Wall clock time and date at job start Tue Mar 31 2020 00:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99696 * 2 1 4 4 H 1.08991 * 109.47052 * 4.84282 * 3 2 1 5 5 C 1.53001 * 109.46824 * 244.83702 * 3 2 1 6 6 N 1.46501 * 109.46905 * 64.24363 * 5 3 2 7 7 C 1.38823 * 120.00192 * 185.04754 * 6 5 3 8 8 C 1.39797 * 119.57945 * 359.73245 * 7 6 5 9 9 C 1.38603 * 119.48284 * 179.78622 * 8 7 6 10 10 C 1.38386 * 118.68419 * 0.47851 * 9 8 7 11 11 C 1.40545 * 119.14754 * 359.74457 * 10 9 8 12 12 C 1.41320 * 119.78453 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00046 * 6.97605 * 12 11 10 14 14 C 1.40028 * 120.00478 * 186.96769 * 12 11 10 15 15 N 1.30750 * 119.99550 * 6.93908 * 14 12 11 16 16 Si 1.86791 * 120.00372 * 186.93359 * 14 12 11 17 17 H 1.48500 * 109.46859 * 94.97177 * 16 14 12 18 18 H 1.48498 * 109.47622 * 214.97137 * 16 14 12 19 19 H 1.48498 * 109.47103 * 334.97653 * 16 14 12 20 20 N 1.31951 * 119.58712 * 180.02562 * 7 6 5 21 21 C 1.53005 * 109.46837 * 124.84261 * 3 2 1 22 22 C 1.52999 * 109.47419 * 60.00089 * 21 3 2 23 23 C 1.52992 * 109.46978 * 299.99520 * 21 3 2 24 24 C 1.53004 * 109.46652 * 179.97438 * 21 3 2 25 25 H 1.09004 * 109.47391 * 177.22657 * 1 2 3 26 26 H 1.08991 * 109.47512 * 297.22750 * 1 2 3 27 27 H 1.09004 * 109.47268 * 57.23064 * 1 2 3 28 28 H 1.08999 * 109.47070 * 184.24181 * 5 3 2 29 29 H 1.08997 * 109.47730 * 304.24869 * 5 3 2 30 30 H 0.97003 * 120.00151 * 5.05581 * 6 5 3 31 31 H 1.07994 * 120.26208 * 359.97438 * 8 7 6 32 32 H 1.08010 * 120.65474 * 180.22249 * 9 8 7 33 33 H 1.08001 * 120.42457 * 179.76854 * 10 9 8 34 34 H 0.96999 * 120.00062 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47164 * 299.99977 * 22 21 3 36 36 H 1.08999 * 109.47209 * 179.97438 * 22 21 3 37 37 H 1.09001 * 109.47076 * 59.99331 * 22 21 3 38 38 H 1.08999 * 109.46906 * 180.02562 * 23 21 3 39 39 H 1.08995 * 109.47380 * 299.99983 * 23 21 3 40 40 H 1.09000 * 109.47236 * 60.00423 * 23 21 3 41 41 H 1.08998 * 109.47176 * 299.99680 * 24 21 3 42 42 H 1.09001 * 109.47282 * 59.99797 * 24 21 3 43 43 H 1.08999 * 109.46934 * 179.97438 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2224 2.0538 0.0868 5 6 2.7778 1.5219 -1.3056 6 7 1.8418 1.4973 -2.4323 7 6 2.3199 1.5680 -3.7337 8 6 3.6960 1.6681 -3.9588 9 6 4.1715 1.7340 -5.2591 10 6 3.2613 1.7085 -6.3012 11 6 1.8898 1.6115 -6.0101 12 6 0.9487 1.5839 -7.0640 13 1 1.2864 1.5234 -8.0880 14 6 -0.4217 1.6347 -6.7806 15 7 -0.8285 1.8439 -5.5557 16 14 -1.6684 1.4037 -8.1522 17 1 -2.0917 -0.0188 -8.2019 18 1 -2.8516 2.2635 -7.8958 19 1 -1.0529 1.7825 -9.4495 20 7 1.4695 1.5457 -4.7424 21 6 2.9704 1.4362 1.1840 22 6 4.0762 0.3858 1.0622 23 6 2.2028 1.2198 2.4895 24 6 3.5932 2.8338 1.1835 25 1 -0.3634 -1.0265 -0.0497 26 1 -0.3634 0.4701 0.9137 27 1 -0.3634 0.5562 -0.8641 28 1 3.2833 2.4871 -1.2742 29 1 3.5157 0.7292 -1.4291 30 1 0.8878 1.4318 -2.2690 31 1 4.3834 1.6908 -3.1263 32 1 5.2311 1.8080 -5.4549 33 1 3.6007 1.7620 -7.3252 34 1 -1.7778 1.8795 -5.3594 35 1 3.6329 -0.6100 1.0622 36 1 4.7605 0.4792 1.9054 37 1 4.6230 0.5400 0.1320 38 1 2.8868 1.3133 3.3330 39 1 1.4151 1.9682 2.5763 40 1 1.7594 0.2240 2.4896 41 1 4.1401 2.9876 0.2534 42 1 2.8057 3.5825 1.2700 43 1 4.2769 2.9271 2.0272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320359809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:21 Heat of formation + Delta-G solvation = -21.487851 kcal Electronic energy + Delta-G solvation = -22186.490325 eV Core-core repulsion = 19038.347384 eV Total energy + Delta-G solvation = -3148.142941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.43564 -38.02424 -35.76937 -34.68704 -33.14782 -30.46519 -29.62422 -27.79823 -27.40273 -27.15208 -25.79537 -25.25197 -22.87531 -21.38629 -20.28337 -18.91004 -17.34580 -16.58437 -16.35369 -15.67630 -15.17088 -14.63811 -14.45466 -14.16993 -13.91357 -13.69762 -13.61387 -13.39214 -12.88765 -12.77468 -12.33963 -12.28649 -11.94387 -11.88261 -11.65354 -11.54525 -11.29910 -11.11130 -11.00855 -10.96463 -10.66473 -10.60039 -10.51686 -10.33167 -9.89294 -9.43477 -9.31303 -8.81263 -7.87679 -7.45130 -6.47403 -6.31968 -4.42264 2.90522 3.12934 3.16577 3.28285 3.33929 3.82483 4.00986 4.15171 4.69260 4.83242 4.87505 4.90343 5.20583 5.29017 5.42720 5.47334 5.55635 5.60471 5.64468 5.72341 5.79779 5.84607 5.88767 5.95982 6.03090 6.09460 6.12208 6.16094 6.20967 6.35800 6.39985 6.62666 6.90515 6.94151 6.99502 7.28225 7.31557 7.64685 7.86189 7.96624 8.21257 8.41340 8.72645 8.84769 9.16358 10.27905 10.44011 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.004480 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.928459 B = 6247.874931 C = 7164.190243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.090 3.910 4 H 0.065 0.935 5 C 0.128 3.872 6 N -0.735 5.735 7 C 0.413 3.587 8 C -0.365 4.365 9 C -0.032 4.032 10 C -0.318 4.318 11 C 0.296 3.704 12 C -0.438 4.438 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.721 5.721 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.535 5.535 21 C -0.071 4.071 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.147 4.147 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.269 0.731 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -0.303 13.870 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C 0.031 3.969 4 H 0.083 0.917 5 C 0.002 3.998 6 N -0.372 5.372 7 C 0.173 3.827 8 C -0.391 4.391 9 C -0.056 4.056 10 C -0.341 4.341 11 C 0.169 3.831 12 C -0.471 4.471 13 H 0.101 0.899 14 C -0.150 4.150 15 N -0.343 5.343 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.257 5.257 21 C -0.072 4.072 22 C -0.197 4.197 23 C -0.196 4.196 24 C -0.204 4.204 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.830 -0.482 14.235 14.360 hybrid contribution -0.215 0.178 -0.672 0.728 sum 1.615 -0.304 13.563 13.662 Atomic orbital electron populations 1.22841 0.81290 1.02725 0.99711 1.87916 1.19293 1.27081 1.94879 1.22387 0.95301 0.85304 0.93894 0.91678 1.21594 0.92854 1.00773 0.84584 1.44056 1.07840 1.83512 1.01814 1.18484 0.88708 0.89707 0.85768 1.20595 0.93984 1.28329 0.96234 1.20597 0.97005 0.95218 0.92774 1.21527 0.94776 1.20493 0.97266 1.18175 0.89618 0.86236 0.89096 1.19565 0.90200 1.43806 0.93487 0.89904 1.26014 0.99618 0.93347 0.95999 1.70105 1.15646 1.29134 1.19390 0.86379 0.79865 0.78953 0.81947 1.19558 1.20307 1.18570 1.68128 1.34290 1.25263 0.97997 1.20732 0.95692 0.96224 0.94516 1.21845 0.97290 0.99006 1.01511 1.21815 0.99718 1.01998 0.96038 1.21980 1.00777 0.95200 1.02443 0.89860 0.94529 0.93578 0.92210 0.91799 0.77449 0.89256 0.88975 0.88741 0.91968 0.91776 0.93094 0.92210 0.92667 0.93132 0.92004 0.91707 0.92588 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.66 101.05 1.08 1.47 16 2 O -0.37 -5.43 8.93 -35.23 -0.31 -5.75 16 3 C 0.09 1.21 1.54 -26.73 -0.04 1.17 16 4 H 0.07 0.86 7.61 -51.93 -0.40 0.46 16 5 C 0.13 2.10 3.88 -4.04 -0.02 2.08 16 6 N -0.74 -15.34 5.65 -60.39 -0.34 -15.68 16 7 C 0.41 10.42 7.65 -155.33 -1.19 9.23 16 8 C -0.37 -8.70 9.32 -38.86 -0.36 -9.06 16 9 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 10 C -0.32 -8.24 9.83 -38.66 -0.38 -8.62 16 11 C 0.30 8.43 6.52 -85.00 -0.55 7.88 16 12 C -0.44 -12.12 9.13 -37.74 -0.34 -12.46 16 13 H 0.08 2.15 7.86 -52.49 -0.41 1.74 16 14 C 0.07 1.95 5.47 -17.34 -0.09 1.86 16 15 N -0.72 -19.44 11.56 55.55 0.64 -18.80 16 16 Si 0.90 19.00 29.57 -169.99 -5.03 13.98 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 20 N -0.54 -15.14 7.99 -10.33 -0.08 -15.22 16 21 C -0.07 -0.78 0.63 -154.51 -0.10 -0.88 16 22 C -0.14 -1.56 7.97 37.16 0.30 -1.26 16 23 C -0.14 -1.35 8.33 37.15 0.31 -1.04 16 24 C -0.15 -1.47 8.13 37.16 0.30 -1.17 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.63 6.94 -51.93 -0.36 0.27 16 28 H 0.06 0.95 6.18 -51.93 -0.32 0.63 16 29 H 0.06 1.10 6.18 -51.93 -0.32 0.78 16 30 H 0.39 8.16 7.34 -40.82 -0.30 7.86 16 31 H 0.09 1.90 6.67 -52.49 -0.35 1.54 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 35 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 41 H 0.06 0.69 6.34 -51.93 -0.33 0.36 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -30.43 342.62 -8.32 -38.75 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.86 Total: 9.52 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.49 Total: -11.97 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.22 Total: -49.70 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.31 Total: -5.75 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.43 -8.32 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320359809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.263 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds