Wall clock time and date at job start Tue Mar 31 2020 00:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.53000 * 109.46982 * 64.50548 * 3 2 1 5 5 C 1.53006 * 109.46956 * 56.89974 * 4 3 2 6 6 C 1.52995 * 109.47200 * 184.50600 * 3 2 1 7 7 H 1.08998 * 109.47500 * 300.00153 * 6 3 2 8 8 O 1.42901 * 109.46792 * 179.97438 * 6 3 2 9 9 C 1.52998 * 109.47070 * 60.00448 * 6 3 2 10 10 N 1.46496 * 109.47441 * 185.00048 * 9 6 3 11 11 C 1.38818 * 120.00435 * 179.97438 * 10 9 6 12 12 C 1.39804 * 119.58491 * 359.97438 * 11 10 9 13 13 C 1.38596 * 119.49268 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68035 * 359.97438 * 13 12 11 15 15 C 1.40562 * 119.14990 * 359.97438 * 14 13 12 16 16 C 1.41315 * 119.78427 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.40024 * 119.99973 * 180.02562 * 16 15 14 19 19 N 1.30747 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46964 * 59.99642 * 20 18 16 22 22 H 1.48499 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47097 * 299.99623 * 20 18 16 24 24 N 1.31952 * 119.58580 * 179.72138 * 11 10 9 25 25 H 1.09002 * 109.47415 * 294.09075 * 1 2 3 26 26 H 1.09000 * 109.47555 * 54.09168 * 1 2 3 27 27 H 1.09000 * 109.47018 * 174.09225 * 1 2 3 28 28 H 1.08998 * 109.46972 * 239.99899 * 2 1 3 29 29 H 1.08995 * 109.47358 * 119.99921 * 2 1 3 30 30 H 1.08998 * 109.47019 * 304.51048 * 3 2 1 31 31 H 1.08997 * 109.47455 * 176.89954 * 4 3 2 32 32 H 1.09002 * 109.47293 * 296.90319 * 4 3 2 33 33 H 1.09001 * 109.47294 * 295.54381 * 5 4 3 34 34 H 1.09003 * 109.46580 * 55.54435 * 5 4 3 35 35 H 1.09002 * 109.47306 * 175.53591 * 5 4 3 36 36 H 0.96699 * 114.00564 * 300.00057 * 8 6 3 37 37 H 1.09007 * 109.46722 * 304.99781 * 9 6 3 38 38 H 1.09001 * 109.47251 * 64.99472 * 9 6 3 39 39 H 0.97003 * 119.99521 * 359.97438 * 10 9 6 40 40 H 1.07994 * 120.25006 * 359.95480 * 12 11 10 41 41 H 1.07994 * 120.65693 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.42536 * 179.97438 * 14 13 12 43 43 H 0.97004 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6246 2.1303 1.3020 5 6 2.1604 1.3333 2.4932 6 6 3.5657 1.4440 -0.1133 7 1 3.9936 0.9074 0.7335 8 8 4.0420 2.7913 -0.1139 9 6 3.9811 0.7563 -1.4154 10 7 5.4413 0.6510 -1.4679 11 6 6.0557 0.0581 -2.5625 12 6 5.2724 -0.4362 -3.6097 13 6 5.8878 -1.0273 -4.7018 14 6 7.2691 -1.1098 -4.7217 15 6 8.0015 -0.5934 -3.6388 16 6 9.4125 -0.6701 -3.6454 17 1 9.9247 -1.1248 -4.4806 18 6 10.1466 -0.1576 -2.5688 19 7 9.5265 0.3924 -1.5576 20 14 12.0118 -0.2596 -2.5772 21 1 12.5423 0.4736 -3.7546 22 1 12.5464 0.3498 -1.3330 23 1 12.4294 -1.6827 -2.6509 24 7 7.3718 -0.0274 -2.6037 25 1 -0.3634 0.4195 0.9382 26 1 -0.3634 0.6027 -0.8323 27 1 -0.3633 -1.0222 -0.1058 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6122 1.9791 -0.8468 31 1 2.0345 3.1399 1.3265 32 1 0.5370 2.1783 1.3567 33 1 1.6900 0.3502 2.5138 34 1 3.2400 1.2177 2.3968 35 1 1.9331 1.8644 3.4176 36 1 3.7012 3.3287 -0.8421 37 1 3.5433 -0.2412 -1.4551 38 1 3.6282 1.3420 -2.2643 39 1 5.9789 0.9957 -0.7377 40 1 4.1961 -0.3582 -3.5678 41 1 5.3010 -1.4151 -5.5214 42 1 7.7778 -1.5652 -5.5585 43 1 10.0351 0.7478 -0.8119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320490580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:23 Heat of formation + Delta-G solvation = -34.476596 kcal Electronic energy + Delta-G solvation = -21771.047992 eV Core-core repulsion = 18622.341817 eV Total energy + Delta-G solvation = -3148.706175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.23099 -38.02293 -35.58006 -34.53004 -33.13399 -31.30640 -30.47974 -29.76084 -28.14622 -25.63657 -25.22820 -23.39719 -22.54802 -21.32440 -20.32921 -19.40823 -17.35489 -16.57148 -16.23174 -15.93597 -15.24761 -15.00613 -14.66013 -14.46035 -13.99471 -13.61468 -13.29782 -13.05433 -12.95108 -12.79945 -12.68770 -12.35201 -12.00555 -11.82888 -11.80282 -11.44458 -11.33715 -11.12908 -10.97245 -10.73632 -10.61585 -10.54813 -10.44066 -10.26570 -9.90972 -9.71227 -9.43111 -8.83851 -7.86815 -7.45771 -6.45577 -6.27795 -4.43570 2.92920 3.13423 3.15923 3.27686 3.34290 4.01816 4.06847 4.39658 4.66159 4.77131 4.84904 4.88800 5.07150 5.17798 5.25012 5.31519 5.34023 5.51642 5.58826 5.65593 5.75699 5.79651 5.92971 5.97732 6.04109 6.09894 6.11496 6.15755 6.18765 6.23676 6.41006 6.59837 6.90052 6.92984 6.98221 7.29767 7.63321 7.70601 7.85434 7.95738 8.21359 8.41601 8.75205 8.84954 9.17061 10.29775 10.45348 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003941 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.822669 B = 7103.640842 C = 7965.494137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.157 4.157 6 C 0.099 3.901 7 H 0.104 0.896 8 O -0.554 6.554 9 C 0.109 3.891 10 N -0.733 5.733 11 C 0.411 3.589 12 C -0.370 4.370 13 C -0.032 4.032 14 C -0.318 4.318 15 C 0.293 3.707 16 C -0.436 4.436 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.531 5.531 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.372 0.628 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.398 0.602 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.205 2.573 5.815 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.151 4.151 5 C -0.214 4.214 6 C 0.040 3.960 7 H 0.122 0.878 8 O -0.358 6.358 9 C -0.017 4.017 10 N -0.370 5.370 11 C 0.171 3.829 12 C -0.396 4.396 13 C -0.056 4.056 14 C -0.341 4.341 15 C 0.166 3.834 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.154 4.154 19 N -0.336 5.336 20 Si 0.729 3.271 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.190 1.190 24 N -0.253 5.253 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.219 0.781 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.234 0.766 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.544 2.768 7.165 15.570 hybrid contribution 0.096 -0.140 -1.025 1.039 sum -13.448 2.628 6.140 15.015 Atomic orbital electron populations 1.21781 0.95835 1.01490 1.01654 1.21714 0.96000 0.95938 1.02932 1.21835 0.95598 0.97146 0.98821 1.21451 1.00188 0.99662 0.93817 1.21887 1.01766 1.00092 0.97668 1.22240 0.92493 0.83305 0.97968 0.87798 1.86604 1.73433 1.22213 1.53585 1.21842 0.82987 1.00102 0.96768 1.44030 1.03700 1.67162 1.22140 1.18544 0.90304 0.88531 0.85489 1.20584 0.97370 1.21468 1.00141 1.20580 0.94366 0.95237 0.95459 1.21526 0.93693 1.16051 1.02826 1.18198 0.93180 0.86272 0.85786 1.19548 0.90176 1.33224 1.03816 0.89974 1.26047 1.00417 0.93908 0.95013 1.70149 1.36585 1.22509 1.04369 0.86444 0.82724 0.79480 0.78426 1.19034 1.20350 1.19038 1.68223 1.04573 1.24815 1.27642 0.92722 0.92836 0.92862 0.91159 0.91287 0.90877 0.91389 0.92140 0.92624 0.92169 0.93110 0.78090 0.92068 0.93187 0.76629 0.89428 0.89047 0.88774 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.50 37.16 0.35 -0.87 16 2 C -0.13 -1.22 4.89 -26.73 -0.13 -1.35 16 3 C -0.11 -1.11 1.94 -90.62 -0.18 -1.29 16 4 C -0.11 -1.04 5.28 -26.73 -0.14 -1.18 16 5 C -0.16 -1.47 9.16 37.16 0.34 -1.13 16 6 C 0.10 1.23 2.30 -26.73 -0.06 1.17 16 7 H 0.10 1.39 6.41 -51.93 -0.33 1.06 16 8 O -0.55 -7.34 12.56 -35.23 -0.44 -7.78 16 9 C 0.11 1.68 4.31 -4.04 -0.02 1.66 16 10 N -0.73 -15.07 5.67 -60.39 -0.34 -15.41 16 11 C 0.41 10.30 7.65 -155.33 -1.19 9.11 16 12 C -0.37 -8.69 9.34 -38.86 -0.36 -9.06 16 13 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 14 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 15 C 0.29 8.34 6.55 -85.00 -0.56 7.78 16 16 C -0.44 -12.05 9.14 -37.74 -0.34 -12.40 16 17 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 18 C 0.07 1.87 5.50 -17.34 -0.10 1.77 16 19 N -0.71 -19.46 11.46 55.55 0.64 -18.82 16 20 Si 0.90 19.08 29.56 -169.99 -5.02 14.06 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 N -0.53 -15.04 7.89 -10.32 -0.08 -15.12 16 25 H 0.05 0.42 6.92 -51.93 -0.36 0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.73 6.10 -51.93 -0.32 0.42 16 29 H 0.07 0.66 6.22 -51.93 -0.32 0.34 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 7.59 -51.93 -0.39 0.27 16 32 H 0.06 0.50 6.84 -51.93 -0.36 0.14 16 33 H 0.05 0.49 6.53 -51.93 -0.34 0.15 16 34 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.37 3.86 9.04 45.56 0.41 4.27 16 37 H 0.06 0.93 5.86 -51.92 -0.30 0.63 16 38 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.40 8.50 8.59 -40.82 -0.35 8.15 16 40 H 0.09 1.82 6.68 -52.49 -0.35 1.47 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -30.71 339.82 -9.13 -39.84 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.84 Total: 13.67 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.16 Total: -15.56 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.21 Total: -49.35 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.44 Total: -7.78 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.71 -9.13 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320490580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.362 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds