Wall clock time and date at job start Tue Mar 31 2020 00:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 C 1.53004 * 109.46857 * 60.00071 * 3 2 1 5 5 C 1.52996 * 109.47176 * 60.00034 * 4 3 2 6 6 C 1.52996 * 109.47200 * 300.00120 * 3 2 1 7 7 O 1.42899 * 109.47193 * 299.99904 * 6 3 2 8 8 C 1.52995 * 109.47249 * 180.02562 * 3 2 1 9 9 N 1.46500 * 109.46939 * 179.97438 * 8 3 2 10 10 C 1.38831 * 119.99939 * 179.97438 * 9 8 3 11 11 C 1.39791 * 119.58239 * 0.02562 * 10 9 8 12 12 C 1.38601 * 119.49243 * 179.97438 * 11 10 9 13 13 C 1.38393 * 118.67684 * 359.71946 * 12 11 10 14 14 C 1.40549 * 119.14908 * 0.54349 * 13 12 11 15 15 C 1.41313 * 119.78638 * 179.72648 * 14 13 12 16 16 H 1.08002 * 119.99943 * 8.69659 * 15 14 13 17 17 C 1.40032 * 120.00037 * 188.70276 * 15 14 13 18 18 N 1.30744 * 119.99496 * 195.86683 * 17 15 14 19 19 Si 1.86790 * 120.00178 * 15.59100 * 17 15 14 20 20 H 1.48499 * 109.47208 * 270.27897 * 19 17 15 21 21 H 1.48505 * 109.47186 * 30.27535 * 19 17 15 22 22 H 1.48501 * 109.47164 * 150.27682 * 19 17 15 23 23 N 1.31960 * 119.58588 * 180.02562 * 10 9 8 24 24 H 1.09008 * 109.47058 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47144 * 299.99624 * 1 2 3 26 26 H 1.09004 * 109.46887 * 60.00070 * 1 2 3 27 27 H 1.09003 * 109.47176 * 239.99905 * 2 1 3 28 28 H 1.08997 * 109.47485 * 120.00151 * 2 1 3 29 29 H 1.08999 * 109.46597 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46639 * 299.99931 * 4 3 2 31 31 H 1.08994 * 109.47096 * 300.00235 * 5 4 3 32 32 H 1.08999 * 109.46980 * 60.00082 * 5 4 3 33 33 H 1.09003 * 109.46881 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47421 * 59.99380 * 6 3 2 35 35 H 1.08993 * 109.47578 * 179.97438 * 6 3 2 36 36 H 0.96703 * 114.00677 * 179.97438 * 7 6 3 37 37 H 1.09003 * 109.47176 * 59.99905 * 8 3 2 38 38 H 1.09005 * 109.47406 * 299.99857 * 8 3 2 39 39 H 0.96993 * 120.00420 * 0.02562 * 9 8 3 40 40 H 1.07999 * 120.25737 * 359.95264 * 11 10 9 41 41 H 1.07996 * 120.66478 * 180.02562 * 12 11 10 42 42 H 1.07999 * 120.42310 * 180.28596 * 13 12 11 43 43 H 0.96997 * 120.00734 * 354.52178 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 2.0400 1.4424 2.4985 6 6 1.5300 2.1638 -1.2492 7 8 2.0063 1.4902 -2.4160 8 6 3.5699 1.4425 -0.0006 9 7 4.0582 2.8237 -0.0013 10 6 5.4232 3.0774 -0.0014 11 6 6.3238 2.0083 -0.0014 12 6 7.6861 2.2638 -0.0021 13 6 8.1151 3.5795 -0.0086 14 6 7.1603 4.6109 -0.0027 15 6 7.5833 5.9592 -0.0034 16 1 8.6265 6.1978 -0.1498 17 6 6.6502 6.9860 0.1859 18 7 6.9640 8.2185 -0.1171 19 14 4.9545 6.5936 0.8641 20 1 4.0305 6.2903 -0.2582 21 1 5.0419 5.4164 1.7652 22 1 4.4429 7.7621 1.6245 23 7 5.8540 4.3247 -0.0014 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8930 3.1915 1.2490 30 1 0.4400 2.1637 1.2492 31 1 1.6767 0.4148 2.4984 32 1 3.1300 1.4425 2.4985 33 1 1.6770 1.9566 3.3885 34 1 0.4400 2.1637 -1.2493 35 1 1.8929 3.1915 -1.2490 36 1 1.7207 1.8934 -3.2472 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 3.4280 3.5610 -0.0008 40 1 5.9610 0.9911 -0.0006 41 1 8.3986 1.4523 -0.0026 42 1 9.1700 3.8108 -0.0139 43 1 7.8671 8.4342 -0.3974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:49 Heat of formation + Delta-G solvation = -45.574892 kcal Electronic energy + Delta-G solvation = -22581.694001 eV Core-core repulsion = 19432.506567 eV Total energy + Delta-G solvation = -3149.187434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.62752 -38.35033 -35.80902 -34.57151 -33.29716 -31.22726 -30.98263 -29.74011 -28.07214 -26.09103 -25.16754 -23.26559 -23.11493 -21.70614 -20.22691 -18.47582 -18.04001 -17.34716 -16.89900 -15.51048 -15.34366 -15.09530 -14.96960 -14.46732 -14.08867 -13.72598 -13.39702 -13.18136 -12.95311 -12.90735 -12.63134 -12.18405 -12.09019 -12.01447 -11.87200 -11.72020 -11.52030 -11.21933 -10.78268 -10.65961 -10.58658 -10.36923 -10.20002 -10.05725 -9.90264 -9.67835 -9.32498 -8.86005 -8.34345 -7.69661 -7.18174 -6.73211 -4.66943 2.78551 2.93192 3.54911 3.68037 3.88352 4.01093 4.23254 4.44189 4.65693 4.69519 4.73266 4.87803 5.09168 5.20131 5.33597 5.35246 5.44459 5.50109 5.61190 5.70325 5.73282 5.78021 5.83992 5.96124 5.96568 6.05585 6.05760 6.12218 6.25991 6.29002 6.38319 6.49246 6.61253 6.71913 6.74561 7.36812 7.52733 7.57797 7.61601 7.71911 7.99435 8.12287 8.40692 8.57095 8.84102 9.72932 10.07033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.005516 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.087061 B = 5075.144876 C = 5573.294656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.154 4.154 6 C 0.083 3.917 7 O -0.565 6.565 8 C 0.152 3.848 9 N -0.736 5.736 10 C 0.440 3.560 11 C -0.362 4.362 12 C -0.019 4.019 13 C -0.309 4.309 14 C 0.289 3.711 15 C -0.484 4.484 16 H 0.081 0.919 17 C 0.051 3.949 18 N -0.809 5.809 19 Si 1.147 2.853 20 H -0.290 1.290 21 H -0.279 1.279 22 H -0.332 1.332 23 N -0.618 5.618 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.376 0.624 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.390 0.610 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 -12.801 0.604 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.067 4.067 4 C -0.155 4.155 5 C -0.211 4.211 6 C 0.006 3.994 7 O -0.369 6.369 8 C 0.027 3.973 9 N -0.373 5.373 10 C 0.202 3.798 11 C -0.388 4.388 12 C -0.043 4.043 13 C -0.332 4.332 14 C 0.165 3.835 15 C -0.516 4.516 16 H 0.099 0.901 17 C -0.171 4.171 18 N -0.431 5.431 19 Si 0.981 3.019 20 H -0.218 1.218 21 H -0.206 1.206 22 H -0.265 1.265 23 N -0.347 5.347 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.225 0.775 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.837 -11.992 1.359 19.125 hybrid contribution 1.886 -0.611 -0.977 2.211 sum -12.950 -12.603 0.381 18.075 Atomic orbital electron populations 1.21853 0.95991 1.01375 1.01762 1.21445 0.95716 0.94903 1.02529 1.20851 0.95524 0.96545 0.93741 1.21561 1.00470 0.99747 0.93675 1.21833 1.02207 1.00166 0.96852 1.22218 0.96762 0.95068 0.85390 1.86465 1.77712 1.56930 1.15828 1.21137 0.91258 0.83843 1.01099 1.44271 1.03437 1.06274 1.83294 1.18067 0.83773 0.89588 0.88360 1.20479 0.93168 0.96572 1.28593 1.20696 0.94383 0.95621 0.93589 1.21391 0.98648 0.92852 1.20297 1.18177 0.85578 0.93677 0.86090 1.20666 0.97219 0.90476 1.43213 0.90110 1.27664 1.07420 0.91624 0.90381 1.70618 1.22471 1.21270 1.28712 0.82053 0.71396 0.71643 0.76782 1.21766 1.20620 1.26522 1.66214 1.17378 1.18399 1.32678 0.92979 0.92534 0.92673 0.91014 0.91586 0.91550 0.91547 0.92510 0.91824 0.92793 0.93558 0.93521 0.77755 0.91873 0.92541 0.77472 0.88364 0.88377 0.88312 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.21 37.16 0.34 -0.96 16 2 C -0.11 -1.10 4.49 -26.73 -0.12 -1.22 16 3 C -0.07 -0.77 0.16 -154.51 -0.03 -0.80 16 4 C -0.12 -1.30 4.46 -26.73 -0.12 -1.42 16 5 C -0.15 -1.67 9.21 37.16 0.34 -1.33 16 6 C 0.08 0.96 5.39 37.16 0.20 1.16 16 7 O -0.56 -6.78 12.31 -35.23 -0.43 -7.22 16 8 C 0.15 2.28 3.27 -4.04 -0.01 2.27 16 9 N -0.74 -13.84 5.12 -60.39 -0.31 -14.15 16 10 C 0.44 10.18 7.65 -155.31 -1.19 9.00 16 11 C -0.36 -7.99 9.34 -38.87 -0.36 -8.35 16 12 C -0.02 -0.42 10.15 -39.39 -0.40 -0.82 16 13 C -0.31 -7.70 9.83 -38.65 -0.38 -8.08 16 14 C 0.29 7.89 6.27 -85.00 -0.53 7.36 16 15 C -0.48 -13.67 9.51 -37.74 -0.36 -14.03 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 17 C 0.05 1.41 5.51 -17.34 -0.10 1.32 16 18 N -0.81 -22.59 13.65 55.55 0.76 -21.83 16 19 Si 1.15 28.68 25.92 -169.99 -4.41 24.28 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -7.06 6.54 56.52 0.37 -6.69 16 22 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 23 N -0.62 -16.20 5.05 -10.33 -0.05 -16.25 16 24 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 26 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 27 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 28 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 29 H 0.07 0.84 6.86 -51.93 -0.36 0.48 16 30 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 35 H 0.05 0.60 6.86 -51.93 -0.36 0.24 16 36 H 0.38 3.08 9.12 45.56 0.42 3.50 16 37 H 0.06 1.03 7.46 -51.93 -0.39 0.65 16 38 H 0.06 0.84 6.21 -51.93 -0.32 0.52 16 39 H 0.39 7.23 6.28 -40.82 -0.26 6.97 16 40 H 0.10 1.93 6.68 -52.49 -0.35 1.58 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 43 H 0.28 7.57 8.73 -40.82 -0.36 7.22 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -30.89 328.61 -7.85 -38.75 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.65 Total: 7.38 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.71 Total: -15.91 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.40 Total: -52.24 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.43 Total: -7.22 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -4.41 Total: 24.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.89 -7.85 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.829 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds