Wall clock time and date at job start Tue Mar 31 2020 00:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.53000 * 109.46982 * 64.50548 * 3 2 1 5 5 C 1.53006 * 109.46956 * 56.89974 * 4 3 2 6 6 C 1.52995 * 109.47200 * 184.50600 * 3 2 1 7 7 H 1.08998 * 109.47500 * 300.00153 * 6 3 2 8 8 O 1.42901 * 109.46792 * 179.97438 * 6 3 2 9 9 C 1.52998 * 109.47070 * 60.00448 * 6 3 2 10 10 N 1.46496 * 109.47441 * 185.00048 * 9 6 3 11 11 C 1.38818 * 120.00435 * 179.97438 * 10 9 6 12 12 C 1.39804 * 119.58491 * 359.97438 * 11 10 9 13 13 C 1.38596 * 119.49268 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68035 * 359.97438 * 13 12 11 15 15 C 1.40562 * 119.14990 * 359.97438 * 14 13 12 16 16 C 1.41315 * 119.78427 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99779 * 359.97438 * 16 15 14 18 18 C 1.40024 * 119.99973 * 180.02562 * 16 15 14 19 19 N 1.30747 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46964 * 59.99642 * 20 18 16 22 22 H 1.48499 * 109.46840 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47097 * 299.99623 * 20 18 16 24 24 N 1.31952 * 119.58580 * 179.72138 * 11 10 9 25 25 H 1.09002 * 109.47415 * 294.09075 * 1 2 3 26 26 H 1.09000 * 109.47555 * 54.09168 * 1 2 3 27 27 H 1.09000 * 109.47018 * 174.09225 * 1 2 3 28 28 H 1.08998 * 109.46972 * 239.99899 * 2 1 3 29 29 H 1.08995 * 109.47358 * 119.99921 * 2 1 3 30 30 H 1.08998 * 109.47019 * 304.51048 * 3 2 1 31 31 H 1.08997 * 109.47455 * 176.89954 * 4 3 2 32 32 H 1.09002 * 109.47293 * 296.90319 * 4 3 2 33 33 H 1.09001 * 109.47294 * 295.54381 * 5 4 3 34 34 H 1.09003 * 109.46580 * 55.54435 * 5 4 3 35 35 H 1.09002 * 109.47306 * 175.53591 * 5 4 3 36 36 H 0.96699 * 114.00564 * 300.00057 * 8 6 3 37 37 H 1.09007 * 109.46722 * 304.99781 * 9 6 3 38 38 H 1.09001 * 109.47251 * 64.99472 * 9 6 3 39 39 H 0.97003 * 119.99521 * 359.97438 * 10 9 6 40 40 H 1.07994 * 120.25006 * 359.95480 * 12 11 10 41 41 H 1.07994 * 120.65693 * 180.02562 * 13 12 11 42 42 H 1.07998 * 120.42536 * 179.97438 * 14 13 12 43 43 H 0.97004 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6246 2.1303 1.3020 5 6 2.1604 1.3333 2.4932 6 6 3.5657 1.4440 -0.1133 7 1 3.9936 0.9074 0.7335 8 8 4.0420 2.7913 -0.1139 9 6 3.9811 0.7563 -1.4154 10 7 5.4413 0.6510 -1.4679 11 6 6.0557 0.0581 -2.5625 12 6 5.2724 -0.4362 -3.6097 13 6 5.8878 -1.0273 -4.7018 14 6 7.2691 -1.1098 -4.7217 15 6 8.0015 -0.5934 -3.6388 16 6 9.4125 -0.6701 -3.6454 17 1 9.9247 -1.1248 -4.4806 18 6 10.1466 -0.1576 -2.5688 19 7 9.5265 0.3924 -1.5576 20 14 12.0118 -0.2596 -2.5772 21 1 12.5423 0.4736 -3.7546 22 1 12.5464 0.3498 -1.3330 23 1 12.4294 -1.6827 -2.6509 24 7 7.3718 -0.0274 -2.6037 25 1 -0.3634 0.4195 0.9382 26 1 -0.3634 0.6027 -0.8323 27 1 -0.3633 -1.0222 -0.1058 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6122 1.9791 -0.8468 31 1 2.0345 3.1399 1.3265 32 1 0.5370 2.1783 1.3567 33 1 1.6900 0.3502 2.5138 34 1 3.2400 1.2177 2.3968 35 1 1.9331 1.8644 3.4176 36 1 3.7012 3.3287 -0.8421 37 1 3.5433 -0.2412 -1.4551 38 1 3.6282 1.3420 -2.2643 39 1 5.9789 0.9957 -0.7377 40 1 4.1961 -0.3582 -3.5678 41 1 5.3010 -1.4151 -5.5214 42 1 7.7778 -1.5652 -5.5585 43 1 10.0351 0.7478 -0.8119 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320490580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:23 Heat of formation + Delta-G solvation = -54.172886 kcal Electronic energy + Delta-G solvation = -21771.902087 eV Core-core repulsion = 18622.341817 eV Total energy + Delta-G solvation = -3149.560271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43328 -39.69422 -36.68198 -36.04632 -34.97469 -32.38480 -32.01261 -31.35207 -29.53773 -27.31185 -26.58226 -24.21494 -23.80085 -23.08694 -22.12435 -20.26437 -19.26656 -18.15996 -17.38822 -16.97906 -16.59207 -16.40018 -16.14985 -15.85720 -15.63123 -14.93619 -14.73329 -14.50705 -14.10526 -13.88642 -13.74581 -13.64001 -13.38028 -13.10757 -12.79504 -12.73810 -12.72273 -12.60710 -12.28299 -12.20209 -12.10502 -11.75938 -11.55539 -11.32291 -11.26184 -11.17164 -10.74521 -10.60736 -9.83202 -9.43311 -8.27807 -8.21844 -6.48119 1.07349 1.35056 1.41192 1.53618 1.59636 2.25329 2.61813 2.93203 3.45374 3.68506 3.86768 3.96210 4.04639 4.22623 4.26206 4.37557 4.46098 4.47707 4.56879 4.63322 4.69341 4.78192 4.87439 4.92804 4.97550 4.99777 5.00851 5.10876 5.12551 5.16931 5.32077 5.35131 5.37535 5.37773 5.44063 5.63043 5.71946 5.96548 6.07782 6.22592 6.56741 6.79664 6.84396 6.96219 7.22402 8.35642 8.52081 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003941 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.822669 B = 7103.640842 C = 7965.494137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.110 4.110 5 C -0.158 4.158 6 C 0.110 3.890 7 H 0.092 0.908 8 O -0.569 6.569 9 C 0.108 3.892 10 N -0.730 5.730 11 C 0.392 3.608 12 C -0.368 4.368 13 C -0.029 4.029 14 C -0.345 4.345 15 C 0.259 3.741 16 C -0.474 4.474 17 H 0.087 0.913 18 C 0.026 3.974 19 N -0.753 5.753 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.269 1.269 23 H -0.259 1.259 24 N -0.567 5.567 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.385 0.615 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.391 0.609 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 2.728 5.840 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.123 4.123 4 C -0.147 4.147 5 C -0.215 4.215 6 C 0.051 3.949 7 H 0.110 0.890 8 O -0.376 6.376 9 C -0.017 4.017 10 N -0.364 5.364 11 C 0.151 3.849 12 C -0.393 4.393 13 C -0.054 4.054 14 C -0.368 4.368 15 C 0.131 3.869 16 C -0.506 4.506 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.375 5.375 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.183 1.183 24 N -0.289 5.289 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.225 0.775 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.944 2.933 7.190 16.841 hybrid contribution 0.354 -0.174 -1.023 1.096 sum -14.590 2.760 6.167 16.078 Atomic orbital electron populations 1.21756 0.94469 1.01925 1.02291 1.21707 0.97170 0.95432 1.02313 1.21750 0.93127 0.97695 0.99755 1.21427 1.01110 0.99034 0.93124 1.21890 1.00662 1.00698 0.98234 1.22130 0.94370 0.82612 0.95799 0.89005 1.86581 1.74056 1.22566 1.54376 1.22125 0.79853 1.00979 0.98743 1.44245 1.05683 1.65943 1.20575 1.19027 0.89986 0.88763 0.87082 1.20933 0.98822 1.20192 0.99391 1.21006 0.93835 0.94101 0.96422 1.21693 0.94976 1.17293 1.02845 1.18688 0.94204 0.87101 0.86860 1.19932 0.90751 1.34822 1.05054 0.89503 1.26975 1.05759 0.92855 0.94013 1.70260 1.38811 1.23299 1.05094 0.85215 0.75628 0.79724 0.78773 1.18360 1.19360 1.18322 1.68193 1.06347 1.26052 1.28356 0.91950 0.92340 0.92577 0.92121 0.91626 0.89684 0.92018 0.90474 0.91957 0.93921 0.92430 0.76645 0.91468 0.92414 0.77477 0.86404 0.85234 0.87961 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.50 71.98 0.68 -1.33 16 2 C -0.13 -2.19 4.89 30.59 0.15 -2.04 16 3 C -0.10 -1.81 1.94 -10.79 -0.02 -1.83 16 4 C -0.11 -1.78 5.28 30.60 0.16 -1.62 16 5 C -0.16 -2.74 9.16 71.98 0.66 -2.08 16 6 C 0.11 2.63 2.30 30.59 0.07 2.70 16 7 H 0.09 2.45 6.41 -2.39 -0.02 2.43 16 8 O -0.57 -14.62 12.56 -148.98 -1.87 -16.49 16 9 C 0.11 3.18 4.31 86.38 0.37 3.55 16 10 N -0.73 -30.11 5.67 -344.98 -1.96 -32.07 16 11 C 0.39 19.78 7.65 133.42 1.02 20.80 16 12 C -0.37 -16.84 9.34 22.73 0.21 -16.62 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.35 -18.06 9.83 22.87 0.22 -17.83 16 15 C 0.26 15.18 6.55 40.18 0.26 15.44 16 16 C -0.47 -27.02 9.14 23.46 0.21 -26.80 16 17 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 18 C 0.03 1.37 5.50 85.29 0.47 1.83 16 19 N -0.75 -42.16 11.46 21.84 0.25 -41.91 16 20 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 N -0.57 -33.02 7.89 -186.58 -1.47 -34.49 16 25 H 0.06 0.76 6.92 -2.39 -0.02 0.75 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.15 6.10 -2.39 -0.01 1.14 16 29 H 0.07 1.16 6.22 -2.39 -0.01 1.15 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.10 7.59 -2.39 -0.02 1.08 16 32 H 0.08 1.03 6.84 -2.39 -0.02 1.01 16 33 H 0.06 0.99 6.53 -2.39 -0.02 0.97 16 34 H 0.04 0.89 6.30 -2.39 -0.02 0.87 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.38 7.48 9.04 -74.06 -0.67 6.81 16 37 H 0.07 1.94 5.86 -2.38 -0.01 1.93 16 38 H 0.06 1.64 7.92 -2.39 -0.02 1.62 16 39 H 0.39 17.12 8.59 -92.71 -0.80 16.33 16 40 H 0.12 4.58 6.68 -2.91 -0.02 4.57 16 41 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 43 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -67.76 339.82 1.25 -66.51 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.44 Total: 43.74 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.71 Total: -26.96 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -3.18 Total: -108.47 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.87 Total: -16.49 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -67.76 1.25 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320490580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.340 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds