Wall clock time and date at job start Tue Mar 31 2020 00:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.52998 * 109.46892 * 119.99866 * 2 1 3 5 5 C 1.53001 * 109.47105 * 240.00064 * 2 1 3 6 6 C 1.52998 * 109.47156 * 65.94919 * 5 2 1 7 7 H 1.08997 * 109.47056 * 53.65755 * 6 5 2 8 8 O 1.42899 * 109.47314 * 293.65495 * 6 5 2 9 9 C 1.53003 * 109.46795 * 173.65857 * 6 5 2 10 10 N 1.46502 * 109.46730 * 185.00502 * 9 6 5 11 11 C 1.38823 * 119.99731 * 179.97438 * 10 9 6 12 12 C 1.39795 * 119.58682 * 359.97438 * 11 10 9 13 13 C 1.38601 * 119.49303 * 179.97438 * 12 11 10 14 14 C 1.38385 * 118.67682 * 0.02562 * 13 12 11 15 15 C 1.40554 * 119.15392 * 359.97438 * 14 13 12 16 16 C 1.41316 * 119.78678 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99436 * 359.97438 * 16 15 14 18 18 C 1.40024 * 120.00190 * 180.02562 * 16 15 14 19 19 N 1.30743 * 119.99796 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46969 * 90.00282 * 20 18 16 22 22 H 1.48500 * 109.47153 * 209.99738 * 20 18 16 23 23 H 1.48497 * 109.47464 * 330.00136 * 20 18 16 24 24 N 1.31963 * 119.58433 * 179.72443 * 11 10 9 25 25 H 1.08996 * 109.47121 * 51.22143 * 1 2 3 26 26 H 1.08999 * 109.47265 * 171.21990 * 1 2 3 27 27 H 1.08999 * 109.46869 * 291.21833 * 1 2 3 28 28 H 1.08995 * 109.47070 * 59.99654 * 3 2 1 29 29 H 1.08996 * 109.47494 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46998 * 299.99980 * 3 2 1 31 31 H 1.09000 * 109.47387 * 60.00432 * 4 2 1 32 32 H 1.09007 * 109.46805 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47090 * 300.00156 * 4 2 1 34 34 H 1.09000 * 109.46879 * 185.95292 * 5 2 1 35 35 H 1.09008 * 109.46997 * 305.95284 * 5 2 1 36 36 H 0.96705 * 114.00084 * 299.99822 * 8 6 5 37 37 H 1.09005 * 109.46720 * 304.99455 * 9 6 5 38 38 H 1.08997 * 109.47629 * 64.99771 * 9 6 5 39 39 H 0.96998 * 120.00636 * 359.97438 * 10 9 6 40 40 H 1.07998 * 120.25482 * 359.96382 * 12 11 10 41 41 H 1.07992 * 120.65975 * 180.02562 * 13 12 11 42 42 H 1.08009 * 120.42180 * 179.97438 * 14 13 12 43 43 H 0.96999 * 119.99547 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2493 6 6 1.6558 0.0811 -2.4940 7 1 2.0078 1.1072 -2.3878 8 8 0.2346 0.0781 -2.6428 9 6 2.2991 -0.5536 -3.7286 10 7 2.0306 0.2806 -4.9025 11 6 2.5179 -0.0949 -6.1470 12 6 3.2642 -1.2706 -6.2699 13 6 3.7494 -1.6439 -7.5134 14 6 3.4779 -0.8345 -8.6026 15 6 2.7217 0.3353 -8.4147 16 6 2.4361 1.1713 -9.5177 17 1 2.7990 0.9106 -10.5010 18 6 1.6836 2.3380 -9.3356 19 7 1.2448 2.6537 -8.1451 20 14 1.3068 3.4434 -10.7935 21 1 0.0311 3.0159 -11.4221 22 1 1.1836 4.8489 -10.3302 23 1 2.4059 3.3442 -11.7871 24 7 2.2665 0.6598 -7.1999 25 1 -0.3633 0.6436 -0.8011 26 1 -0.3634 -1.0156 -0.1569 27 1 -0.3633 0.3719 0.9580 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2493 32 1 3.1301 -0.7216 1.2490 33 1 1.6766 -0.2074 2.1392 34 1 3.1248 -0.8144 -1.1975 35 1 1.5923 -1.7136 -1.3041 36 1 -0.1486 -0.8042 -2.7425 37 1 3.3758 -0.6322 -3.5774 38 1 1.8808 -1.5478 -3.8858 39 1 1.5123 1.0953 -4.8104 40 1 3.4615 -1.8831 -5.4026 41 1 4.3277 -2.5485 -7.6300 42 1 3.8424 -1.0984 -9.5844 43 1 0.7232 3.4618 -8.0191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325709810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:31 Heat of formation + Delta-G solvation = -52.260313 kcal Electronic energy + Delta-G solvation = -21676.880182 eV Core-core repulsion = 18527.402846 eV Total energy + Delta-G solvation = -3149.477335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37970 -39.73542 -37.11177 -36.00250 -34.95256 -32.40577 -31.69132 -30.07786 -28.17616 -27.95383 -27.31471 -26.39828 -23.56908 -22.69151 -22.10828 -19.79407 -19.20406 -18.13930 -17.20325 -17.06255 -16.48146 -16.43500 -15.85052 -15.61404 -15.19751 -15.16059 -14.73957 -14.61089 -14.52117 -13.90385 -13.68185 -13.39764 -13.12196 -12.90226 -12.79903 -12.73299 -12.60917 -12.50728 -12.37469 -12.25140 -12.08747 -11.78276 -11.68080 -11.45723 -11.30940 -11.25359 -10.66974 -10.49726 -9.83202 -9.43249 -8.27466 -8.21846 -6.47841 1.06797 1.35183 1.41429 1.54908 1.59147 2.25401 2.63083 2.93243 3.53304 3.68624 3.91409 3.99905 4.05339 4.17340 4.23358 4.37510 4.44759 4.64671 4.65973 4.73160 4.79948 4.83804 4.89489 4.98203 4.99718 5.00981 5.01488 5.12414 5.15107 5.18065 5.19552 5.34815 5.37207 5.45850 5.55618 5.69494 5.72202 5.96812 6.08079 6.23262 6.57259 6.82741 6.85777 6.97419 7.23091 8.35877 8.52247 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003724 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.785316 B = 7516.261051 C = 8372.125790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.130 4.130 6 C 0.107 3.893 7 H 0.096 0.904 8 O -0.562 6.562 9 C 0.109 3.891 10 N -0.729 5.729 11 C 0.393 3.607 12 C -0.368 4.368 13 C -0.030 4.030 14 C -0.346 4.346 15 C 0.258 3.742 16 C -0.472 4.472 17 H 0.086 0.914 18 C 0.025 3.975 19 N -0.752 5.752 20 Si 0.987 3.013 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.256 1.256 24 N -0.567 5.567 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.382 0.618 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.392 0.608 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -4.532 16.229 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.205 4.205 4 C -0.196 4.196 5 C -0.168 4.168 6 C 0.048 3.952 7 H 0.113 0.887 8 O -0.369 6.369 9 C -0.016 4.016 10 N -0.364 5.364 11 C 0.152 3.848 12 C -0.394 4.394 13 C -0.054 4.054 14 C -0.369 4.369 15 C 0.131 3.869 16 C -0.504 4.504 17 H 0.104 0.896 18 C -0.197 4.197 19 N -0.374 5.374 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.180 1.180 24 N -0.290 5.290 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.226 0.774 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.975 -3.169 16.632 16.959 hybrid contribution 0.185 -0.591 -0.851 1.053 sum -0.790 -3.761 15.781 16.242 Atomic orbital electron populations 1.22031 0.94281 1.02223 1.01573 1.20442 0.96096 0.95089 0.94615 1.21988 1.00935 0.96020 1.01574 1.21865 1.01016 1.00268 0.96464 1.22237 1.02271 0.99246 0.93071 1.22128 0.80962 1.00552 0.91565 0.88652 1.86598 1.19856 1.35107 1.95346 1.22054 1.00269 0.94290 0.84984 1.44236 1.60224 1.28159 1.03772 1.19033 0.88968 0.89562 0.87279 1.20945 1.17061 1.02812 0.98568 1.21011 0.95051 0.97203 0.92129 1.21696 1.14566 1.01697 0.98925 1.18692 0.87616 0.90260 0.90320 1.19943 1.29928 1.05690 0.94855 0.89552 1.26979 0.93928 0.99179 0.99591 1.70262 1.22102 1.20899 1.24145 0.85153 0.79537 0.76873 0.77737 1.18824 1.19330 1.17967 1.68197 1.29715 1.32902 0.98211 0.91455 0.92668 0.93556 0.92419 0.92490 0.93355 0.92251 0.92470 0.92473 0.90204 0.90130 0.76888 0.92050 0.92271 0.77382 0.86339 0.85246 0.87983 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.57 71.98 0.54 -1.94 16 2 C -0.06 -1.02 0.80 -52.18 -0.04 -1.06 16 3 C -0.15 -2.66 7.96 71.98 0.57 -2.09 16 4 C -0.14 -1.90 8.46 71.98 0.61 -1.29 16 5 C -0.13 -2.20 4.07 30.59 0.12 -2.07 16 6 C 0.11 2.44 2.65 30.59 0.08 2.52 16 7 H 0.10 2.43 5.97 -2.39 -0.01 2.41 16 8 O -0.56 -13.52 10.11 -148.98 -1.51 -15.02 16 9 C 0.11 3.14 4.52 86.38 0.39 3.53 16 10 N -0.73 -29.66 5.67 -344.97 -1.96 -31.62 16 11 C 0.39 19.68 7.65 133.42 1.02 20.70 16 12 C -0.37 -16.80 9.34 22.73 0.21 -16.59 16 13 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 14 C -0.35 -18.09 9.83 22.87 0.22 -17.87 16 15 C 0.26 15.14 6.55 40.18 0.26 15.41 16 16 C -0.47 -26.89 9.14 23.46 0.21 -26.67 16 17 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 18 C 0.02 1.32 5.50 85.29 0.47 1.79 16 19 N -0.75 -41.98 11.46 21.84 0.25 -41.73 16 20 Si 0.99 39.60 29.56 68.60 2.03 41.63 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 N -0.57 -32.98 7.89 -186.59 -1.47 -34.45 16 25 H 0.07 1.42 5.93 -2.39 -0.01 1.41 16 26 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 27 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.02 6.20 -2.39 -0.01 1.00 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.18 8.11 -2.38 -0.02 1.16 16 36 H 0.38 7.12 9.05 -74.05 -0.67 6.45 16 37 H 0.06 1.73 7.92 -2.38 -0.02 1.71 16 38 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 39 H 0.39 16.87 8.59 -92.71 -0.80 16.07 16 40 H 0.12 4.58 6.68 -2.91 -0.02 4.56 16 41 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 43 H 0.28 13.94 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -67.20 343.87 1.80 -65.40 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.46 Total: 42.57 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.91 Total: -26.78 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.18 Total: -107.80 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -1.51 Total: -15.02 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -67.20 1.80 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325709810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.140 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds