Wall clock time and date at job start Tue Mar 31 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99696 * 2 1 4 4 H 1.08991 * 109.47052 * 4.84282 * 3 2 1 5 5 C 1.53001 * 109.46824 * 244.83702 * 3 2 1 6 6 N 1.46501 * 109.46905 * 64.24363 * 5 3 2 7 7 C 1.38823 * 120.00192 * 185.04754 * 6 5 3 8 8 C 1.39797 * 119.57945 * 359.73245 * 7 6 5 9 9 C 1.38603 * 119.48284 * 179.78622 * 8 7 6 10 10 C 1.38386 * 118.68419 * 0.47851 * 9 8 7 11 11 C 1.40545 * 119.14754 * 359.74457 * 10 9 8 12 12 C 1.41320 * 119.78453 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00046 * 6.97605 * 12 11 10 14 14 C 1.40028 * 120.00478 * 186.96769 * 12 11 10 15 15 N 1.30750 * 119.99550 * 6.93908 * 14 12 11 16 16 Si 1.86791 * 120.00372 * 186.93359 * 14 12 11 17 17 H 1.48500 * 109.46859 * 94.97177 * 16 14 12 18 18 H 1.48498 * 109.47622 * 214.97137 * 16 14 12 19 19 H 1.48498 * 109.47103 * 334.97653 * 16 14 12 20 20 N 1.31951 * 119.58712 * 180.02562 * 7 6 5 21 21 C 1.53005 * 109.46837 * 124.84261 * 3 2 1 22 22 C 1.52999 * 109.47419 * 60.00089 * 21 3 2 23 23 C 1.52992 * 109.46978 * 299.99520 * 21 3 2 24 24 C 1.53004 * 109.46652 * 179.97438 * 21 3 2 25 25 H 1.09004 * 109.47391 * 177.22657 * 1 2 3 26 26 H 1.08991 * 109.47512 * 297.22750 * 1 2 3 27 27 H 1.09004 * 109.47268 * 57.23064 * 1 2 3 28 28 H 1.08999 * 109.47070 * 184.24181 * 5 3 2 29 29 H 1.08997 * 109.47730 * 304.24869 * 5 3 2 30 30 H 0.97003 * 120.00151 * 5.05581 * 6 5 3 31 31 H 1.07994 * 120.26208 * 359.97438 * 8 7 6 32 32 H 1.08010 * 120.65474 * 180.22249 * 9 8 7 33 33 H 1.08001 * 120.42457 * 179.76854 * 10 9 8 34 34 H 0.96999 * 120.00062 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47164 * 299.99977 * 22 21 3 36 36 H 1.08999 * 109.47209 * 179.97438 * 22 21 3 37 37 H 1.09001 * 109.47076 * 59.99331 * 22 21 3 38 38 H 1.08999 * 109.46906 * 180.02562 * 23 21 3 39 39 H 1.08995 * 109.47380 * 299.99983 * 23 21 3 40 40 H 1.09000 * 109.47236 * 60.00423 * 23 21 3 41 41 H 1.08998 * 109.47176 * 299.99680 * 24 21 3 42 42 H 1.09001 * 109.47282 * 59.99797 * 24 21 3 43 43 H 1.08999 * 109.46934 * 179.97438 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2224 2.0538 0.0868 5 6 2.7778 1.5219 -1.3056 6 7 1.8418 1.4973 -2.4323 7 6 2.3199 1.5680 -3.7337 8 6 3.6960 1.6681 -3.9588 9 6 4.1715 1.7340 -5.2591 10 6 3.2613 1.7085 -6.3012 11 6 1.8898 1.6115 -6.0101 12 6 0.9487 1.5839 -7.0640 13 1 1.2864 1.5234 -8.0880 14 6 -0.4217 1.6347 -6.7806 15 7 -0.8285 1.8439 -5.5557 16 14 -1.6684 1.4037 -8.1522 17 1 -2.0917 -0.0188 -8.2019 18 1 -2.8516 2.2635 -7.8958 19 1 -1.0529 1.7825 -9.4495 20 7 1.4695 1.5457 -4.7424 21 6 2.9704 1.4362 1.1840 22 6 4.0762 0.3858 1.0622 23 6 2.2028 1.2198 2.4895 24 6 3.5932 2.8338 1.1835 25 1 -0.3634 -1.0265 -0.0497 26 1 -0.3634 0.4701 0.9137 27 1 -0.3634 0.5562 -0.8641 28 1 3.2833 2.4871 -1.2742 29 1 3.5157 0.7292 -1.4291 30 1 0.8878 1.4318 -2.2690 31 1 4.3834 1.6908 -3.1263 32 1 5.2311 1.8080 -5.4549 33 1 3.6007 1.7620 -7.3252 34 1 -1.7778 1.8795 -5.3594 35 1 3.6329 -0.6100 1.0622 36 1 4.7605 0.4792 1.9054 37 1 4.6230 0.5400 0.1320 38 1 2.8868 1.3133 3.3330 39 1 1.4151 1.9682 2.5763 40 1 1.7594 0.2240 2.4896 41 1 4.1401 2.9876 0.2534 42 1 2.8057 3.5825 1.2700 43 1 4.2769 2.9271 2.0272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320359809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:20 Heat of formation + Delta-G solvation = -39.189690 kcal Electronic energy + Delta-G solvation = -22187.257934 eV Core-core repulsion = 19038.347384 eV Total energy + Delta-G solvation = -3148.910551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63820 -39.80933 -36.75918 -36.38747 -35.02035 -32.36200 -31.33854 -29.18214 -28.25505 -28.04460 -27.31962 -26.81565 -24.21282 -23.25697 -22.11421 -19.89803 -19.27956 -18.11770 -17.55461 -16.98261 -16.70229 -16.33785 -16.01812 -15.60198 -15.19630 -15.11109 -14.70957 -14.54310 -14.44136 -14.19842 -13.87572 -13.68224 -13.10656 -12.99777 -12.81929 -12.74249 -12.70469 -12.55638 -12.44506 -12.27446 -12.23570 -11.91483 -11.73704 -11.55766 -11.42780 -11.24400 -10.66893 -10.40533 -9.84969 -9.43844 -8.35411 -8.22577 -6.47128 1.05551 1.34050 1.40983 1.54799 1.58090 2.24899 2.60242 2.78202 2.91603 3.70082 3.84007 3.95265 4.04447 4.20246 4.29883 4.36674 4.46148 4.50089 4.55829 4.65326 4.70423 4.80160 4.81620 4.83734 4.90818 4.96953 4.99701 5.00392 5.08155 5.09675 5.12407 5.19158 5.32863 5.36196 5.49471 5.51963 5.71763 5.96137 6.06667 6.22549 6.25076 6.55076 6.82472 6.93098 7.20445 8.32962 8.50644 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.004480 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.928459 B = 6247.874931 C = 7164.190243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.390 6.390 3 C 0.095 3.905 4 H 0.068 0.932 5 C 0.127 3.873 6 N -0.731 5.731 7 C 0.395 3.605 8 C -0.367 4.367 9 C -0.029 4.029 10 C -0.344 4.344 11 C 0.262 3.738 12 C -0.475 4.475 13 H 0.086 0.914 14 C 0.030 3.970 15 N -0.757 5.757 16 Si 0.986 3.014 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.255 1.255 20 N -0.568 5.568 21 C -0.067 4.067 22 C -0.138 4.138 23 C -0.134 4.134 24 C -0.146 4.146 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.388 0.612 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.277 0.723 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 -0.085 15.046 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.309 6.309 3 C 0.036 3.964 4 H 0.086 0.914 5 C 0.002 3.998 6 N -0.366 5.366 7 C 0.154 3.846 8 C -0.393 4.393 9 C -0.053 4.053 10 C -0.367 4.367 11 C 0.134 3.866 12 C -0.507 4.507 13 H 0.105 0.895 14 C -0.192 4.192 15 N -0.379 5.379 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.191 1.191 19 H -0.179 1.179 20 N -0.291 5.291 21 C -0.068 4.068 22 C -0.195 4.195 23 C -0.192 4.192 24 C -0.203 4.203 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.072 -0.262 15.454 15.595 hybrid contribution -0.197 0.104 -0.926 0.952 sum 1.875 -0.158 14.528 14.650 Atomic orbital electron populations 1.22933 0.80429 1.03315 1.00072 1.87894 1.20333 1.27711 1.94922 1.22411 0.95638 0.85054 0.93263 0.91383 1.21827 0.92476 1.00926 0.84540 1.44253 1.08453 1.82429 1.01468 1.18953 0.89467 0.89450 0.86737 1.20933 0.93912 1.27183 0.97266 1.21010 0.98649 0.93457 0.92180 1.21696 0.94497 1.22051 0.98458 1.18666 0.91105 0.87035 0.89749 1.19927 0.91582 1.45487 0.93686 0.89549 1.26934 1.01139 0.92356 0.98770 1.70193 1.16554 1.29551 1.21578 0.85151 0.76881 0.78987 0.78351 1.19101 1.19135 1.17863 1.68105 1.35695 1.26697 0.98623 1.20738 0.95180 0.96883 0.93978 1.21827 0.97512 0.98312 1.01837 1.21781 1.00050 1.01740 0.95595 1.21978 1.01106 0.94421 1.02777 0.89044 0.92152 0.95360 0.91295 0.92527 0.77786 0.86606 0.85229 0.87894 0.91265 0.93077 0.91122 0.93250 0.91026 0.92533 0.92756 0.92624 0.92219 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.66 113.37 1.21 1.92 16 2 O -0.39 -11.10 8.93 -148.98 -1.33 -12.43 16 3 C 0.09 2.46 1.54 30.60 0.05 2.50 16 4 H 0.07 1.72 7.61 -2.39 -0.02 1.71 16 5 C 0.13 4.09 3.88 86.38 0.34 4.42 16 6 N -0.73 -30.79 5.65 -344.99 -1.95 -32.74 16 7 C 0.39 20.18 7.65 133.42 1.02 21.20 16 8 C -0.37 -17.26 9.32 22.73 0.21 -17.05 16 9 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 10 C -0.34 -18.13 9.83 22.87 0.22 -17.90 16 11 C 0.26 15.37 6.52 40.18 0.26 15.63 16 12 C -0.47 -27.02 9.13 23.46 0.21 -26.80 16 13 H 0.09 4.62 7.86 -2.91 -0.02 4.60 16 14 C 0.03 1.56 5.47 85.29 0.47 2.03 16 15 N -0.76 -41.78 11.56 21.84 0.25 -41.53 16 16 Si 0.99 39.34 29.57 68.60 2.03 41.37 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 N -0.57 -33.12 7.99 -186.59 -1.49 -34.61 16 21 C -0.07 -1.35 0.63 -52.18 -0.03 -1.38 16 22 C -0.14 -2.84 7.97 71.98 0.57 -2.27 16 23 C -0.13 -2.27 8.33 71.98 0.60 -1.67 16 24 C -0.15 -2.57 8.13 71.98 0.58 -1.98 16 25 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.03 0.78 6.94 -2.38 -0.02 0.76 16 28 H 0.07 2.12 6.18 -2.39 -0.01 2.10 16 29 H 0.06 1.93 6.18 -2.39 -0.01 1.91 16 30 H 0.39 16.61 7.34 -92.71 -0.68 15.93 16 31 H 0.12 4.72 6.67 -2.91 -0.02 4.70 16 32 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.28 13.76 8.29 -92.71 -0.77 12.99 16 35 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.10 6.53 -2.39 -0.02 1.09 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 1.01 7.68 -2.39 -0.02 0.99 16 41 H 0.05 1.08 6.34 -2.39 -0.02 1.06 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.05 342.62 3.77 -63.28 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: 0.31 Total: 39.14 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 5.94 Total: -22.48 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -3.19 Total: -108.88 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.33 Total: -12.43 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -67.05 3.77 -63.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320359809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -67.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds