Wall clock time and date at job start Tue Mar 31 2020 00:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 C 1.53004 * 109.46857 * 60.00071 * 3 2 1 5 5 C 1.52996 * 109.47176 * 60.00034 * 4 3 2 6 6 C 1.52996 * 109.47200 * 300.00120 * 3 2 1 7 7 O 1.42899 * 109.47193 * 299.99904 * 6 3 2 8 8 C 1.52995 * 109.47249 * 180.02562 * 3 2 1 9 9 N 1.46500 * 109.46939 * 179.97438 * 8 3 2 10 10 C 1.38831 * 119.99939 * 179.97438 * 9 8 3 11 11 C 1.39791 * 119.58239 * 0.02562 * 10 9 8 12 12 C 1.38601 * 119.49243 * 179.97438 * 11 10 9 13 13 C 1.38393 * 118.67684 * 359.71946 * 12 11 10 14 14 C 1.40549 * 119.14908 * 0.54349 * 13 12 11 15 15 C 1.41313 * 119.78638 * 179.72648 * 14 13 12 16 16 H 1.08002 * 119.99943 * 8.69659 * 15 14 13 17 17 C 1.40032 * 120.00037 * 188.70276 * 15 14 13 18 18 N 1.30744 * 119.99496 * 195.86683 * 17 15 14 19 19 Si 1.86790 * 120.00178 * 15.59100 * 17 15 14 20 20 H 1.48499 * 109.47208 * 270.27897 * 19 17 15 21 21 H 1.48505 * 109.47186 * 30.27535 * 19 17 15 22 22 H 1.48501 * 109.47164 * 150.27682 * 19 17 15 23 23 N 1.31960 * 119.58588 * 180.02562 * 10 9 8 24 24 H 1.09008 * 109.47058 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47144 * 299.99624 * 1 2 3 26 26 H 1.09004 * 109.46887 * 60.00070 * 1 2 3 27 27 H 1.09003 * 109.47176 * 239.99905 * 2 1 3 28 28 H 1.08997 * 109.47485 * 120.00151 * 2 1 3 29 29 H 1.08999 * 109.46597 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46639 * 299.99931 * 4 3 2 31 31 H 1.08994 * 109.47096 * 300.00235 * 5 4 3 32 32 H 1.08999 * 109.46980 * 60.00082 * 5 4 3 33 33 H 1.09003 * 109.46881 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47421 * 59.99380 * 6 3 2 35 35 H 1.08993 * 109.47578 * 179.97438 * 6 3 2 36 36 H 0.96703 * 114.00677 * 179.97438 * 7 6 3 37 37 H 1.09003 * 109.47176 * 59.99905 * 8 3 2 38 38 H 1.09005 * 109.47406 * 299.99857 * 8 3 2 39 39 H 0.96993 * 120.00420 * 0.02562 * 9 8 3 40 40 H 1.07999 * 120.25737 * 359.95264 * 11 10 9 41 41 H 1.07996 * 120.66478 * 180.02562 * 12 11 10 42 42 H 1.07999 * 120.42310 * 180.28596 * 13 12 11 43 43 H 0.96997 * 120.00734 * 354.52178 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 2.0400 1.4424 2.4985 6 6 1.5300 2.1638 -1.2492 7 8 2.0063 1.4902 -2.4160 8 6 3.5699 1.4425 -0.0006 9 7 4.0582 2.8237 -0.0013 10 6 5.4232 3.0774 -0.0014 11 6 6.3238 2.0083 -0.0014 12 6 7.6861 2.2638 -0.0021 13 6 8.1151 3.5795 -0.0086 14 6 7.1603 4.6109 -0.0027 15 6 7.5833 5.9592 -0.0034 16 1 8.6265 6.1978 -0.1498 17 6 6.6502 6.9860 0.1859 18 7 6.9640 8.2185 -0.1171 19 14 4.9545 6.5936 0.8641 20 1 4.0305 6.2903 -0.2582 21 1 5.0419 5.4164 1.7652 22 1 4.4429 7.7621 1.6245 23 7 5.8540 4.3247 -0.0014 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8930 3.1915 1.2490 30 1 0.4400 2.1637 1.2492 31 1 1.6767 0.4148 2.4984 32 1 3.1300 1.4425 2.4985 33 1 1.6770 1.9566 3.3885 34 1 0.4400 2.1637 -1.2493 35 1 1.8929 3.1915 -1.2490 36 1 1.7207 1.8934 -3.2472 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 3.4280 3.5610 -0.0008 40 1 5.9610 0.9911 -0.0006 41 1 8.3986 1.4523 -0.0026 42 1 9.1700 3.8108 -0.0139 43 1 7.8671 8.4342 -0.3974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:49 Heat of formation + Delta-G solvation = -65.655850 kcal Electronic energy + Delta-G solvation = -22582.564777 eV Core-core repulsion = 19432.506567 eV Total energy + Delta-G solvation = -3150.058209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88918 -39.94772 -36.85179 -36.15061 -35.12083 -32.89365 -32.07125 -31.25601 -29.30191 -27.30525 -27.03000 -24.26300 -24.05067 -23.54591 -21.99095 -20.34352 -19.24065 -18.37307 -18.22683 -17.14769 -16.42426 -16.38698 -16.13917 -15.98421 -15.73658 -15.49985 -14.84838 -14.52784 -14.22183 -14.20014 -13.86782 -13.64739 -13.62538 -13.37955 -12.91653 -12.75865 -12.70166 -12.41311 -12.34516 -12.07002 -12.01878 -11.71730 -11.60092 -11.22641 -11.21284 -11.09201 -10.79935 -10.69543 -10.26077 -9.70138 -9.24558 -8.48747 -6.75925 0.82759 1.05505 1.51634 1.68854 1.97393 2.42751 2.48227 2.68326 3.30669 3.69514 3.71780 3.81599 3.98838 4.21820 4.27359 4.32184 4.51433 4.53593 4.56480 4.63305 4.69549 4.71654 4.76758 4.79356 4.84202 4.87455 4.93873 4.99722 5.04958 5.17655 5.29076 5.33535 5.38257 5.41221 5.42697 5.51395 5.65236 5.72830 5.87616 6.00059 6.22590 6.60405 6.63239 6.88877 6.95113 7.78748 7.97586 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.005516 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.087061 B = 5075.144876 C = 5573.294656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.061 4.061 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.083 3.917 7 O -0.581 6.581 8 C 0.150 3.850 9 N -0.726 5.726 10 C 0.423 3.577 11 C -0.349 4.349 12 C -0.011 4.011 13 C -0.334 4.334 14 C 0.274 3.726 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.831 5.831 19 Si 1.183 2.817 20 H -0.285 1.285 21 H -0.287 1.287 22 H -0.325 1.325 23 N -0.637 5.637 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.391 0.609 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.391 0.609 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.499 -15.637 0.935 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.061 4.061 4 C -0.154 4.154 5 C -0.209 4.209 6 C 0.005 3.995 7 O -0.388 6.388 8 C 0.027 3.973 9 N -0.361 5.361 10 C 0.185 3.815 11 C -0.374 4.374 12 C -0.035 4.035 13 C -0.357 4.357 14 C 0.148 3.852 15 C -0.553 4.553 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.455 5.455 19 Si 1.014 2.986 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.258 1.258 23 N -0.366 5.366 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.240 0.760 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.227 0.773 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.124 -14.848 1.672 22.726 hybrid contribution 2.552 -0.002 -1.112 2.784 sum -14.571 -14.850 0.559 20.813 Atomic orbital electron populations 1.21831 0.94420 1.02237 1.02164 1.21402 0.96987 0.93311 1.02347 1.20847 0.92983 0.98015 0.94304 1.21575 1.01883 0.98529 0.93378 1.21818 1.00702 1.01370 0.96982 1.22243 0.98131 0.93894 0.85230 1.86422 1.78210 1.57412 1.16796 1.21338 0.93800 0.81481 1.00728 1.44461 1.01825 1.08065 1.81748 1.18516 0.85826 0.89119 0.88049 1.20927 0.93062 0.97745 1.25711 1.21130 0.95377 0.95596 0.91383 1.21531 0.98612 0.93741 1.21791 1.18339 0.86729 0.93863 0.86247 1.20655 0.96637 0.91726 1.46258 0.91899 1.28421 1.09289 0.91490 0.90203 1.70639 1.22499 1.21545 1.30816 0.81576 0.69407 0.71227 0.76346 1.21239 1.21458 1.25791 1.66160 1.17044 1.20205 1.33230 0.91985 0.91689 0.92666 0.92074 0.90911 0.93403 0.89219 0.90712 0.94045 0.92251 0.91120 0.95329 0.76003 0.92832 0.91971 0.77341 0.85323 0.84304 0.87983 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.21 71.98 0.66 -1.31 16 2 C -0.10 -1.75 4.49 30.59 0.14 -1.61 16 3 C -0.06 -1.27 0.16 -52.18 -0.01 -1.28 16 4 C -0.12 -2.26 4.46 30.59 0.14 -2.13 16 5 C -0.15 -2.89 9.21 71.98 0.66 -2.22 16 6 C 0.08 1.71 5.39 71.98 0.39 2.10 16 7 O -0.58 -12.70 12.31 -148.98 -1.83 -14.54 16 8 C 0.15 4.17 3.27 86.38 0.28 4.45 16 9 N -0.73 -26.17 5.12 -344.98 -1.77 -27.93 16 10 C 0.42 19.00 7.65 133.41 1.02 20.02 16 11 C -0.35 -14.41 9.34 22.73 0.21 -14.20 16 12 C -0.01 -0.46 10.15 22.39 0.23 -0.23 16 13 C -0.33 -16.51 9.83 22.87 0.22 -16.29 16 14 C 0.27 15.15 6.27 40.18 0.25 15.40 16 15 C -0.52 -30.56 9.51 23.46 0.22 -30.34 16 16 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 17 C 0.02 1.31 5.51 85.29 0.47 1.78 16 18 N -0.83 -47.99 13.65 21.84 0.30 -47.69 16 19 Si 1.18 59.17 25.92 68.60 1.78 60.95 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.29 -14.51 6.54 99.48 0.65 -13.86 16 22 H -0.33 -15.65 7.11 99.48 0.71 -14.94 16 23 N -0.64 -33.29 5.05 -186.59 -0.94 -34.23 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.06 0.76 6.43 -2.39 -0.02 0.75 16 26 H 0.05 0.74 6.43 -2.38 -0.02 0.72 16 27 H 0.06 1.19 7.68 -2.39 -0.02 1.18 16 28 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 29 H 0.05 1.12 6.86 -2.39 -0.02 1.10 16 30 H 0.09 1.35 6.43 -2.39 -0.02 1.33 16 31 H 0.07 1.14 6.43 -2.39 -0.02 1.12 16 32 H 0.04 0.97 6.43 -2.39 -0.02 0.95 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.13 6.43 -2.39 -0.02 1.11 16 35 H 0.03 0.69 6.86 -2.39 -0.02 0.67 16 36 H 0.39 5.64 9.12 -74.06 -0.68 4.97 16 37 H 0.05 1.62 7.46 -2.39 -0.02 1.60 16 38 H 0.06 1.68 6.21 -2.38 -0.01 1.67 16 39 H 0.39 14.06 6.28 -92.71 -0.58 13.48 16 40 H 0.13 4.52 6.68 -2.91 -0.02 4.50 16 41 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 42 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 43 H 0.28 15.70 8.73 -92.71 -0.81 14.89 16 Total: -1.00 -67.17 328.61 2.10 -65.07 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.32 Total: 24.23 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.89 Total: -25.86 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -2.41 Total: -109.86 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.83 Total: -14.54 kcal Atomic # 14 Polarization: 59.17 SS G_CDS: 1.78 Total: 60.95 kcal Total: -67.17 2.10 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.584 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds