54913 * 101.58081 * 153.86559 * 13 11 9 15 15 N 1.47422 * 104.83234 * 322.98715 * 14 13 11 16 16 C 1.36933 * 125.64968 * 204.09452 * 15 14 13 17 17 H 1.08004 * 120.00015 * 180.02562 * 16 15 14 18 18 C 1.38819 * 119.99966 * 0.04017 * 16 15 14 19 19 N 1.31610 * 119.99844 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46722 * 120.00371 * 20 18 16 23 23 H 1.48505 * 109.46725 * 239.99788 * 20 18 16 24 24 C 1.47022 * 108.70013 * 24.13136 * 15 14 13 25 25 H 1.09002 * 109.47051 * 265.29859 * 1 2 3 26 26 H 1.08994 * 109.47322 * 25.30383 * 1 2 3 27 27 H 1.09006 * 109.47003 * 145.30390 * 1 2 3 28 28 H 1.08991 * 109.47246 * 319.78720 * 4 3 2 29 29 H 1.08998 * 109.46959 * 199.78313 * 4 3 2 30 30 H 1.08991 * 109.47078 * 59.99947 * 5 4 3 31 31 H 1.08998 * 109.46971 * 299.99636 * 5 4 3 32 32 H 1.08991 * 109.47491 * 60.00164 * 6 5 4 33 33 H 1.08998 * 109.47145 * 299.99493 * 6 5 4 34 34 H 1.08994 * 109.47275 * 270.00864 * 10 9 7 35 35 H 1.08997 * 109.46397 * 30.00416 * 10 9 7 36 36 H 1.08994 * 109.47241 * 150.00451 * 10 9 7 37 37 H 1.09005 * 111.00403 * 271.93754 * 13 11 9 38 38 H 1.08993 * 111.00882 * 35.79071 * 13 11 9 39 39 H 1.09006 * 110.36719 * 204.14961 * 14 13 11 40 40 H 1.09007 * 110.45916 * 81.87684 * 14 13 11 41 41 H 0.97006 * 119.99935 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.88380 * 239.51983 * 24 15 14 43 43 H 1.09004 * 109.88423 * 118.35890 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 6 4.6284 -0.2535 -1.4195 6 6 6.1584 -0.2528 -1.4191 7 6 6.6611 -0.5037 -2.8175 8 8 5.8732 -0.6674 -3.7249 9 7 7.9862 -0.5471 -3.0595 10 6 8.9380 -0.3498 -1.9633 11 6 8.4750 -0.7915 -4.4188 12 1 7.6419 -0.8865 -5.1154 13 6 9.4430 0.3358 -4.8651 14 6 10.3176 -0.4009 -5.9102 15 7 10.4865 -1.7617 -5.3689 16 6 11.5150 -2.6161 -5.6643 17 1 11.5485 -3.5971 -5.2138 18 6 12.5149 -2.2212 -6.5426 19 7 12.4746 -1.0255 -7.0910 20 14 13.9176 -3.3871 -6.9460 21 1 13.7314 -4.6605 -6.2052 22 1 13.9292 -3.6611 -8.4055 23 1 15.2069 -2.7665 -6.5486 24 6 9.3673 -2.0499 -4.4601 25 1 -0.3633 -0.0842 1.0242 26 1 -0.3634 0.9290 -0.4392 27 1 -0.3633 -0.8450 -0.5850 28 1 4.4819 -0.7826 0.6636 29 1 4.4804 0.9691 0.3480 30 1 4.2644 0.5309 -2.0830 31 1 4.2659 -1.2208 -1.7673 32 1 6.5220 -1.0374 -0.7557 33 1 6.5212 0.7143 -1.0710 34 1 9.1738 0.7105 -1.8733 35 1 8.4974 -0.7045 -1.0316 36 1 9.8506 -0.9088 -2.1696 37 1 8.8974 1.1604 -5.3239 38 1 10.0467 0.6865 -4.0281 39 1 11.2854 0.0908 -6.0093 40 1 9.8103 -0.4364 -6.8744 41 1 13.1735 -0.7494 -7.7044 42 1 9.7470 -2.2680 -3.4619 43 1 8.7946 -2.8984 -4.8347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318424788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = 8.393054 kcal Electronic energy + Delta-G solvation = -21113.965814 eV Core-core repulsion = 17967.118606 eV Total energy + Delta-G solvation = -3146.847208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18057 -39.05885 -36.62813 -36.21890 -34.34261 -33.89589 -31.30270 -30.48425 -29.13664 -27.79135 -27.35920 -26.21927 -23.41972 -22.14065 -21.53596 -19.91272 -18.97845 -18.39232 -17.59538 -17.03851 -16.89459 -16.56980 -15.98847 -15.66168 -15.34152 -14.69783 -14.62418 -14.48714 -14.34365 -14.13048 -13.95157 -13.72446 -13.40979 -13.28778 -13.21234 -13.06865 -12.96574 -12.73777 -12.42866 -12.33285 -12.16802 -11.98737 -11.83691 -11.82265 -11.39639 -10.84250 -10.78059 -10.61214 -10.55378 -9.61085 -8.93632 -7.79459 -5.25443 1.46751 1.48188 1.58484 1.65637 1.71993 1.79917 2.03254 2.49381 3.30774 3.38713 3.56912 3.72068 3.88999 3.96249 4.09111 4.12212 4.22500 4.30875 4.51447 4.58151 4.63222 4.65479 4.70850 4.75949 4.77361 4.82193 4.84805 4.86669 4.89238 4.97526 5.05801 5.09297 5.16543 5.22904 5.35287 5.43979 5.55858 5.60077 5.75575 6.26740 6.49049 6.75023 7.07327 7.20868 7.73228 8.37195 9.22509 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.002652 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.475952 B =10553.930960 C =10573.697827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.221 4.221 3 C -0.214 4.214 4 C -0.001 4.001 5 C -0.094 4.094 6 C -0.125 4.125 7 C 0.503 3.497 8 O -0.596 6.596 9 N -0.603 5.603 10 C 0.068 3.932 11 C 0.139 3.861 12 H 0.078 0.922 13 C -0.130 4.130 14 C 0.155 3.845 15 N -0.622 5.622 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.287 1.287 24 C 0.130 3.870 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.082 0.918 40 H -0.017 1.017 41 H 0.248 0.752 42 H 0.046 0.954 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 4.682 18.996 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.221 4.221 3 C -0.214 4.214 4 C -0.037 4.037 5 C -0.132 4.132 6 C -0.164 4.164 7 C 0.294 3.706 8 O -0.477 6.477 9 N -0.334 5.334 10 C -0.073 4.073 11 C 0.034 3.966 12 H 0.097 0.903 13 C -0.169 4.169 14 C 0.030 3.970 15 N -0.349 5.349 16 C -0.368 4.368 17 H 0.099 0.901 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.812 3.188 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.003 3.997 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.001 0.999 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -15.346 4.569 18.440 24.421 hybrid contribution 0.749 -0.677 -1.137 1.521 sum -14.597 3.892 17.303 22.970 Atomic orbital electron populations 1.19046 0.82795 1.03905 1.04176 1.23421 0.95495 1.02025 1.01193 1.23148 0.95005 1.01473 1.01809 1.18791 0.83054 1.04974 0.96894 1.21181 0.93888 1.01916 0.96218 1.21750 0.96056 1.06981 0.91610 1.21633 0.81214 0.75118 0.92677 1.90675 1.56105 1.52188 1.48777 1.47949 1.06571 1.70236 1.08638 1.22089 0.93213 1.02875 0.89148 1.21735 0.95618 0.94887 0.84369 0.90342 1.23132 0.97156 0.96841 0.99809 1.21730 0.98768 0.84945 0.91596 1.44720 1.24179 1.14451 1.51517 1.19478 0.99385 0.96197 1.21718 0.90058 1.25672 1.01736 0.98944 0.99580 1.70034 1.35284 1.19826 1.34679 0.84935 0.78621 0.78171 0.77113 1.19087 1.22189 1.21384 1.21623 0.88668 0.95189 0.94179 0.88672 0.89231 0.89484 0.87443 0.87352 0.93082 0.93232 0.85455 0.85361 0.90679 0.87172 0.91764 0.90728 0.89967 0.89983 0.99921 0.94180 0.93622 0.97216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.52 10.32 70.18 0.72 0.20 16 2 C -0.22 -4.47 14.13 31.12 0.44 -4.03 16 3 C -0.21 -4.42 13.34 31.12 0.42 -4.00 16 4 C 0.00 -0.01 5.70 28.79 0.16 0.15 16 5 C -0.09 -1.79 4.46 30.60 0.14 -1.65 16 6 C -0.12 -1.95 4.25 29.85 0.13 -1.82 16 7 C 0.50 14.06 7.67 87.66 0.67 14.73 16 8 O -0.60 -22.78 15.35 -3.04 -0.05 -22.83 16 9 N -0.60 -16.98 2.88 -815.97 -2.35 -19.33 16 10 C 0.07 1.31 8.87 127.77 1.13 2.44 16 11 C 0.14 5.21 3.36 46.18 0.16 5.37 16 12 H 0.08 3.33 6.99 -2.39 -0.02 3.32 16 13 C -0.13 -4.96 6.63 31.98 0.21 -4.75 16 14 C 0.15 7.82 5.89 86.86 0.51 8.33 16 15 N -0.62 -32.64 3.39 -691.95 -2.35 -34.99 16 16 C -0.24 -13.49 10.27 84.04 0.86 -12.62 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -3.79 5.49 84.87 0.47 -3.33 16 19 N -0.95 -56.56 10.09 21.65 0.22 -56.35 16 20 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 24 C 0.13 5.58 6.79 86.73 0.59 6.17 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.13 1.24 7.40 -2.39 -0.02 1.23 16 33 H 0.13 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 35 H 0.11 1.21 6.44 -2.39 -0.02 1.19 16 36 H 0.06 1.52 6.43 -2.39 -0.02 1.50 16 37 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.08 2.85 7.10 -2.39 -0.02 2.83 16 39 H 0.08 4.61 5.87 -2.38 -0.01 4.59 16 40 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 41 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 42 H 0.05 1.82 6.29 -2.38 -0.01 1.80 16 43 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -76.48 349.95 5.09 -71.39 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.98 Total: 9.32 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.61 Total: 5.18 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.48 Total: -110.67 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -76.48 5.09 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318424788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.780 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds