Wall clock time and date at job start Tue Mar 31 2020 00:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47022 * 2 1 4 4 O 1.42907 * 109.47324 * 60.57773 * 3 2 1 5 5 C 1.52999 * 109.47130 * 180.57614 * 3 2 1 6 6 C 1.53003 * 109.47174 * 305.00125 * 5 3 2 7 7 C 1.53004 * 109.47401 * 300.57774 * 3 2 1 8 8 C 1.52993 * 109.46956 * 179.97438 * 7 3 2 9 9 N 1.46510 * 109.46831 * 177.11900 * 8 7 3 10 10 C 1.38817 * 119.99763 * 180.02562 * 9 8 7 11 11 C 1.39791 * 119.58910 * 359.97438 * 10 9 8 12 12 C 1.38593 * 119.49532 * 180.02562 * 11 10 9 13 13 C 1.38392 * 118.67900 * 359.97438 * 12 11 10 14 14 C 1.40555 * 119.14778 * 0.02562 * 13 12 11 15 15 C 1.41322 * 119.78192 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99881 * 9.07854 * 15 14 13 17 17 C 1.40025 * 119.99705 * 189.07046 * 15 14 13 18 18 N 1.30741 * 119.99737 * 195.99120 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 15.72352 * 17 15 14 20 20 H 1.48501 * 109.47218 * 270.27118 * 19 17 15 21 21 H 1.48499 * 109.47296 * 30.26899 * 19 17 15 22 22 H 1.48500 * 109.47176 * 150.27199 * 19 17 15 23 23 N 1.31961 * 119.57996 * 180.29542 * 10 9 8 24 24 H 1.08998 * 109.47020 * 305.78222 * 1 2 3 25 25 H 1.09000 * 109.46785 * 65.78254 * 1 2 3 26 26 H 1.09000 * 109.47119 * 185.78045 * 1 2 3 27 27 H 1.08996 * 109.47142 * 239.99899 * 2 1 3 28 28 H 1.08999 * 109.46814 * 119.99858 * 2 1 3 29 29 H 0.96692 * 113.99956 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47174 * 64.99796 * 5 3 2 31 31 H 1.08995 * 109.47379 * 185.00472 * 5 3 2 32 32 H 1.09004 * 109.46908 * 300.00432 * 6 5 3 33 33 H 1.09004 * 109.46865 * 59.99745 * 6 5 3 34 34 H 1.08997 * 109.47262 * 179.97438 * 6 5 3 35 35 H 1.09003 * 109.46831 * 59.94775 * 7 3 2 36 36 H 1.08999 * 109.46634 * 299.95172 * 7 3 2 37 37 H 1.09000 * 109.47508 * 57.12068 * 8 7 3 38 38 H 1.08999 * 109.47553 * 297.11152 * 8 7 3 39 39 H 0.96996 * 119.99828 * 359.97438 * 9 8 7 40 40 H 1.08004 * 120.25440 * 0.04731 * 11 10 9 41 41 H 1.07996 * 120.66365 * 179.97438 * 12 11 10 42 42 H 1.07996 * 120.42733 * 180.02562 * 13 12 11 43 43 H 0.97003 * 120.00262 * 354.65932 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5748 2.1122 1.1735 5 6 3.5699 1.4425 -0.0145 6 6 4.0912 0.6112 1.1595 7 6 1.5182 2.1680 -1.2419 8 6 2.0277 3.6106 -1.2415 9 7 1.5852 4.2851 -2.4645 10 6 1.9290 5.6111 -2.6890 11 6 2.6973 6.2948 -1.7422 12 6 3.0390 7.6188 -1.9680 13 6 2.6059 8.2270 -3.1332 14 6 1.8361 7.4865 -4.0468 15 6 1.3863 8.0944 -5.2406 16 1 1.7523 9.0712 -5.5202 17 6 0.4663 7.4301 -6.0610 18 7 0.2848 7.8260 -7.2937 19 14 -0.4962 5.9736 -5.3964 20 1 0.2631 4.7224 -5.6474 21 1 -0.7034 6.1422 -3.9356 22 1 -1.8135 5.8984 -6.0778 23 7 1.5211 6.2123 -3.7906 24 1 -0.3633 0.6009 0.8337 25 1 -0.3633 0.4216 -0.9372 26 1 -0.3633 -1.0224 0.1035 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8604 3.0336 1.2398 30 1 3.9244 1.0113 -0.9507 31 1 3.9341 2.4659 0.0751 32 1 3.7366 1.0423 2.0957 33 1 3.7269 -0.4123 1.0699 34 1 5.1811 0.6108 1.1489 35 1 0.4282 2.1671 -1.2320 36 1 1.8738 1.6576 -2.1370 37 1 3.1169 3.6113 -1.2000 38 1 1.6306 4.1360 -0.3730 39 1 1.0526 3.8048 -3.1176 40 1 3.0224 5.7950 -0.8416 41 1 3.6314 8.1651 -1.2490 42 1 2.8562 9.2574 -3.3380 43 1 0.7286 8.6258 -7.6166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321771345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:00 Heat of formation + Delta-G solvation = -71.097245 kcal Electronic energy + Delta-G solvation = -21880.905705 eV Core-core repulsion = 18730.611539 eV Total energy + Delta-G solvation = -3150.294166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69356 -40.05894 -36.93761 -35.44497 -34.49041 -32.95778 -32.67756 -32.18477 -29.87193 -27.18039 -26.45682 -23.96264 -23.79202 -23.47439 -21.99806 -20.72499 -20.26963 -18.33967 -17.41517 -16.98607 -16.35110 -16.27601 -16.15674 -15.83421 -15.69480 -15.21521 -14.77988 -14.63340 -14.51595 -14.42174 -14.14117 -13.62705 -13.44343 -12.99208 -12.81700 -12.77330 -12.70684 -12.57037 -12.32485 -12.19600 -12.01707 -11.78314 -11.71576 -11.67712 -11.23854 -11.07511 -10.75886 -10.66066 -10.25939 -9.70712 -9.24674 -8.52790 -6.76251 0.82371 1.04784 1.53184 1.69649 1.98006 2.40903 2.45111 2.68289 3.36937 3.69254 3.70863 3.83523 3.93225 4.15865 4.20782 4.26480 4.39250 4.48872 4.58133 4.60612 4.63308 4.74212 4.76387 4.83895 4.85844 4.90301 4.95923 5.08424 5.09802 5.15409 5.22471 5.30014 5.36481 5.41105 5.48102 5.50681 5.52935 5.72655 5.87112 5.99673 6.21473 6.59742 6.62463 6.86746 6.92570 7.78206 7.97471 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.004350 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.981829 B = 6435.298027 C = 7303.464169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C 0.147 3.853 4 O -0.567 6.567 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.153 4.153 8 C 0.132 3.868 9 N -0.735 5.735 10 C 0.418 3.582 11 C -0.347 4.347 12 C -0.011 4.011 13 C -0.334 4.334 14 C 0.273 3.727 15 C -0.521 4.521 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.832 5.832 19 Si 1.184 2.816 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.326 1.326 23 N -0.639 5.639 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.383 0.617 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -15.945 16.149 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.106 3.894 4 O -0.375 6.375 5 C -0.191 4.191 6 C -0.205 4.205 7 C -0.191 4.191 8 C 0.008 3.992 9 N -0.370 5.370 10 C 0.180 3.820 11 C -0.372 4.372 12 C -0.035 4.035 13 C -0.357 4.357 14 C 0.148 3.852 15 C -0.554 4.554 16 H 0.081 0.919 17 C -0.195 4.195 18 N -0.455 5.455 19 Si 1.016 2.984 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.259 1.259 23 N -0.368 5.368 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.232 0.768 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.120 0.880 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.793 -18.039 15.362 23.858 hybrid contribution 1.766 2.828 -0.066 3.334 sum 4.559 -15.212 15.296 22.048 Atomic orbital electron populations 1.21755 0.95698 1.01711 1.01730 1.21596 0.96412 0.93591 1.03236 1.21093 0.92470 0.92665 0.83217 1.86508 1.77870 1.29825 1.43298 1.22280 0.94953 1.01647 1.00200 1.21750 1.00627 1.00138 0.98002 1.22495 1.02312 0.94180 1.00162 1.21466 0.99424 0.92235 0.86039 1.44473 1.59886 1.08410 1.24187 1.18571 0.88701 0.85642 0.89082 1.20966 1.15473 0.96987 1.03770 1.21160 0.93687 0.93960 0.94678 1.21556 1.13817 1.00793 0.99522 1.18334 0.88335 0.86886 0.91689 1.20669 1.24248 1.04654 1.05795 0.91905 1.28436 0.95044 1.04023 0.91972 1.70644 1.38848 1.21338 1.14669 0.81549 0.71292 0.71933 0.73654 1.21043 1.21591 1.25929 1.66150 1.34512 1.12476 1.23622 0.93048 0.92948 0.92147 0.89810 0.90577 0.76777 0.90734 0.91143 0.92692 0.92077 0.92502 0.90643 0.89982 0.91313 0.91789 0.77174 0.84459 0.84089 0.88041 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.30 71.98 0.67 -1.78 16 2 C -0.11 -1.64 4.70 30.60 0.14 -1.50 16 3 C 0.15 2.31 0.52 -10.79 -0.01 2.31 16 4 O -0.57 -9.91 11.73 -148.98 -1.75 -11.66 16 5 C -0.15 -2.18 4.70 30.59 0.14 -2.04 16 6 C -0.15 -1.96 9.32 71.98 0.67 -1.29 16 7 C -0.15 -2.84 4.23 30.59 0.13 -2.71 16 8 C 0.13 3.01 4.23 86.37 0.37 3.37 16 9 N -0.74 -24.60 5.72 -344.98 -1.97 -26.57 16 10 C 0.42 17.82 7.65 133.42 1.02 18.84 16 11 C -0.35 -13.18 9.34 22.73 0.21 -12.97 16 12 C -0.01 -0.43 10.15 22.39 0.23 -0.20 16 13 C -0.33 -16.01 9.83 22.87 0.22 -15.79 16 14 C 0.27 14.79 6.27 40.18 0.25 15.04 16 15 C -0.52 -30.25 9.51 23.46 0.22 -30.03 16 16 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 17 C 0.02 1.26 5.51 85.29 0.47 1.73 16 18 N -0.83 -47.72 13.65 21.84 0.30 -47.42 16 19 Si 1.18 58.73 25.92 68.60 1.78 60.51 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -14.45 6.54 99.48 0.65 -13.80 16 22 H -0.33 -15.68 7.11 99.48 0.71 -14.98 16 23 N -0.64 -32.53 5.05 -186.59 -0.94 -33.47 16 24 H 0.05 0.97 7.53 -2.39 -0.02 0.95 16 25 H 0.05 0.87 6.74 -2.39 -0.02 0.85 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.09 6.38 -2.39 -0.02 1.08 16 29 H 0.38 5.15 7.40 -74.06 -0.55 4.60 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.01 6.64 -2.39 -0.02 0.99 16 32 H 0.05 0.79 7.82 -2.38 -0.02 0.77 16 33 H 0.06 0.75 6.36 -2.38 -0.02 0.73 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.52 6.55 -2.39 -0.02 1.50 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.47 6.17 -2.39 -0.01 1.46 16 38 H 0.06 1.38 6.70 -2.39 -0.02 1.36 16 39 H 0.39 13.27 8.59 -92.71 -0.80 12.47 16 40 H 0.14 4.12 6.68 -2.91 -0.02 4.10 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.28 15.60 8.73 -92.71 -0.81 14.79 16 Total: -1.00 -65.58 335.27 1.74 -63.84 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.42 Total: 21.78 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.75 Total: -27.01 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -2.62 Total: -107.47 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.75 Total: -11.66 kcal Atomic # 14 Polarization: 58.73 SS G_CDS: 1.78 Total: 60.51 kcal Total: -65.58 1.74 -63.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321771345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.255 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds