Wall clock time and date at job start Tue Mar 31 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46590 * 119.68285 * 0.02562 * 7 5 4 9 9 C 1.53953 * 110.57566 * 132.15022 * 8 7 5 10 10 C 1.51518 * 107.34640 * 51.04928 * 9 8 7 11 11 H 1.08996 * 109.28085 * 53.70575 * 10 9 8 12 12 C 1.55360 * 107.79769 * 295.14479 * 10 9 8 13 13 H 1.09007 * 111.51113 * 308.81229 * 12 10 9 14 14 C 1.53424 * 100.36372 * 190.35316 * 12 10 9 15 15 C 1.55292 * 101.41546 * 39.95101 * 14 12 10 16 16 N 1.45470 * 117.35211 * 178.76669 * 10 9 8 17 17 C 1.36939 * 126.40513 * 329.34728 * 16 10 9 18 18 H 1.07994 * 120.00028 * 0.02562 * 17 16 10 19 19 C 1.38811 * 119.99705 * 180.02562 * 17 16 10 20 20 N 1.31620 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47391 * 59.99977 * 21 19 17 23 23 H 1.48501 * 109.47365 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47103 * 299.99800 * 21 19 17 25 25 C 1.47719 * 119.68011 * 179.72560 * 7 5 4 26 26 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 30 30 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 33 33 H 1.09002 * 109.25288 * 252.42847 * 8 7 5 34 34 H 1.08998 * 109.26061 * 11.89914 * 8 7 5 35 35 H 1.09002 * 109.88678 * 170.51610 * 9 8 7 36 36 H 1.09003 * 109.88071 * 291.59639 * 9 8 7 37 37 H 1.08998 * 111.57724 * 281.77011 * 14 12 10 38 38 H 1.09003 * 110.76345 * 157.77234 * 14 12 10 39 39 H 1.09004 * 109.91718 * 217.67992 * 15 14 12 40 40 H 1.09001 * 109.91583 * 96.38352 * 15 14 12 41 41 H 0.97001 * 119.99750 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.06840 * 351.29680 * 25 7 5 43 43 H 1.09003 * 110.06682 * 112.87185 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5704 3.4643 0.3208 7 7 4.7054 2.8870 2.1376 8 6 4.9636 1.8835 3.1745 9 6 6.4770 1.6584 3.3447 10 6 7.1189 3.0192 3.5230 11 1 6.6236 3.5468 4.3381 12 6 6.9194 3.8149 2.2037 13 1 7.2421 3.2385 1.3366 14 6 7.8402 5.0144 2.4628 15 6 9.0508 4.3291 3.1530 16 7 8.5581 3.0572 3.7314 17 6 9.3158 2.0972 4.3475 18 1 8.8465 1.2047 4.7340 19 6 10.6870 2.2715 4.4753 20 7 11.2590 3.3591 4.0038 21 14 11.7206 0.9616 5.3152 22 1 11.5891 -0.3208 4.5781 23 1 13.1443 1.3839 5.3226 24 1 11.2503 0.7803 6.7120 25 6 5.4448 4.1658 2.1270 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5065 1.0922 32 1 2.4772 1.2357 2.1130 33 1 4.5427 2.2267 4.1196 34 1 4.4905 0.9434 2.8908 35 1 6.6636 1.0423 4.2244 36 1 6.8814 1.1712 2.4574 37 1 7.3734 5.7420 3.1268 38 1 8.1395 5.4816 1.5246 39 1 9.4395 4.9708 3.9438 40 1 9.8306 4.1260 2.4190 41 1 12.2172 3.4806 4.0928 42 1 5.2384 4.7095 1.2050 43 1 5.1614 4.7688 2.9897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320098510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:16 Heat of formation + Delta-G solvation = 5.644695 kcal Electronic energy + Delta-G solvation = -22210.859430 eV Core-core repulsion = 19063.893044 eV Total energy + Delta-G solvation = -3146.966386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28027 -38.38663 -35.62426 -35.30543 -32.78256 -31.57570 -31.05014 -29.44617 -28.09505 -25.20176 -24.51858 -22.88906 -22.33597 -20.14445 -19.98196 -19.72948 -18.72237 -17.11253 -16.29820 -15.92534 -15.73087 -15.12393 -14.92942 -14.38920 -14.04887 -13.83051 -13.79998 -13.16267 -13.08999 -12.68862 -12.46834 -12.44828 -12.14139 -11.63146 -11.49445 -11.42611 -11.21648 -11.19996 -10.83896 -10.80306 -10.71899 -10.19333 -10.09065 -9.92316 -9.71331 -9.63600 -9.48677 -9.43857 -8.63722 -8.48620 -6.85312 -5.72866 -3.06272 2.04004 2.71749 3.11705 3.38492 3.42794 3.44380 4.44102 4.48149 4.74088 4.90547 4.96338 5.03754 5.11156 5.14261 5.26064 5.34919 5.42327 5.54546 5.58808 5.61632 5.63542 5.78425 5.81051 5.89478 5.98760 6.03757 6.15338 6.17780 6.22608 6.35657 6.40454 6.49707 6.55316 6.61206 6.63336 6.84119 7.05910 7.51679 7.53837 7.60630 7.79498 8.23068 8.26800 9.17809 9.81512 10.49773 11.39584 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003945 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.407861 B = 7096.018897 C = 7880.155754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.080 4.080 4 C -0.136 4.136 5 C 0.510 3.490 6 O -0.551 6.551 7 N -0.608 5.608 8 C 0.110 3.890 9 C -0.130 4.130 10 C 0.167 3.833 11 H 0.020 0.980 12 C -0.124 4.124 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.177 3.823 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.125 3.875 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 -3.915 -4.225 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.299 3.701 6 O -0.429 6.429 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.169 4.169 10 C 0.059 3.941 11 H 0.037 0.963 12 C -0.144 4.144 13 H 0.098 0.902 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.320 5.320 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.003 3.997 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.678 -3.504 -4.584 17.648 hybrid contribution 0.758 -0.809 0.601 1.261 sum -15.920 -4.313 -3.983 16.968 Atomic orbital electron populations 1.23863 0.95980 1.01794 1.01669 1.23010 0.96091 0.98483 0.99441 1.20514 0.97796 0.95219 0.98193 1.21664 0.98911 0.96118 1.00897 1.20704 0.79784 0.88866 0.80783 1.90665 1.66353 1.48544 1.37353 1.48355 1.39000 1.18570 1.28147 1.21809 0.97638 0.91141 0.90721 1.21887 0.92655 0.99669 1.02682 1.20646 0.87151 0.93076 0.93269 0.96260 1.22511 0.92887 0.98920 1.00103 0.90208 1.22661 0.98371 0.96330 1.00213 1.21530 0.91473 0.85745 0.95961 1.44215 1.00536 1.19822 1.67408 1.18946 0.88977 0.97860 1.29752 0.90442 1.24796 0.96642 0.97764 1.01221 1.69931 1.09951 1.26398 1.50610 0.86231 0.79583 0.80869 0.79256 1.21208 1.21632 1.21195 1.21528 0.90924 0.84516 1.02682 0.88586 0.88579 0.87300 0.90816 0.90205 0.88706 0.88929 0.91657 0.90157 0.90524 0.91376 0.92242 0.92092 0.94410 0.92737 0.93692 0.89332 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.28 9.52 -36.03 -0.34 -1.62 16 3 C -0.08 -0.80 4.95 -27.89 -0.14 -0.94 16 4 C -0.14 -1.37 4.01 -27.88 -0.11 -1.49 16 5 C 0.51 7.19 7.67 -10.98 -0.08 7.11 16 6 O -0.55 -9.58 15.34 5.56 0.09 -9.49 16 7 N -0.61 -8.61 3.01 -172.77 -0.52 -9.13 16 8 C 0.11 1.38 6.22 -3.50 -0.02 1.36 16 9 C -0.13 -2.11 5.47 -26.98 -0.15 -2.26 16 10 C 0.17 3.27 2.58 -67.98 -0.18 3.09 16 11 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 12 C -0.12 -2.20 2.83 -89.77 -0.25 -2.46 16 13 H 0.08 1.55 8.13 -51.92 -0.42 1.12 16 14 C -0.14 -2.54 6.51 -25.30 -0.16 -2.71 16 15 C 0.18 4.25 5.43 -1.92 -0.01 4.24 16 16 N -0.60 -14.69 3.34 -163.10 -0.55 -15.24 16 17 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 18 H 0.08 1.98 7.23 -52.49 -0.38 1.60 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.83 10.44 55.49 0.58 -26.25 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.13 1.93 5.90 -3.99 -0.02 1.91 16 26 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 28 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.09 0.84 7.55 -51.93 -0.39 0.45 16 32 H 0.09 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.78 5.84 -51.93 -0.30 0.48 16 35 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 36 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 37 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 40 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.09 1.42 7.00 -51.93 -0.36 1.05 16 43 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -31.12 336.81 -8.84 -39.95 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.19 Total: -0.19 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.30 Total: -1.45 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.49 Total: -50.62 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.12 -8.84 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320098510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.599 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds