Wall clock time and date at job start Tue Mar 31 2020 00:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47022 * 2 1 4 4 O 1.42907 * 109.47324 * 60.57773 * 3 2 1 5 5 C 1.52999 * 109.47130 * 180.57614 * 3 2 1 6 6 C 1.53003 * 109.47174 * 305.00125 * 5 3 2 7 7 C 1.53004 * 109.47401 * 300.57774 * 3 2 1 8 8 C 1.52993 * 109.46956 * 179.97438 * 7 3 2 9 9 N 1.46510 * 109.46831 * 177.11900 * 8 7 3 10 10 C 1.38817 * 119.99763 * 180.02562 * 9 8 7 11 11 C 1.39791 * 119.58910 * 359.97438 * 10 9 8 12 12 C 1.38593 * 119.49532 * 180.02562 * 11 10 9 13 13 C 1.38392 * 118.67900 * 359.97438 * 12 11 10 14 14 C 1.40555 * 119.14778 * 0.02562 * 13 12 11 15 15 C 1.41322 * 119.78192 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99881 * 9.07854 * 15 14 13 17 17 C 1.40025 * 119.99705 * 189.07046 * 15 14 13 18 18 N 1.30741 * 119.99737 * 195.99120 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 15.72352 * 17 15 14 20 20 H 1.48501 * 109.47218 * 270.27118 * 19 17 15 21 21 H 1.48499 * 109.47296 * 30.26899 * 19 17 15 22 22 H 1.48500 * 109.47176 * 150.27199 * 19 17 15 23 23 N 1.31961 * 119.57996 * 180.29542 * 10 9 8 24 24 H 1.08998 * 109.47020 * 305.78222 * 1 2 3 25 25 H 1.09000 * 109.46785 * 65.78254 * 1 2 3 26 26 H 1.09000 * 109.47119 * 185.78045 * 1 2 3 27 27 H 1.08996 * 109.47142 * 239.99899 * 2 1 3 28 28 H 1.08999 * 109.46814 * 119.99858 * 2 1 3 29 29 H 0.96692 * 113.99956 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47174 * 64.99796 * 5 3 2 31 31 H 1.08995 * 109.47379 * 185.00472 * 5 3 2 32 32 H 1.09004 * 109.46908 * 300.00432 * 6 5 3 33 33 H 1.09004 * 109.46865 * 59.99745 * 6 5 3 34 34 H 1.08997 * 109.47262 * 179.97438 * 6 5 3 35 35 H 1.09003 * 109.46831 * 59.94775 * 7 3 2 36 36 H 1.08999 * 109.46634 * 299.95172 * 7 3 2 37 37 H 1.09000 * 109.47508 * 57.12068 * 8 7 3 38 38 H 1.08999 * 109.47553 * 297.11152 * 8 7 3 39 39 H 0.96996 * 119.99828 * 359.97438 * 9 8 7 40 40 H 1.08004 * 120.25440 * 0.04731 * 11 10 9 41 41 H 1.07996 * 120.66365 * 179.97438 * 12 11 10 42 42 H 1.07996 * 120.42733 * 180.02562 * 13 12 11 43 43 H 0.97003 * 120.00262 * 354.65932 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5748 2.1122 1.1735 5 6 3.5699 1.4425 -0.0145 6 6 4.0912 0.6112 1.1595 7 6 1.5182 2.1680 -1.2419 8 6 2.0277 3.6106 -1.2415 9 7 1.5852 4.2851 -2.4645 10 6 1.9290 5.6111 -2.6890 11 6 2.6973 6.2948 -1.7422 12 6 3.0390 7.6188 -1.9680 13 6 2.6059 8.2270 -3.1332 14 6 1.8361 7.4865 -4.0468 15 6 1.3863 8.0944 -5.2406 16 1 1.7523 9.0712 -5.5202 17 6 0.4663 7.4301 -6.0610 18 7 0.2848 7.8260 -7.2937 19 14 -0.4962 5.9736 -5.3964 20 1 0.2631 4.7224 -5.6474 21 1 -0.7034 6.1422 -3.9356 22 1 -1.8135 5.8984 -6.0778 23 7 1.5211 6.2123 -3.7906 24 1 -0.3633 0.6009 0.8337 25 1 -0.3633 0.4216 -0.9372 26 1 -0.3633 -1.0224 0.1035 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8604 3.0336 1.2398 30 1 3.9244 1.0113 -0.9507 31 1 3.9341 2.4659 0.0751 32 1 3.7366 1.0423 2.0957 33 1 3.7269 -0.4123 1.0699 34 1 5.1811 0.6108 1.1489 35 1 0.4282 2.1671 -1.2320 36 1 1.8738 1.6576 -2.1370 37 1 3.1169 3.6113 -1.2000 38 1 1.6306 4.1360 -0.3730 39 1 1.0526 3.8048 -3.1176 40 1 3.0224 5.7950 -0.8416 41 1 3.6314 8.1651 -1.2490 42 1 2.8562 9.2574 -3.3380 43 1 0.7286 8.6258 -7.6166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321771345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:01 Heat of formation + Delta-G solvation = -52.091951 kcal Electronic energy + Delta-G solvation = -21880.081574 eV Core-core repulsion = 18730.611539 eV Total energy + Delta-G solvation = -3149.470035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56581 -38.59784 -35.44511 -33.78602 -33.50378 -32.01286 -31.25217 -30.68513 -28.40600 -25.54803 -25.29503 -23.12460 -22.79517 -21.76966 -20.29752 -19.92674 -18.29054 -16.95349 -16.30220 -15.64866 -15.24976 -15.09662 -14.90370 -14.49911 -14.24663 -13.86413 -13.84501 -13.46927 -13.10480 -12.80873 -12.47461 -12.28415 -12.16846 -12.07929 -11.88558 -11.78165 -11.64854 -11.35229 -11.10981 -10.96633 -10.76875 -10.61935 -10.34505 -10.12831 -9.93330 -9.72696 -9.40718 -8.92278 -8.41044 -7.75091 -7.22962 -6.84203 -4.72397 2.71788 2.85861 3.53989 3.65732 3.78108 3.98674 4.07814 4.41512 4.51094 4.54943 4.66482 4.76113 4.97698 5.06222 5.18321 5.24692 5.30217 5.39092 5.53933 5.59164 5.60922 5.66220 5.74227 5.83673 5.89133 5.90596 5.96346 6.02433 6.10569 6.12942 6.24657 6.30758 6.52762 6.64583 6.66054 7.28922 7.47489 7.50497 7.52804 7.64032 7.92261 8.05181 8.33343 8.50370 8.77376 9.66106 10.02669 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.004350 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.981829 B = 6435.298027 C = 7303.464169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.141 3.859 4 O -0.557 6.557 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.162 4.162 8 C 0.136 3.864 9 N -0.740 5.740 10 C 0.437 3.563 11 C -0.366 4.366 12 C -0.019 4.019 13 C -0.307 4.307 14 C 0.288 3.712 15 C -0.481 4.481 16 H 0.082 0.918 17 C 0.050 3.950 18 N -0.806 5.806 19 Si 1.147 2.853 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.331 1.331 23 N -0.617 5.617 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.376 0.624 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.394 0.606 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -13.894 13.494 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.100 3.900 4 O -0.363 6.363 5 C -0.192 4.192 6 C -0.207 4.207 7 C -0.200 4.200 8 C 0.010 3.990 9 N -0.376 5.376 10 C 0.199 3.801 11 C -0.391 4.391 12 C -0.043 4.043 13 C -0.330 4.330 14 C 0.164 3.836 15 C -0.513 4.513 16 H 0.100 0.900 17 C -0.172 4.172 18 N -0.427 5.427 19 Si 0.981 3.019 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.264 1.264 23 N -0.345 5.345 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.224 0.776 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.767 -15.955 12.680 20.456 hybrid contribution 1.958 2.288 0.483 3.050 sum 3.724 -13.666 13.163 19.337 Atomic orbital electron populations 1.21774 0.95288 1.01366 1.02554 1.21552 0.96790 0.93867 1.02498 1.21113 0.92037 0.92633 0.84193 1.86504 1.77618 1.29138 1.43084 1.22290 0.95645 1.01493 0.99770 1.21771 1.00281 1.00048 0.98619 1.22546 1.02686 0.95603 0.99126 1.21185 0.98722 0.91195 0.87876 1.44207 1.60714 1.09905 1.22819 1.18083 0.88567 0.83940 0.89505 1.20442 1.18096 0.97229 1.03370 1.20693 0.94670 0.93598 0.95309 1.21415 1.12816 1.00369 0.98385 1.18187 0.87860 0.86061 0.91526 1.20691 1.22135 1.04587 1.03918 0.90018 1.27692 0.94749 1.02737 0.91986 1.70621 1.37292 1.20594 1.14222 0.82049 0.71827 0.73301 0.74708 1.21629 1.20699 1.26374 1.66231 1.33776 1.12659 1.21854 0.91687 0.92596 0.93127 0.90922 0.90928 0.77605 0.91024 0.91108 0.92135 0.92534 0.93040 0.90068 0.90426 0.92417 0.92794 0.77151 0.88440 0.88285 0.88200 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.30 37.16 0.35 -1.05 16 2 C -0.11 -0.96 4.70 -26.73 -0.13 -1.09 16 3 C 0.14 1.33 0.52 -90.62 -0.05 1.28 16 4 O -0.56 -5.66 11.73 -35.23 -0.41 -6.08 16 5 C -0.15 -1.35 4.70 -26.73 -0.13 -1.48 16 6 C -0.15 -1.21 9.32 37.16 0.35 -0.87 16 7 C -0.16 -1.74 4.23 -26.73 -0.11 -1.85 16 8 C 0.14 1.80 4.23 -4.04 -0.02 1.78 16 9 N -0.74 -13.44 5.72 -60.39 -0.35 -13.79 16 10 C 0.44 9.86 7.65 -155.33 -1.19 8.67 16 11 C -0.37 -7.71 9.34 -38.87 -0.36 -8.08 16 12 C -0.02 -0.40 10.15 -39.39 -0.40 -0.80 16 13 C -0.31 -7.48 9.83 -38.65 -0.38 -7.86 16 14 C 0.29 7.73 6.27 -85.00 -0.53 7.20 16 15 C -0.48 -13.43 9.51 -37.74 -0.36 -13.79 16 16 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 17 C 0.05 1.39 5.51 -17.35 -0.10 1.29 16 18 N -0.81 -22.28 13.65 55.55 0.76 -21.53 16 19 Si 1.15 28.49 25.92 -169.99 -4.41 24.09 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -7.06 6.54 56.52 0.37 -6.69 16 22 H -0.33 -8.05 7.11 56.52 0.40 -7.65 16 23 N -0.62 -15.95 5.05 -10.33 -0.05 -16.00 16 24 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 25 H 0.06 0.52 6.74 -51.93 -0.35 0.17 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 6.38 -51.93 -0.33 0.29 16 29 H 0.38 3.14 7.40 45.56 0.34 3.48 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.64 6.64 -51.93 -0.34 0.29 16 32 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 33 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.92 6.55 -51.93 -0.34 0.58 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.75 6.17 -51.93 -0.32 0.43 16 38 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 39 H 0.39 7.07 8.59 -40.82 -0.35 6.72 16 40 H 0.10 1.76 6.68 -52.48 -0.35 1.41 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.28 7.50 8.73 -40.82 -0.36 7.14 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -30.18 335.27 -8.55 -38.73 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.09 Total: 6.16 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.06 Total: -16.64 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.36 Total: -51.32 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.41 Total: -6.08 kcal Atomic # 14 Polarization: 28.49 SS G_CDS: -4.41 Total: 24.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.18 -8.55 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321771345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.359 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds