Wall clock time and date at job start Tue Mar 31 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46590 * 119.68285 * 0.02562 * 7 5 4 9 9 C 1.53953 * 110.57566 * 132.15022 * 8 7 5 10 10 C 1.51518 * 107.34640 * 51.04928 * 9 8 7 11 11 H 1.08996 * 109.28085 * 53.70575 * 10 9 8 12 12 C 1.55360 * 107.79769 * 295.14479 * 10 9 8 13 13 H 1.09007 * 111.51113 * 308.81229 * 12 10 9 14 14 C 1.53424 * 100.36372 * 190.35316 * 12 10 9 15 15 C 1.55292 * 101.41546 * 39.95101 * 14 12 10 16 16 N 1.45470 * 117.35211 * 178.76669 * 10 9 8 17 17 C 1.36939 * 126.40513 * 329.34728 * 16 10 9 18 18 H 1.07994 * 120.00028 * 0.02562 * 17 16 10 19 19 C 1.38811 * 119.99705 * 180.02562 * 17 16 10 20 20 N 1.31620 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47391 * 59.99977 * 21 19 17 23 23 H 1.48501 * 109.47365 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47103 * 299.99800 * 21 19 17 25 25 C 1.47719 * 119.68011 * 179.72560 * 7 5 4 26 26 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 30 30 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 33 33 H 1.09002 * 109.25288 * 252.42847 * 8 7 5 34 34 H 1.08998 * 109.26061 * 11.89914 * 8 7 5 35 35 H 1.09002 * 109.88678 * 170.51610 * 9 8 7 36 36 H 1.09003 * 109.88071 * 291.59639 * 9 8 7 37 37 H 1.08998 * 111.57724 * 281.77011 * 14 12 10 38 38 H 1.09003 * 110.76345 * 157.77234 * 14 12 10 39 39 H 1.09004 * 109.91718 * 217.67992 * 15 14 12 40 40 H 1.09001 * 109.91583 * 96.38352 * 15 14 12 41 41 H 0.97001 * 119.99750 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.06840 * 351.29680 * 25 7 5 43 43 H 1.09003 * 110.06682 * 112.87185 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6379 1.1812 6 8 3.5704 3.4643 0.3208 7 7 4.7054 2.8870 2.1376 8 6 4.9636 1.8835 3.1745 9 6 6.4770 1.6584 3.3447 10 6 7.1189 3.0192 3.5230 11 1 6.6236 3.5468 4.3381 12 6 6.9194 3.8149 2.2037 13 1 7.2421 3.2385 1.3366 14 6 7.8402 5.0144 2.4628 15 6 9.0508 4.3291 3.1530 16 7 8.5581 3.0572 3.7314 17 6 9.3158 2.0972 4.3475 18 1 8.8465 1.2047 4.7340 19 6 10.6870 2.2715 4.4753 20 7 11.2590 3.3591 4.0038 21 14 11.7206 0.9616 5.3152 22 1 11.5891 -0.3208 4.5781 23 1 13.1443 1.3839 5.3226 24 1 11.2503 0.7803 6.7120 25 6 5.4448 4.1658 2.1270 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5065 1.0922 32 1 2.4772 1.2357 2.1130 33 1 4.5427 2.2267 4.1196 34 1 4.4905 0.9434 2.8908 35 1 6.6636 1.0423 4.2244 36 1 6.8814 1.1712 2.4574 37 1 7.3734 5.7420 3.1268 38 1 8.1395 5.4816 1.5246 39 1 9.4395 4.9708 3.9438 40 1 9.8306 4.1260 2.4190 41 1 12.2172 3.4806 4.0928 42 1 5.2384 4.7095 1.2050 43 1 5.1614 4.7688 2.9897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320098510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:16 Heat of formation + Delta-G solvation = -12.461819 kcal Electronic energy + Delta-G solvation = -22211.644587 eV Core-core repulsion = 19063.893044 eV Total energy + Delta-G solvation = -3147.751543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50517 -39.79741 -36.83848 -36.25116 -34.56357 -33.03181 -32.07091 -30.97223 -29.57921 -26.73986 -25.88244 -24.09696 -23.69653 -21.87590 -21.20697 -20.63062 -19.90096 -18.61350 -17.76346 -16.99695 -16.86325 -16.74429 -16.02630 -15.86937 -15.62078 -15.10346 -14.92355 -14.49527 -14.33997 -14.00566 -13.81247 -13.45520 -13.35030 -13.13358 -13.04926 -12.88962 -12.63907 -12.47468 -12.14278 -12.04973 -11.91249 -11.85709 -11.74260 -11.60468 -11.52182 -10.99601 -10.75360 -10.69021 -10.17659 -9.66216 -8.86880 -7.82279 -5.16967 1.43086 1.46828 1.49879 1.55809 1.65023 2.04685 2.51795 3.36550 3.42571 3.60372 3.86667 3.88943 3.99871 4.03677 4.17732 4.23476 4.25888 4.33859 4.45241 4.49652 4.52749 4.64918 4.69070 4.74099 4.83105 4.88854 4.92666 4.97270 5.06124 5.08998 5.12228 5.23226 5.26224 5.47690 5.55152 5.57828 5.66649 5.76483 5.80198 5.94928 6.21475 6.44282 7.09939 7.18667 7.80668 8.49728 9.29636 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003945 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.407861 B = 7096.018897 C = 7880.155754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C -0.077 4.077 4 C -0.129 4.129 5 C 0.506 3.494 6 O -0.589 6.589 7 N -0.611 5.611 8 C 0.117 3.883 9 C -0.124 4.124 10 C 0.156 3.844 11 H 0.023 0.977 12 C -0.109 4.109 13 H 0.060 0.940 14 C -0.123 4.123 15 C 0.182 3.818 16 N -0.617 5.617 17 C -0.230 4.230 18 H 0.090 0.910 19 C -0.072 4.072 20 N -0.956 5.956 21 Si 0.976 3.024 22 H -0.276 1.276 23 H -0.300 1.300 24 H -0.275 1.275 25 C 0.133 3.867 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.003 0.997 40 H 0.015 0.985 41 H 0.244 0.756 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.390 -5.796 -3.630 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.177 4.177 3 C -0.115 4.115 4 C -0.168 4.168 5 C 0.297 3.703 6 O -0.470 6.470 7 N -0.343 5.343 8 C -0.005 4.005 9 C -0.163 4.163 10 C 0.050 3.950 11 H 0.040 0.960 12 C -0.129 4.129 13 H 0.079 0.921 14 C -0.162 4.162 15 C 0.057 3.943 16 N -0.341 5.341 17 C -0.359 4.359 18 H 0.108 0.892 19 C -0.265 4.265 20 N -0.606 5.606 21 Si 0.804 3.196 22 H -0.202 1.202 23 H -0.227 1.227 24 H -0.201 1.201 25 C 0.011 3.989 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.021 0.979 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.287 -5.414 -3.978 20.424 hybrid contribution 1.510 -0.193 0.398 1.574 sum -17.777 -5.607 -3.581 18.981 Atomic orbital electron populations 1.24037 0.95963 1.02490 1.00528 1.22988 0.96242 0.98032 1.00410 1.20445 0.97563 0.95907 0.97574 1.21719 0.98990 0.94048 1.02046 1.21433 0.79451 0.89760 0.79697 1.90653 1.67518 1.50122 1.38721 1.48440 1.38849 1.18320 1.28694 1.21904 0.94813 0.92520 0.91269 1.21825 0.95161 0.97273 1.02074 1.20904 0.84498 0.95725 0.93910 0.95964 1.22330 0.94544 0.97713 0.98356 0.92102 1.22541 0.96268 0.96734 1.00636 1.21288 0.92922 0.85841 0.94208 1.44516 1.02844 1.19530 1.67213 1.19405 0.89432 0.98418 1.28649 0.89247 1.25654 0.98098 0.99926 1.02785 1.70170 1.09450 1.28426 1.52531 0.85184 0.77212 0.78543 0.78620 1.20200 1.22661 1.20138 1.21346 0.88988 0.85590 1.03024 0.87065 0.88800 0.85871 0.92083 0.91889 0.86743 0.86339 0.89773 0.86431 0.90392 0.92757 0.90260 0.90676 0.97862 0.96629 0.94655 0.89924 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.32 67.78 0.97 -1.52 16 2 C -0.16 -2.22 9.52 25.65 0.24 -1.97 16 3 C -0.08 -1.40 4.95 29.85 0.15 -1.25 16 4 C -0.13 -2.14 4.01 29.85 0.12 -2.02 16 5 C 0.51 13.03 7.67 87.66 0.67 13.70 16 6 O -0.59 -19.85 15.34 -3.03 -0.05 -19.89 16 7 N -0.61 -15.57 3.01 -818.90 -2.46 -18.04 16 8 C 0.12 2.47 6.22 86.68 0.54 3.01 16 9 C -0.12 -3.76 5.47 30.43 0.17 -3.60 16 10 C 0.16 5.97 2.58 45.51 0.12 6.09 16 11 H 0.02 0.87 7.95 -2.39 -0.02 0.85 16 12 C -0.11 -3.80 2.83 -10.24 -0.03 -3.83 16 13 H 0.06 2.35 8.13 -2.38 -0.02 2.34 16 14 C -0.12 -4.56 6.51 31.52 0.21 -4.35 16 15 C 0.18 9.10 5.43 86.85 0.47 9.57 16 16 N -0.62 -30.87 3.34 -669.92 -2.24 -33.11 16 17 C -0.23 -12.47 9.88 84.03 0.83 -11.64 16 18 H 0.09 4.50 7.23 -2.91 -0.02 4.48 16 19 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 20 N -0.96 -58.04 10.44 21.65 0.23 -57.82 16 21 Si 0.98 45.29 29.55 68.60 2.03 47.31 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 C 0.13 3.84 5.90 85.74 0.51 4.35 16 26 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 27 H 0.09 1.23 7.84 -2.91 -0.02 1.21 16 28 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 30 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.11 1.52 7.55 -2.39 -0.02 1.50 16 32 H 0.12 1.42 7.99 -2.39 -0.02 1.40 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.12 1.66 5.84 -2.39 -0.01 1.64 16 35 H 0.08 2.35 7.65 -2.39 -0.02 2.33 16 36 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 37 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.00 0.17 7.77 -2.39 -0.02 0.16 16 40 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 41 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.08 2.53 7.00 -2.38 -0.02 2.52 16 43 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -70.52 336.81 3.90 -66.62 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.96 Total: 12.01 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.43 Total: 2.91 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.48 Total: -108.96 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.52 3.90 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320098510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.163 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds