Wall clock time and date at job start Tue Mar 31 2020 00:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.52998 * 109.46892 * 119.99866 * 2 1 3 5 5 C 1.53001 * 109.47105 * 240.00064 * 2 1 3 6 6 C 1.52998 * 109.47156 * 65.94919 * 5 2 1 7 7 H 1.08997 * 109.47056 * 53.65755 * 6 5 2 8 8 O 1.42899 * 109.47314 * 293.65495 * 6 5 2 9 9 C 1.53003 * 109.46795 * 173.65857 * 6 5 2 10 10 N 1.46502 * 109.46730 * 185.00502 * 9 6 5 11 11 C 1.38823 * 119.99731 * 179.97438 * 10 9 6 12 12 C 1.39795 * 119.58682 * 359.97438 * 11 10 9 13 13 C 1.38601 * 119.49303 * 179.97438 * 12 11 10 14 14 C 1.38385 * 118.67682 * 0.02562 * 13 12 11 15 15 C 1.40554 * 119.15392 * 359.97438 * 14 13 12 16 16 C 1.41316 * 119.78678 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99436 * 359.97438 * 16 15 14 18 18 C 1.40024 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.30743 * 119.99796 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46969 * 90.00282 * 20 18 16 22 22 H 1.48500 * 109.47153 * 209.99738 * 20 18 16 23 23 H 1.48497 * 109.47464 * 330.00136 * 20 18 16 24 24 N 1.31963 * 119.58433 * 179.72443 * 11 10 9 25 25 H 1.08996 * 109.47121 * 51.22143 * 1 2 3 26 26 H 1.08999 * 109.47265 * 171.21990 * 1 2 3 27 27 H 1.08999 * 109.46869 * 291.21833 * 1 2 3 28 28 H 1.08995 * 109.47070 * 59.99654 * 3 2 1 29 29 H 1.08996 * 109.47494 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46998 * 299.99980 * 3 2 1 31 31 H 1.09000 * 109.47387 * 60.00432 * 4 2 1 32 32 H 1.09007 * 109.46805 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47090 * 300.00156 * 4 2 1 34 34 H 1.09000 * 109.46879 * 185.95292 * 5 2 1 35 35 H 1.09008 * 109.46997 * 305.95284 * 5 2 1 36 36 H 0.96705 * 114.00084 * 299.99822 * 8 6 5 37 37 H 1.09005 * 109.46720 * 304.99455 * 9 6 5 38 38 H 1.08997 * 109.47629 * 64.99771 * 9 6 5 39 39 H 0.96998 * 120.00636 * 359.97438 * 10 9 6 40 40 H 1.07998 * 120.25482 * 359.96382 * 12 11 10 41 41 H 1.07992 * 120.65975 * 180.02562 * 13 12 11 42 42 H 1.08009 * 120.42180 * 179.97438 * 14 13 12 43 43 H 0.96999 * 119.99547 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2493 6 6 1.6558 0.0811 -2.4940 7 1 2.0078 1.1072 -2.3878 8 8 0.2346 0.0781 -2.6428 9 6 2.2991 -0.5536 -3.7286 10 7 2.0306 0.2806 -4.9025 11 6 2.5179 -0.0949 -6.1470 12 6 3.2642 -1.2706 -6.2699 13 6 3.7494 -1.6439 -7.5134 14 6 3.4779 -0.8345 -8.6026 15 6 2.7217 0.3353 -8.4147 16 6 2.4361 1.1713 -9.5177 17 1 2.7990 0.9106 -10.5010 18 6 1.6836 2.3380 -9.3356 19 7 1.2448 2.6537 -8.1451 20 14 1.3068 3.4434 -10.7935 21 1 0.0311 3.0159 -11.4221 22 1 1.1836 4.8489 -10.3302 23 1 2.4059 3.3442 -11.7871 24 7 2.2665 0.6598 -7.1999 25 1 -0.3633 0.6436 -0.8011 26 1 -0.3634 -1.0156 -0.1569 27 1 -0.3633 0.3719 0.9580 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2493 32 1 3.1301 -0.7216 1.2490 33 1 1.6766 -0.2074 2.1392 34 1 3.1248 -0.8144 -1.1975 35 1 1.5923 -1.7136 -1.3041 36 1 -0.1486 -0.8042 -2.7425 37 1 3.3758 -0.6322 -3.5774 38 1 1.8808 -1.5478 -3.8858 39 1 1.5123 1.0953 -4.8104 40 1 3.4615 -1.8831 -5.4026 41 1 4.3277 -2.5485 -7.6300 42 1 3.8424 -1.0984 -9.5844 43 1 0.7232 3.4618 -8.0191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325709810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:32 Heat of formation + Delta-G solvation = -33.221943 kcal Electronic energy + Delta-G solvation = -21676.054616 eV Core-core repulsion = 18527.402846 eV Total energy + Delta-G solvation = -3148.651770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.23530 -38.08519 -36.04048 -34.47589 -33.14089 -30.73327 -30.09465 -28.52062 -27.45620 -27.23482 -25.46278 -25.08563 -22.03427 -21.17238 -20.36221 -18.94814 -17.32862 -16.57356 -16.06565 -15.90452 -14.97993 -14.74176 -14.57442 -14.28281 -14.20356 -13.96380 -13.36178 -13.11547 -12.92278 -12.66623 -12.41759 -12.19417 -11.90501 -11.80356 -11.65390 -11.61174 -11.30480 -11.15173 -10.96628 -10.93066 -10.73209 -10.62834 -10.45741 -10.32870 -9.89149 -9.56008 -9.45324 -8.85228 -7.87318 -7.46304 -6.46254 -6.28299 -4.43808 2.91172 3.13891 3.17122 3.27267 3.33579 4.01463 4.05084 4.50198 4.61342 4.74286 4.76575 4.88321 5.11405 5.17563 5.29373 5.48710 5.49469 5.53131 5.68751 5.69229 5.75565 5.81409 5.91577 5.94166 6.03749 6.07963 6.16126 6.17944 6.18551 6.35298 6.46287 6.59595 6.89794 6.92607 6.97934 7.29384 7.63053 7.71025 7.85080 7.95367 8.21545 8.41217 8.75001 8.84645 9.16744 10.29286 10.44917 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003724 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.785316 B = 7516.261051 C = 8372.125790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.138 4.138 6 C 0.094 3.906 7 H 0.107 0.893 8 O -0.550 6.550 9 C 0.112 3.888 10 N -0.733 5.733 11 C 0.411 3.589 12 C -0.370 4.370 13 C -0.032 4.032 14 C -0.318 4.318 15 C 0.292 3.708 16 C -0.435 4.435 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.714 5.714 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 N -0.531 5.531 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.371 0.629 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 -3.714 15.213 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.177 4.177 6 C 0.035 3.965 7 H 0.125 0.875 8 O -0.356 6.356 9 C -0.015 4.015 10 N -0.370 5.370 11 C 0.171 3.829 12 C -0.396 4.396 13 C -0.057 4.057 14 C -0.341 4.341 15 C 0.165 3.835 16 C -0.467 4.467 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.336 5.336 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.253 5.253 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.219 0.781 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.234 0.766 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.180 -2.315 15.567 15.782 hybrid contribution 0.235 -0.761 -0.670 1.041 sum -0.945 -3.076 14.897 15.241 Atomic orbital electron populations 1.22082 0.94058 1.02205 1.02081 1.20448 0.96327 0.95367 0.94220 1.21986 1.00709 0.95651 1.02108 1.21901 1.00770 1.00095 0.97151 1.22299 1.01743 0.99153 0.94456 1.22267 0.81331 1.00939 0.91933 0.87544 1.86600 1.19680 1.33961 1.95313 1.21752 0.99543 0.94444 0.85752 1.44019 1.61260 1.27964 1.03772 1.18546 0.88705 0.89121 0.86503 1.20589 1.18297 1.03241 0.97446 1.20583 0.95719 0.96515 0.92837 1.21530 1.13553 1.01432 0.97578 1.18205 0.86655 0.88953 0.89663 1.19578 1.28282 1.04244 0.94590 0.89934 1.26052 0.94779 0.98172 0.96425 1.70156 1.21458 1.20130 1.21845 0.86382 0.79661 0.79138 0.81900 1.19522 1.20257 1.18637 1.68226 1.28359 1.31313 0.97381 0.89699 0.93391 0.93892 0.92915 0.92856 0.91766 0.92880 0.92867 0.92842 0.90898 0.91419 0.78135 0.92600 0.93134 0.76589 0.89411 0.89037 0.88760 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.57 37.16 0.28 -1.11 16 2 C -0.06 -0.58 0.80 -154.51 -0.12 -0.71 16 3 C -0.15 -1.41 7.96 37.16 0.30 -1.11 16 4 C -0.14 -1.15 8.46 37.16 0.31 -0.84 16 5 C -0.14 -1.33 4.07 -26.73 -0.11 -1.44 16 6 C 0.09 1.13 2.65 -26.73 -0.07 1.06 16 7 H 0.11 1.37 5.97 -51.93 -0.31 1.06 16 8 O -0.55 -6.85 10.11 -35.23 -0.36 -7.20 16 9 C 0.11 1.69 4.52 -4.04 -0.02 1.67 16 10 N -0.73 -14.93 5.67 -60.39 -0.34 -15.28 16 11 C 0.41 10.27 7.65 -155.32 -1.19 9.08 16 12 C -0.37 -8.70 9.34 -38.87 -0.36 -9.06 16 13 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 14 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 15 C 0.29 8.32 6.55 -85.00 -0.56 7.76 16 16 C -0.43 -12.01 9.14 -37.74 -0.34 -12.36 16 17 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 18 C 0.07 1.85 5.50 -17.35 -0.10 1.75 16 19 N -0.71 -19.40 11.46 55.55 0.64 -18.76 16 20 Si 0.90 19.05 29.56 -169.99 -5.02 14.03 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 N -0.53 -15.03 7.89 -10.33 -0.08 -15.11 16 25 H 0.08 0.93 5.93 -51.93 -0.31 0.62 16 26 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 6.20 -51.93 -0.32 0.36 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.60 8.11 -51.92 -0.42 0.18 16 36 H 0.37 3.71 9.05 45.56 0.41 4.12 16 37 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 38 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.40 8.40 8.59 -40.82 -0.35 8.05 16 40 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 2.27 8.06 -52.48 -0.42 1.84 16 43 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -30.46 343.87 -8.99 -39.45 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.24 Total: 12.74 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -2.76 Total: -15.05 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.21 Total: -49.15 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.36 Total: -7.20 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.46 -8.99 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.225 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds